CsaV3_6G012850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G012850
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTranscription factor bhlh36
Locationchr6 : 8973920 .. 8976038 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAATTTGATAAGATGGAATTAAAAAAATGATAATATAATTTGAAGAAATTTCTGCCCTTAAAACGGCTAATATGTACGGCTGGGTGATTGAGAAATTTCCACCATTACGGCCGACCAGGCGACCACGTGATGTGTGTGTCTATTTTCATCAAAGAGCAATAATATTATCCCCCCCAGATCCAATAAATATAAATATCACCTCCCCGGCTGCCTCCTTCATCTTTCCCTTCATTTTCATTTCTTTTTTAAAACGCTTCCCATTTTCATATAATCATCTAAATATTATTATTAATTATTCTTTATTCTTTCTGATGGAAAGAAAGGTCATGGAGAAAAATCGCAGAACCAAAATGAAATCTCTCTACTCCAAATTGAGTTCCCTTCTCCCATCCCATCAATTAAATGTTTGTTCTTTTCTTTTTCTCTCTCTTTCCTTTTCTTTTATATTTTTCCATATATTATTACAATAGGTCCTTCTTATCACTCAAACTTTTGTAGGATCAGTTGCCACGGACAGTTTCAGATCAGATAGAGGCAGCAATAAATTACATCAAATCATTGGAGACTAAGCTCAAACAGGATGAGGAGAAGAAGGAGGGATATTTAAGAAGATCCAAAATGGCTTCGCCCTCCACTGCCTCATCCTCATCGTCTTACTCGGCATTACCGATAACCCATAATAGGAACGTACCTGAATTGAAAATCAAAGAGATGGGCCCTGCTGTGGAGGTTGTTTTAACGACTGGATTGGAGGATCGCTCTTTGTTTTATGACACTATTCGTATCCTTAACGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATAACACAATCTTATATTCACTCCATGCAGAGGTATGTATATTCAACAACAATTTTAATACTATTAACACTATGCTCTATAATACCTACATTTTCTTTCAAATACTTTACACCTCCACTTTATATTATTATAACCCAAATTAAGGATTAGTTTTGATTGACTCCACCAAAAAAAATGTTCTTACCAGAAACTCACTTTTACTTAAATTTTGTTGGTGAAAGTTATTTAAAAGACACTTCAATAAAAAGTATTTTGAATGGCAAACATTCTAATTTTTTTCAAAAATGATTTATTTTTAAAACAACCTTTACAAATTAATTTTCTAAAAACCAAATGGATATCCAAATAGGCCTTATTCTTCTTTAGTAATGATTTTGGCTTGAGCTTCCTACTTTTAAACTTATGTTTATCTTCTACCAGAATTAATTTAACACAGTAATGGAATTCTAATAACAAAATGTAGTTATTCAAAAACTACCTTCTTTTTTAGTTTTTAAAATATTGGCTTTGTTTTAAATAAAATATTAGTGAAAAAGTAAATAATAAAACAAATAAATTTTTAATTGGACTTGTTTCATCGTTTTAATCTTCAAAAACTAAAACCCTAAAAAGTAAATAGTTTTCGAATTGTATTTTAATTTTTGTTATGTTTTCTATTTACGAAAATTGTGGTTTTCCACCATAATTTGTTACTATATATATATATATAATATTGATTATGTTCCCAAAACATTTGAATTATCAATCAAATTAAGAAACAAATTTAACTAAAATGACTTTTTTTTTTTTTTTTGGGTTATGTAATTAATGGAGTAGATTGAAGATGTGGTGTTCGACTTTGGAGGAACGAAGAAACTAATAGAGAGGCTAAACCAATTGGTTTACGAACCCAAGAATTAAGCAAGCAGAAATGCCAGTTTCCAGCCGTCACGCCTGAACCCATCCTCCGCCCAACCTTTCAAGGCCATGATCGAGTTTCCATCACCATTCTTAGACCCACTCAATTTTGAACCCAAATTTTAATTGTTATATTTATGCATGCGACCACCCTTTTATTAAGTACACAATATTATCCATGCTTTGTAGCTTGAGAAAACCTACGTATTAGAAACGCCATGGAAGTATCAAGTATGGGAGAATATTCAATATGGCCATTGTGTCATTCGTTATACTCCAAAATCATGTTTACATTTTCCTTCTACTTTTAGGTTTCCTTTATATTAAGAAATATTTGAGTTACACTCACATTGAATATCTTTTTGTTGAAATACATGATAATAT

mRNA sequence

ATGTACGGCTGGGTGATTGAGAAATTTCCACCATTACGGCCGACCAGGCGACCACGTGATGTGTGTGTCTATTTTCATCAAAGAGCAATAATATTATCCCCCCCAGATCCAATAAATATAAATATCACCTCCCCGGCTGCCTCCTTCATCTTTCCCTTCATTTTCATTTCTTTTTTAAAACGCTTCCCATTTTCATATAATCATCTAAATATTATTATTAATTATTCTTTATTCTTTCTGATGGAAAGAAAGGTCATGGAGAAAAATCGCAGAACCAAAATGAAATCTCTCTACTCCAAATTGAGTTCCCTTCTCCCATCCCATCAATTAAATGATCAGTTGCCACGGACAGTTTCAGATCAGATAGAGGCAGCAATAAATTACATCAAATCATTGGAGACTAAGCTCAAACAGGATGAGGAGAAGAAGGAGGGATATTTAAGAAGATCCAAAATGGCTTCGCCCTCCACTGCCTCATCCTCATCGTCTTACTCGGCATTACCGATAACCCATAATAGGAACGTACCTGAATTGAAAATCAAAGAGATGGGCCCTGCTGTGGAGGTTGTTTTAACGACTGGATTGGAGGATCGCTCTTTGTTTTATGACACTATTCGTATCCTTAACGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATAACACAATCTTATATTCACTCCATGCAGAGATTGAAGATGTGGTGTTCGACTTTGGAGGAACGAAGAAACTAATAGAGAGGCTAAACCAATTGGTTTACGAACCCAAGAATTAA

Coding sequence (CDS)

ATGTACGGCTGGGTGATTGAGAAATTTCCACCATTACGGCCGACCAGGCGACCACGTGATGTGTGTGTCTATTTTCATCAAAGAGCAATAATATTATCCCCCCCAGATCCAATAAATATAAATATCACCTCCCCGGCTGCCTCCTTCATCTTTCCCTTCATTTTCATTTCTTTTTTAAAACGCTTCCCATTTTCATATAATCATCTAAATATTATTATTAATTATTCTTTATTCTTTCTGATGGAAAGAAAGGTCATGGAGAAAAATCGCAGAACCAAAATGAAATCTCTCTACTCCAAATTGAGTTCCCTTCTCCCATCCCATCAATTAAATGATCAGTTGCCACGGACAGTTTCAGATCAGATAGAGGCAGCAATAAATTACATCAAATCATTGGAGACTAAGCTCAAACAGGATGAGGAGAAGAAGGAGGGATATTTAAGAAGATCCAAAATGGCTTCGCCCTCCACTGCCTCATCCTCATCGTCTTACTCGGCATTACCGATAACCCATAATAGGAACGTACCTGAATTGAAAATCAAAGAGATGGGCCCTGCTGTGGAGGTTGTTTTAACGACTGGATTGGAGGATCGCTCTTTGTTTTATGACACTATTCGTATCCTTAACGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATAACACAATCTTATATTCACTCCATGCAGAGATTGAAGATGTGGTGTTCGACTTTGGAGGAACGAAGAAACTAATAGAGAGGCTAAACCAATTGGTTTACGAACCCAAGAATTAA

Protein sequence

MYGWVIEKFPPLRPTRRPRDVCVYFHQRAIILSPPDPININITSPAASFIFPFIFISFLKRFPFSYNHLNIIINYSLFFLMERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN
Homology
[Close]
BLAST of CsaV3_6G012850 vs. NCBI nr
Match: XP_016900532.1 (PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 6.0e-59
Identity = 132/168 (78.57%), Postives = 140/168 (83.33%), Query Frame = 0 

Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  NDQLPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 166

[Close]
BLAST of CsaV3_6G012850 vs. NCBI nr
Match: XP_016900533.1 (PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 3.7e-56
Identity = 130/168 (77.38%), Postives = 138/168 (82.14%), Query Frame = 0 

Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  N  LPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSN--LPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 164

[Close]
BLAST of CsaV3_6G012850 vs. NCBI nr
Match: XP_022944108.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-42
Identity = 107/169 (63.31%), Postives = 129/169 (76.33%), Query Frame = 0 

Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLP+H  N +LP +V DQIE AI YIKSLE KLK+DEEKKE + RR    
Sbjct: 1   MKSLYSKLNSLLPTHHSN-ELPLSVLDQIEEAIKYIKSLELKLKKDEEKKERFTRR---- 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGL-EDRSLFYDTIRILNEER 213
                SSSSSY A   + NRN PEL+IKEMG AVEVVL+TGL EDR +FY+ I I  EER
Sbjct: 61  -----SSSSSYMAPTRSRNRNGPELRIKEMGSAVEVVLSTGLEEDRFIFYEIIHIFYEER 120

Query: 214 AEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           AEI+NVSYS++ N++LYSL+AEIEDVV++FG TK   ER+ +LVY  +N
Sbjct: 121 AEIVNVSYSVVGNSVLYSLYAEIEDVVYEFGATKP-TERIKRLVYGWEN 158

[Close]
BLAST of CsaV3_6G012850 vs. NCBI nr
Match: XP_022140719.1 (transcription factor bHLH162-like [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 7.4e-41
Identity = 103/177 (58.19%), Postives = 123/177 (69.49%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ERKVMEKNRR +MK LYSKL SLLP    N  +   VSDQ+E AINYIKSLETKLK+ +
Sbjct: 26  VERKVMEKNRRNQMKLLYSKLKSLLPDQPSN--VAMNVSDQVEEAINYIKSLETKLKRQQ 85

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           EKKE  LR  + +S                  RN+PELKI+EMG AVEVVLT+GL D  +
Sbjct: 86  EKKEWLLRSGRSSSDDV--------------GRNLPELKIREMGSAVEVVLTSGLGDWFI 145

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVY 258
           FY  I I  EERA+IIN SYS+L  T+ Y+LHAEIEDVV++F G +KL ERL +LVY
Sbjct: 146 FYQIIHIFPEERAQIINASYSVLGTTVFYTLHAEIEDVVYEF-GARKLTERLKKLVY 185

[Close]
BLAST of CsaV3_6G012850 vs. NCBI nr
Match: XP_022948053.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 106/181 (58.56%), Postives = 130/181 (71.82%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ERKV+EKNRR +MK LYSKL+SLLP +Q  D  P TV DQIE AI YI+SL  KL + +
Sbjct: 19  VERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDS-PLTVLDQIEEAIKYIQSLTVKLDKVK 78

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           EKK    +R  M++P+ + SS            N+PELKIKEMG AVEVV  T L DR L
Sbjct: 79  EKK----KRILMSAPTRSPSS------------NLPELKIKEMGSAVEVVFMTELNDRFL 138

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPK 260
           FY+ IRI +EERAEIIN +YS+LD+T+LYSLHAEIEDV++ FG T KL ERL +L YE K
Sbjct: 139 FYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGAT-KLTERLKRLAYEWK 181

Query: 261 N 262
           +
Sbjct: 199 S 181

[Close]
BLAST of CsaV3_6G012850 vs. TAIR10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 65/177 (36.72%), Postives = 113/177 (63.84%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           ++RK +EKNRR +MKSLYS+L SLLP H   +  P T+ DQ++ A NYIK L+  +++  
Sbjct: 14  VDRKTVEKNRRMQMKSLYSELISLLPHHSSTE--PLTLPDQLDEAANYIKKLQVNVEKKR 73

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           E+K   +  + +   ++  SSS  S++ ++  R +P+++I+E G    + L T LE + +
Sbjct: 74  ERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFM 133

Query: 201 FYDTIRILNEE-RAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           F + IR+L EE  AEI +  YS++D+ + ++LH ++E+   D+G   ++ ERL ++V
Sbjct: 134 FCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDYGARSQIPERLEKIV 186

[Close]
BLAST of CsaV3_6G012850 vs. TAIR10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 47/177 (26.55%), Postives = 97/177 (54.80%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           M  +  E+ RR +M SLY+ L SLLP H +  +  R+ SDQ+  A+NYIK L+ K+K+  
Sbjct: 4   MMHRETERQRRQEMASLYASLRSLLPLHFIKGK--RSTSDQVNEAVNYIKYLQRKIKELS 63

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTT---GLED 200
            +++  +  S+ +   +++         I+   +V    +++    VE++L++   G + 
Sbjct: 64  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHV---VVRQCLVGVEIMLSSRCCGGQP 123

Query: 201 RSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIED--VVFDFGGTKKLIERL 253
           R  F   +++L+E    ++N   S++D+ ++Y++ AE+ D  ++ D    +K + R+
Sbjct: 124 R--FSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]
BLAST of CsaV3_6G012850 vs. TAIR10
Match: AT4G25400.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0 

Query: 84  KVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKK 143
           K +EK RR +M SLY+ L SLLP   +  Q  R+ SDQ++ A+NYI  L+  +K    K+
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEFI--QGKRSTSDQVKGAVNYIDYLQRNIKDINSKR 66

Query: 144 EGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYD 203
           +  +    + S  +  SS+      I+++     + I+     +E+VL+     ++ F  
Sbjct: 67  DDLV----LLSGRSFRSSNEQEWNEISNH-----VVIRPCLVGIEIVLSI---LQTPFSS 126

Query: 204 TIRILNEERAEIINVSYSLLDNTILYSLHAEIEDV 239
            +++L E    ++    S +++ ++++L AE+ D+
Sbjct: 127 VLQVLREHGLYVLGYICSSVNDRLIHTLQAEVNDL 147

[Close]
BLAST of CsaV3_6G012850 vs. TAIR10
Match: AT1G62975.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           M+ + +E+ RR ++ SL+ +L +LLP   +  Q  R+ SD I  A+NYIK L+ K+K+  
Sbjct: 76  MKHRDIERQRRQEVSSLFKRLRTLLPFQYI--QGKRSTSDHIVQAVNYIKDLQIKIKELN 135

Query: 141 EKK 144
           EK+
Sbjct: 136 EKR 136

[Close]
BLAST of CsaV3_6G012850 vs. TAIR10
Match: AT1G12540.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 5.2e-04
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 0 

Query: 82  ERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEE 141
           + K +E+ RR +  SL+  L  LLPS  +  +  R+ +D +  A+NYIK L+ K+K+  E
Sbjct: 78  KHKELERQRRQENTSLFKILRYLLPSQYIKGK--RSSADHVLEAVNYIKDLQKKIKEVSE 137

Query: 142 KKEGYLR-------RSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTG 201
           K++   R       R + +  S ASS+ S        + N+  + ++     +E+V++  
Sbjct: 138 KRDRIKRSITHPSSRGEFSIRSLASSTCS-----CVGDTNI-AVVVRPCLIGLEIVVSCC 197

Query: 202 LEDRSLFYDTIRILNEERA-EIINVSYSLLDNTILYSLHAEIED 238
               S     +++L +E+   I++   + L    ++++ +E+E+
Sbjct: 198 NRHESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEE 233

[Close]
BLAST of CsaV3_6G012850 vs. Swiss-Prot
Match: sp|F4JIJ7|BH162_ARATH (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 65/177 (36.72%), Postives = 113/177 (63.84%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           ++RK +EKNRR +MKSLYS+L SLLP H   +  P T+ DQ++ A NYIK L+  +++  
Sbjct: 14  VDRKTVEKNRRMQMKSLYSELISLLPHHSSTE--PLTLPDQLDEAANYIKKLQVNVEKKR 73

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           E+K   +  + +   ++  SSS  S++ ++  R +P+++I+E G    + L T LE + +
Sbjct: 74  ERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFM 133

Query: 201 FYDTIRILNEE-RAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           F + IR+L EE  AEI +  YS++D+ + ++LH ++E+   D+G   ++ ERL ++V
Sbjct: 134 FCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDYGARSQIPERLEKIV 186

[Close]
BLAST of CsaV3_6G012850 vs. Swiss-Prot
Match: sp|Q9FLI1|BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 47/177 (26.55%), Postives = 97/177 (54.80%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           M  +  E+ RR +M SLY+ L SLLP H +  +  R+ SDQ+  A+NYIK L+ K+K+  
Sbjct: 4   MMHRETERQRRQEMASLYASLRSLLPLHFIKGK--RSTSDQVNEAVNYIKYLQRKIKELS 63

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTT---GLED 200
            +++  +  S+ +   +++         I+   +V    +++    VE++L++   G + 
Sbjct: 64  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHV---VVRQCLVGVEIMLSSRCCGGQP 123

Query: 201 RSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIED--VVFDFGGTKKLIERL 253
           R  F   +++L+E    ++N   S++D+ ++Y++ AE+ D  ++ D    +K + R+
Sbjct: 124 R--FSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]
BLAST of CsaV3_6G012850 vs. Swiss-Prot
Match: sp|Q9STJ7|BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.5e-05
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0 

Query: 84  KVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKK 143
           K +EK RR +M SLY+ L SLLP   +  Q  R+ SDQ++ A+NYI  L+  +K    K+
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEFI--QGKRSTSDQVKGAVNYIDYLQRNIKDINSKR 66

Query: 144 EGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYD 203
           +  +    + S  +  SS+      I+++     + I+     +E+VL+     ++ F  
Sbjct: 67  DDLV----LLSGRSFRSSNEQEWNEISNH-----VVIRPCLVGIEIVLSI---LQTPFSS 126

Query: 204 TIRILNEERAEIINVSYSLLDNTILYSLHAEIEDV 239
            +++L E    ++    S +++ ++++L AE+ D+
Sbjct: 127 VLQVLREHGLYVLGYICSSVNDRLIHTLQAEVNDL 147

[Close]
BLAST of CsaV3_6G012850 vs. TrEMBL
Match: tr|A0A1S4DX24|A0A1S4DX24_CUCME (transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.0e-59
Identity = 132/168 (78.57%), Postives = 140/168 (83.33%), Query Frame = 0 

Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  NDQLPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 166

[Close]
BLAST of CsaV3_6G012850 vs. TrEMBL
Match: tr|A0A1S4DX34|A0A1S4DX34_CUCME (transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 130/168 (77.38%), Postives = 138/168 (82.14%), Query Frame = 0 

Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  N  LPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSN--LPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 164

[Close]
BLAST of CsaV3_6G012850 vs. TrEMBL
Match: tr|A0A2P5DNK8|A0A2P5DNK8_9ROSA (Basic helix-loop-helix transcription factor OS=Trema orientalis OX=63057 GN=TorBHLH56 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 82/176 (46.59%), Postives = 124/176 (70.45%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ER+++EKNRR +MK LYSKL+SLLP     + L  T+ DQI+ AINYIKSLETK+K+ +
Sbjct: 12  IERRIVEKNRRNQMKVLYSKLNSLLPPQISKEAL--TLPDQIDEAINYIKSLETKVKKSK 71

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           +KK+  L  +K  S    SS+ S + +  T +   P+++I EMG  +E+VL TG +++ +
Sbjct: 72  DKKKSLLGGTKKRS---YSSTFSDNMIMTTGSLRSPKIEIHEMGSVLEIVLITGQDNQFI 131

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           FY+ IRIL+EERA+++N  +S+L ++I + +HAEI D +F FG T K+ ERL + V
Sbjct: 132 FYEVIRILHEERADVVNAKFSVLGDSIFHVVHAEIADSIFAFGAT-KISERLKRFV 181

[Close]
BLAST of CsaV3_6G012850 vs. TrEMBL
Match: tr|V4U3N5|V4U3N5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016466mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.6e-30
Identity = 79/176 (44.89%), Postives = 119/176 (67.61%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ERK +EKNRR +MK+LYS L SLLP+    ++L  ++ DQ++ AINYIK LETKLK+ +
Sbjct: 46  IERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEEL--SLPDQVDEAINYIKMLETKLKECK 105

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           +KKE    R +        S  + + L  + +   PE++I EMG  +EV+LT+G++D+ +
Sbjct: 106 KKKESLQGRER---SHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSGVDDQFI 165

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           FYD IRIL+++ AEI+N ++S++ NTI + +HAEI D +F FG   K+ ERL   V
Sbjct: 166 FYDVIRILHQDGAEILNANFSVVGNTIFHVIHAEIRDSMFGFGAA-KISERLKGFV 215

[Close]
BLAST of CsaV3_6G012850 vs. TrEMBL
Match: tr|A0A2P5BLK3|A0A2P5BLK3_PARAD (Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=PanBHLH56 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.7e-30
Identity = 80/176 (45.45%), Postives = 125/176 (71.02%), Query Frame = 0 

Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ER+++EKNRR +MK LYSKL+SLLP  Q++ + P T+ DQI+ AI YIKSLETK+K+ +
Sbjct: 12  IERRIVEKNRRNQMKVLYSKLNSLLPP-QISKEAP-TLPDQIDGAIKYIKSLETKVKKSK 71

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           +KK+  L  +K  S S+  S +   A   T +   P+++I EMG  +E+VL TG +++ +
Sbjct: 72  DKKKSLLGGTKKRSYSSTFSDNMIMA---TGSLRSPKIEIHEMGSVLEIVLITGQDNQFI 131

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           FY+ IR+L+EERA++++  +S+L ++I + +HAEI D +F FG T K+ ERL + V
Sbjct: 132 FYEVIRMLHEERADVVDAKFSVLGDSIFHVVHAEIADSMFAFGAT-KISERLKRFV 181

The following BLAST results are available for this feature:
BLAST of CsaV3_6G012850 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900532.16.0e-5978.57PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo][more]
XP_016900533.13.7e-5677.38PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo][more]
XP_022944108.12.3e-4263.31transcription factor bHLH162-like [Cucurbita moschata][more]
XP_022140719.17.4e-4158.19transcription factor bHLH162-like [Momordica charantia][more]
XP_022948053.11.6e-4058.56transcription factor bHLH162-like [Cucurbita moschata][more]
BLAST of CsaV3_6G012850 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G20970.11.9e-2736.72basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G51780.11.4e-0926.55basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G25400.12.5e-0627.10basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G62975.11.0e-0439.68basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G12540.15.2e-0424.39basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of CsaV3_6G012850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4JIJ7|BH162_ARATH3.5e-2636.72Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=... [more]
sp|Q9FLI1|BH036_ARATH2.5e-0826.55Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1[more]
sp|Q9STJ7|BH118_ARATH4.5e-0527.10Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=... [more]
BLAST of CsaV3_6G012850 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DX24|A0A1S4DX24_CUCME4.0e-5978.57transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990... [more]
tr|A0A1S4DX34|A0A1S4DX34_CUCME2.4e-5677.38transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990... [more]
tr|A0A2P5DNK8|A0A2P5DNK8_9ROSA6.0e-3146.59Basic helix-loop-helix transcription factor OS=Trema orientalis OX=63057 GN=TorB... [more]
tr|V4U3N5|V4U3N5_9ROSI6.6e-3044.89Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016466mg PE=4 ... [more]
tr|A0A2P5BLK3|A0A2P5BLK3_PARAD8.7e-3045.45Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR015660MASH1/Ascl1a-like
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G012850.1CsaV3_6G012850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 122..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..166
NoneNo IPR availablePANTHERPTHR13935:SF63SUBFAMILY NOT NAMEDcoord: 81..258
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 84..138
e-value: 7.5E-5
score: 32.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 84..133
e-value: 1.1E-6
score: 28.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 78..132
score: 10.353
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 81..157
e-value: 1.1E-7
score: 33.7
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 84..152
IPR015660Achaete-scute transcription factor-relatedPANTHERPTHR13935ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATEDcoord: 81..258

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G012850CSPI07G04710Wild cucumber (PI 183967)cpicucB412
CsaV3_6G012850Cucsa.119170Cucumber (Gy14) v1cgycucB159
CsaV3_6G012850Cucsa.147580Cucumber (Gy14) v1cgycucB224
CsaV3_6G012850CmaCh11G018830Cucurbita maxima (Rimu)cmacucB0168
CsaV3_6G012850CmaCh20G002040Cucurbita maxima (Rimu)cmacucB0681
CsaV3_6G012850CmaCh02G000960Cucurbita maxima (Rimu)cmacucB0743
CsaV3_6G012850CmoCh02G000960Cucurbita moschata (Rifu)cmocucB0733
CsaV3_6G012850CmoCh11G019630Cucurbita moschata (Rifu)cmocucB0152
CsaV3_6G012850Cp4.1LG05g14860Cucurbita pepo (Zucchini)cpecucB0937
CsaV3_6G012850CsGy7G004270Cucumber (Gy14) v2cgybcucB346
CsaV3_6G012850CsGy6G010460Cucumber (Gy14) v2cgybcucB298
CsaV3_6G012850Carg19128Silver-seed gourdcarcucB0757
CsaV3_6G012850Cla013555Watermelon (97103) v1cucwmB550
CsaV3_6G012850MELO3C013627Melon (DHL92) v3.5.1cucmeB449
CsaV3_6G012850MELO3C018728Melon (DHL92) v3.5.1cucmeB468
CsaV3_6G012850ClCG02G017710Watermelon (Charleston Gray)cucwcgB472
CsaV3_6G012850Lsi11G015660Bottle gourd (USVL1VR-Ls)cuclsiB457
CsaV3_6G012850Lsi10G009020Bottle gourd (USVL1VR-Ls)cuclsiB445
CsaV3_6G012850MELO3C018728.2Melon (DHL92) v3.6.1cucmedB458
CsaV3_6G012850MELO3C013627.2Melon (DHL92) v3.6.1cucmedB440
CsaV3_6G012850Cla97C02G043460Watermelon (97103) v2cucwmbB461
CsaV3_6G012850Bhi05G001627Wax gourdcucwgoB587
CsaV3_6G012850Bhi10G000853Wax gourdcucwgoB620
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_6G012850CsaV3_7G004510Cucumber (Chinese Long) v3cuccucB218
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G012850Silver-seed gourdcarcucB0032
CsaV3_6G012850Silver-seed gourdcarcucB0448
CsaV3_6G012850Cucurbita moschata (Rifu)cmocucB0664
CsaV3_6G012850Cucurbita pepo (Zucchini)cpecucB0354
CsaV3_6G012850Wild cucumber (PI 183967)cpicucB364