CsaV3_6G012850.1 (mRNA) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_6G012850.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transcription factor bhlh36
Location	chr6 : 8973920 .. 8976038 (-)
Sequence length	786

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATTTGATAAGATGGAATTAAAAAAATGATAATATAATTTGAAGAAATTTCTGCCCTTAAAACGGCTAATATGTACGGCTGGGTGATTGAGAAATTTCCACCATTACGGCCGACCAGGCGACCACGTGATGTGTGTGTCTATTTTCATCAAAGAGCAATAATATTATCCCCCCCAGATCCAATAAATATAAATATCACCTCCCCGGCTGCCTCCTTCATCTTTCCCTTCATTTTCATTTCTTTTTTAAAACGCTTCCCATTTTCATATAATCATCTAAATATTATTATTAATTATTCTTTATTCTTTCTGATGGAAAGAAAGGTCATGGAGAAAAATCGCAGAACCAAAATGAAATCTCTCTACTCCAAATTGAGTTCCCTTCTCCCATCCCATCAATTAAATGTTTGTTCTTTTCTTTTTCTCTCTCTTTCCTTTTCTTTTATATTTTTCCATATATTATTACAATAGGTCCTTCTTATCACTCAAACTTTTGTAGGATCAGTTGCCACGGACAGTTTCAGATCAGATAGAGGCAGCAATAAATTACATCAAATCATTGGAGACTAAGCTCAAACAGGATGAGGAGAAGAAGGAGGGATATTTAAGAAGATCCAAAATGGCTTCGCCCTCCACTGCCTCATCCTCATCGTCTTACTCGGCATTACCGATAACCCATAATAGGAACGTACCTGAATTGAAAATCAAAGAGATGGGCCCTGCTGTGGAGGTTGTTTTAACGACTGGATTGGAGGATCGCTCTTTGTTTTATGACACTATTCGTATCCTTAACGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATAACACAATCTTATATTCACTCCATGCAGAGGTATGTATATTCAACAACAATTTTAATACTATTAACACTATGCTCTATAATACCTACATTTTCTTTCAAATACTTTACACCTCCACTTTATATTATTATAACCCAAATTAAGGATTAGTTTTGATTGACTCCACCAAAAAAAATGTTCTTACCAGAAACTCACTTTTACTTAAATTTTGTTGGTGAAAGTTATTTAAAAGACACTTCAATAAAAAGTATTTTGAATGGCAAACATTCTAATTTTTTTCAAAAATGATTTATTTTTAAAACAACCTTTACAAATTAATTTTCTAAAAACCAAATGGATATCCAAATAGGCCTTATTCTTCTTTAGTAATGATTTTGGCTTGAGCTTCCTACTTTTAAACTTATGTTTATCTTCTACCAGAATTAATTTAACACAGTAATGGAATTCTAATAACAAAATGTAGTTATTCAAAAACTACCTTCTTTTTTAGTTTTTAAAATATTGGCTTTGTTTTAAATAAAATATTAGTGAAAAAGTAAATAATAAAACAAATAAATTTTTAATTGGACTTGTTTCATCGTTTTAATCTTCAAAAACTAAAACCCTAAAAAGTAAATAGTTTTCGAATTGTATTTTAATTTTTGTTATGTTTTCTATTTACGAAAATTGTGGTTTTCCACCATAATTTGTTACTATATATATATATATAATATTGATTATGTTCCCAAAACATTTGAATTATCAATCAAATTAAGAAACAAATTTAACTAAAATGACTTTTTTTTTTTTTTTTGGGTTATGTAATTAATGGAGTAGATTGAAGATGTGGTGTTCGACTTTGGAGGAACGAAGAAACTAATAGAGAGGCTAAACCAATTGGTTTACGAACCCAAGAATTAAGCAAGCAGAAATGCCAGTTTCCAGCCGTCACGCCTGAACCCATCCTCCGCCCAACCTTTCAAGGCCATGATCGAGTTTCCATCACCATTCTTAGACCCACTCAATTTTGAACCCAAATTTTAATTGTTATATTTATGCATGCGACCACCCTTTTATTAAGTACACAATATTATCCATGCTTTGTAGCTTGAGAAAACCTACGTATTAGAAACGCCATGGAAGTATCAAGTATGGGAGAATATTCAATATGGCCATTGTGTCATTCGTTATACTCCAAAATCATGTTTACATTTTCCTTCTACTTTTAGGTTTCCTTTATATTAAGAAATATTTGAGTTACACTCACATTGAATATCTTTTTGTTGAAATACATGATAATAT

mRNA sequence

ATGTACGGCTGGGTGATTGAGAAATTTCCACCATTACGGCCGACCAGGCGACCACGTGATGTGTGTGTCTATTTTCATCAAAGAGCAATAATATTATCCCCCCCAGATCCAATAAATATAAATATCACCTCCCCGGCTGCCTCCTTCATCTTTCCCTTCATTTTCATTTCTTTTTTAAAACGCTTCCCATTTTCATATAATCATCTAAATATTATTATTAATTATTCTTTATTCTTTCTGATGGAAAGAAAGGTCATGGAGAAAAATCGCAGAACCAAAATGAAATCTCTCTACTCCAAATTGAGTTCCCTTCTCCCATCCCATCAATTAAATGATCAGTTGCCACGGACAGTTTCAGATCAGATAGAGGCAGCAATAAATTACATCAAATCATTGGAGACTAAGCTCAAACAGGATGAGGAGAAGAAGGAGGGATATTTAAGAAGATCCAAAATGGCTTCGCCCTCCACTGCCTCATCCTCATCGTCTTACTCGGCATTACCGATAACCCATAATAGGAACGTACCTGAATTGAAAATCAAAGAGATGGGCCCTGCTGTGGAGGTTGTTTTAACGACTGGATTGGAGGATCGCTCTTTGTTTTATGACACTATTCGTATCCTTAACGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATAACACAATCTTATATTCACTCCATGCAGAGATTGAAGATGTGGTGTTCGACTTTGGAGGAACGAAGAAACTAATAGAGAGGCTAAACCAATTGGTTTACGAACCCAAGAATTAA

Coding sequence (CDS)

ATGTACGGCTGGGTGATTGAGAAATTTCCACCATTACGGCCGACCAGGCGACCACGTGATGTGTGTGTCTATTTTCATCAAAGAGCAATAATATTATCCCCCCCAGATCCAATAAATATAAATATCACCTCCCCGGCTGCCTCCTTCATCTTTCCCTTCATTTTCATTTCTTTTTTAAAACGCTTCCCATTTTCATATAATCATCTAAATATTATTATTAATTATTCTTTATTCTTTCTGATGGAAAGAAAGGTCATGGAGAAAAATCGCAGAACCAAAATGAAATCTCTCTACTCCAAATTGAGTTCCCTTCTCCCATCCCATCAATTAAATGATCAGTTGCCACGGACAGTTTCAGATCAGATAGAGGCAGCAATAAATTACATCAAATCATTGGAGACTAAGCTCAAACAGGATGAGGAGAAGAAGGAGGGATATTTAAGAAGATCCAAAATGGCTTCGCCCTCCACTGCCTCATCCTCATCGTCTTACTCGGCATTACCGATAACCCATAATAGGAACGTACCTGAATTGAAAATCAAAGAGATGGGCCCTGCTGTGGAGGTTGTTTTAACGACTGGATTGGAGGATCGCTCTTTGTTTTATGACACTATTCGTATCCTTAACGAGGAACGAGCTGAGATCATCAATGTCAGTTATTCTCTTCTTGATAACACAATCTTATATTCACTCCATGCAGAGATTGAAGATGTGGTGTTCGACTTTGGAGGAACGAAGAAACTAATAGAGAGGCTAAACCAATTGGTTTACGAACCCAAGAATTAA

Protein sequence

MYGWVIEKFPPLRPTRRPRDVCVYFHQRAIILSPPDPININITSPAASFIFPFIFISFLKRFPFSYNHLNIIINYSLFFLMERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN

Homology

[Close]

BLAST of CsaV3_6G012850.1 vs. NCBI nr
Match: XP_016900532.1 (PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 6.0e-59
Identity = 132/168 (78.57%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  NDQLPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 166

[Close]

BLAST of CsaV3_6G012850.1 vs. NCBI nr
Match: XP_016900533.1 (PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 3.7e-56
Identity = 130/168 (77.38%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  N  LPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSN--LPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 164

[Close]

BLAST of CsaV3_6G012850.1 vs. NCBI nr
Match: XP_022944108.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 182.2 bits (461), Expect = 2.3e-42
Identity = 107/169 (63.31%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLP+H  N +LP +V DQIE AI YIKSLE KLK+DEEKKE + RR    
Sbjct: 1   MKSLYSKLNSLLPTHHSN-ELPLSVLDQIEEAIKYIKSLELKLKKDEEKKERFTRR---- 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGL-EDRSLFYDTIRILNEER 213
                SSSSSY A   + NRN PEL+IKEMG AVEVVL+TGL EDR +FY+ I I  EER
Sbjct: 61  -----SSSSSYMAPTRSRNRNGPELRIKEMGSAVEVVLSTGLEEDRFIFYEIIHIFYEER 120

Query: 214 AEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           AEI+NVSYS++ N++LYSL+AEIEDVV++FG TK   ER+ +LVY  +N
Sbjct: 121 AEIVNVSYSVVGNSVLYSLYAEIEDVVYEFGATKP-TERIKRLVYGWEN 158

[Close]

BLAST of CsaV3_6G012850.1 vs. NCBI nr
Match: XP_022140719.1 (transcription factor bHLH162-like [Momordica charantia])

HSP 1 Score: 177.2 bits (448), Expect = 7.4e-41
Identity = 103/177 (58.19%), Postives = 123/177 (69.49%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ERKVMEKNRR +MK LYSKL SLLP    N  +   VSDQ+E AINYIKSLETKLK+ +
Sbjct: 26  VERKVMEKNRRNQMKLLYSKLKSLLPDQPSN--VAMNVSDQVEEAINYIKSLETKLKRQQ 85

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           EKKE  LR  + +S                  RN+PELKI+EMG AVEVVLT+GL D  +
Sbjct: 86  EKKEWLLRSGRSSSDDV--------------GRNLPELKIREMGSAVEVVLTSGLGDWFI 145

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVY 258
           FY  I I  EERA+IIN SYS+L  T+ Y+LHAEIEDVV++F G +KL ERL +LVY
Sbjct: 146 FYQIIHIFPEERAQIINASYSVLGTTVFYTLHAEIEDVVYEF-GARKLTERLKKLVY 185

[Close]

BLAST of CsaV3_6G012850.1 vs. NCBI nr
Match: XP_022948053.1 (transcription factor bHLH162-like [Cucurbita moschata])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 106/181 (58.56%), Postives = 130/181 (71.82%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ERKV+EKNRR +MK LYSKL+SLLP +Q  D  P TV DQIE AI YI+SL  KL + +
Sbjct: 19  VERKVLEKNRRNQMKLLYSKLNSLLPPNQSTDS-PLTVLDQIEEAIKYIQSLTVKLDKVK 78

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           EKK    +R  M++P+ + SS            N+PELKIKEMG AVEVV  T L DR L
Sbjct: 79  EKK----KRILMSAPTRSPSS------------NLPELKIKEMGSAVEVVFMTELNDRFL 138

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPK 260
           FY+ IRI +EERAEIIN +YS+LD+T+LYSLHAEIEDV++ FG T KL ERL +L YE K
Sbjct: 139 FYEIIRIFHEERAEIINATYSVLDDTVLYSLHAEIEDVMYAFGAT-KLTERLKRLAYEWK 181

Query: 261 N 262
           +
Sbjct: 199 S 181

[Close]

BLAST of CsaV3_6G012850.1 vs. TAIR10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 65/177 (36.72%), Postives = 113/177 (63.84%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           ++RK +EKNRR +MKSLYS+L SLLP H   +  P T+ DQ++ A NYIK L+  +++  
Sbjct: 14  VDRKTVEKNRRMQMKSLYSELISLLPHHSSTE--PLTLPDQLDEAANYIKKLQVNVEKKR 73

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           E+K   +  + +   ++  SSS  S++ ++  R +P+++I+E G    + L T LE + +
Sbjct: 74  ERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFM 133

Query: 201 FYDTIRILNEE-RAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           F + IR+L EE  AEI +  YS++D+ + ++LH ++E+   D+G   ++ ERL ++V
Sbjct: 134 FCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDYGARSQIPERLEKIV 186

[Close]

BLAST of CsaV3_6G012850.1 vs. TAIR10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 47/177 (26.55%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           M  +  E+ RR +M SLY+ L SLLP H +  +  R+ SDQ+  A+NYIK L+ K+K+  
Sbjct: 4   MMHRETERQRRQEMASLYASLRSLLPLHFIKGK--RSTSDQVNEAVNYIKYLQRKIKELS 63

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTT---GLED 200
            +++  +  S+ +   +++         I+   +V    +++    VE++L++   G + 
Sbjct: 64  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHV---VVRQCLVGVEIMLSSRCCGGQP 123

Query: 201 RSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIED--VVFDFGGTKKLIERL 253
           R  F   +++L+E    ++N   S++D+ ++Y++ AE+ D  ++ D    +K + R+
Sbjct: 124 R--FSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]

BLAST of CsaV3_6G012850.1 vs. TAIR10
Match: AT4G25400.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 84  KVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKK 143
           K +EK RR +M SLY+ L SLLP   +  Q  R+ SDQ++ A+NYI  L+  +K    K+
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEFI--QGKRSTSDQVKGAVNYIDYLQRNIKDINSKR 66

Query: 144 EGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYD 203
           +  +    + S  +  SS+      I+++     + I+     +E+VL+     ++ F  
Sbjct: 67  DDLV----LLSGRSFRSSNEQEWNEISNH-----VVIRPCLVGIEIVLSI---LQTPFSS 126

Query: 204 TIRILNEERAEIINVSYSLLDNTILYSLHAEIEDV 239
            +++L E    ++    S +++ ++++L AE+ D+
Sbjct: 127 VLQVLREHGLYVLGYICSSVNDRLIHTLQAEVNDL 147

[Close]

BLAST of CsaV3_6G012850.1 vs. TAIR10
Match: AT1G62975.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-04
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           M+ + +E+ RR ++ SL+ +L +LLP   +  Q  R+ SD I  A+NYIK L+ K+K+  
Sbjct: 76  MKHRDIERQRRQEVSSLFKRLRTLLPFQYI--QGKRSTSDHIVQAVNYIKDLQIKIKELN 135

Query: 141 EKK 144
           EK+
Sbjct: 136 EKR 136

[Close]

BLAST of CsaV3_6G012850.1 vs. TAIR10
Match: AT1G12540.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 5.2e-04
Identity = 40/164 (24.39%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 82  ERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEE 141
           + K +E+ RR +  SL+  L  LLPS  +  +  R+ +D +  A+NYIK L+ K+K+  E
Sbjct: 78  KHKELERQRRQENTSLFKILRYLLPSQYIKGK--RSSADHVLEAVNYIKDLQKKIKEVSE 137

Query: 142 KKEGYLR-------RSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTG 201
           K++   R       R + +  S ASS+ S        + N+  + ++     +E+V++  
Sbjct: 138 KRDRIKRSITHPSSRGEFSIRSLASSTCS-----CVGDTNI-AVVVRPCLIGLEIVVSCC 197

Query: 202 LEDRSLFYDTIRILNEERA-EIINVSYSLLDNTILYSLHAEIED 238
               S     +++L +E+   I++   + L    ++++ +E+E+
Sbjct: 198 NRHESCLSSVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEE 233

[Close]

BLAST of CsaV3_6G012850.1 vs. Swiss-Prot
Match: sp|F4JIJ7|BH162_ARATH (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 65/177 (36.72%), Postives = 113/177 (63.84%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           ++RK +EKNRR +MKSLYS+L SLLP H   +  P T+ DQ++ A NYIK L+  +++  
Sbjct: 14  VDRKTVEKNRRMQMKSLYSELISLLPHHSSTE--PLTLPDQLDEAANYIKKLQVNVEKKR 73

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           E+K   +  + +   ++  SSS  S++ ++  R +P+++I+E G    + L T LE + +
Sbjct: 74  ERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFM 133

Query: 201 FYDTIRILNEE-RAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           F + IR+L EE  AEI +  YS++D+ + ++LH ++E+   D+G   ++ ERL ++V
Sbjct: 134 FCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEE--HDYGARSQIPERLEKIV 186

[Close]

BLAST of CsaV3_6G012850.1 vs. Swiss-Prot
Match: sp|Q9FLI1|BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-08
Identity = 47/177 (26.55%), Postives = 97/177 (54.80%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           M  +  E+ RR +M SLY+ L SLLP H +  +  R+ SDQ+  A+NYIK L+ K+K+  
Sbjct: 4   MMHRETERQRRQEMASLYASLRSLLPLHFIKGK--RSTSDQVNEAVNYIKYLQRKIKELS 63

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTT---GLED 200
            +++  +  S+ +   +++         I+   +V    +++    VE++L++   G + 
Sbjct: 64  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHV---VVRQCLVGVEIMLSSRCCGGQP 123

Query: 201 RSLFYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIED--VVFDFGGTKKLIERL 253
           R  F   +++L+E    ++N   S++D+ ++Y++ AE+ D  ++ D    +K + R+
Sbjct: 124 R--FSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]

BLAST of CsaV3_6G012850.1 vs. Swiss-Prot
Match: sp|Q9STJ7|BH118_ARATH (Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.5e-05
Identity = 42/155 (27.10%), Postives = 82/155 (52.90%), Query Frame = 0


Query: 84  KVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKK 143
           K +EK RR +M SLY+ L SLLP   +  Q  R+ SDQ++ A+NYI  L+  +K    K+
Sbjct: 7   KEIEKRRRQEMASLYASLRSLLPLEFI--QGKRSTSDQVKGAVNYIDYLQRNIKDINSKR 66

Query: 144 EGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYD 203
           +  +    + S  +  SS+      I+++     + I+     +E+VL+     ++ F  
Sbjct: 67  DDLV----LLSGRSFRSSNEQEWNEISNH-----VVIRPCLVGIEIVLSI---LQTPFSS 126

Query: 204 TIRILNEERAEIINVSYSLLDNTILYSLHAEIEDV 239
            +++L E    ++    S +++ ++++L AE+ D+
Sbjct: 127 VLQVLREHGLYVLGYICSSVNDRLIHTLQAEVNDL 147

[Close]

BLAST of CsaV3_6G012850.1 vs. TrEMBL
Match: tr|A0A1S4DX24|A0A1S4DX24_CUCME (transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.0e-59
Identity = 132/168 (78.57%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  NDQLPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSNDQLPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 166

[Close]

BLAST of CsaV3_6G012850.1 vs. TrEMBL
Match: tr|A0A1S4DX34|A0A1S4DX34_CUCME (transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990944 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 130/168 (77.38%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 94  MKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDEEKKEGYLRRSKMA 153
           MKSLYSKL+SLLPSH  N  LPRTV+DQIEAAINYIKSLE KLKQDEEKKE YL      
Sbjct: 1   MKSLYSKLNSLLPSHHSN--LPRTVTDQIEAAINYIKSLEIKLKQDEEKKERYL-XXXXX 60

Query: 154 SPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSLFYDTIRILNEERA 213
                        L I+ NRNVPELKIKEMG AVEVVL TGLEDRS+FY+TIRILNEERA
Sbjct: 61  XXXXXXXXXXXXXLSISQNRNVPELKIKEMGSAVEVVLKTGLEDRSMFYETIRILNEERA 120

Query: 214 EIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLVYEPKN 262
           EIINVSYSLLD+TILYSLHAEIEDVV+DFGG +KLIERLNQLVYEPKN
Sbjct: 121 EIINVSYSLLDDTILYSLHAEIEDVVYDFGG-RKLIERLNQLVYEPKN 164

[Close]

BLAST of CsaV3_6G012850.1 vs. TrEMBL
Match: tr|A0A2P5DNK8|A0A2P5DNK8_9ROSA (Basic helix-loop-helix transcription factor OS=Trema orientalis OX=63057 GN=TorBHLH56 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 82/176 (46.59%), Postives = 124/176 (70.45%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ER+++EKNRR +MK LYSKL+SLLP     + L  T+ DQI+ AINYIKSLETK+K+ +
Sbjct: 12  IERRIVEKNRRNQMKVLYSKLNSLLPPQISKEAL--TLPDQIDEAINYIKSLETKVKKSK 71

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           +KK+  L  +K  S    SS+ S + +  T +   P+++I EMG  +E+VL TG +++ +
Sbjct: 72  DKKKSLLGGTKKRS---YSSTFSDNMIMTTGSLRSPKIEIHEMGSVLEIVLITGQDNQFI 131

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           FY+ IRIL+EERA+++N  +S+L ++I + +HAEI D +F FG T K+ ERL + V
Sbjct: 132 FYEVIRILHEERADVVNAKFSVLGDSIFHVVHAEIADSIFAFGAT-KISERLKRFV 181

[Close]

BLAST of CsaV3_6G012850.1 vs. TrEMBL
Match: tr|V4U3N5|V4U3N5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016466mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.6e-30
Identity = 79/176 (44.89%), Postives = 119/176 (67.61%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ERK +EKNRR +MK+LYS L SLLP+    ++L  ++ DQ++ AINYIK LETKLK+ +
Sbjct: 46  IERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEEL--SLPDQVDEAINYIKMLETKLKECK 105

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           +KKE    R +        S  + + L  + +   PE++I EMG  +EV+LT+G++D+ +
Sbjct: 106 KKKESLQGRER---SHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSGVDDQFI 165

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           FYD IRIL+++ AEI+N ++S++ NTI + +HAEI D +F FG   K+ ERL   V
Sbjct: 166 FYDVIRILHQDGAEILNANFSVVGNTIFHVIHAEIRDSMFGFGAA-KISERLKGFV 215

[Close]

BLAST of CsaV3_6G012850.1 vs. TrEMBL
Match: tr|A0A2P5BLK3|A0A2P5BLK3_PARAD (Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=PanBHLH56 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.7e-30
Identity = 80/176 (45.45%), Postives = 125/176 (71.02%), Query Frame = 0


Query: 81  MERKVMEKNRRTKMKSLYSKLSSLLPSHQLNDQLPRTVSDQIEAAINYIKSLETKLKQDE 140
           +ER+++EKNRR +MK LYSKL+SLLP  Q++ + P T+ DQI+ AI YIKSLETK+K+ +
Sbjct: 12  IERRIVEKNRRNQMKVLYSKLNSLLPP-QISKEAP-TLPDQIDGAIKYIKSLETKVKKSK 71

Query: 141 EKKEGYLRRSKMASPSTASSSSSYSALPITHNRNVPELKIKEMGPAVEVVLTTGLEDRSL 200
           +KK+  L  +K  S S+  S +   A   T +   P+++I EMG  +E+VL TG +++ +
Sbjct: 72  DKKKSLLGGTKKRSYSSTFSDNMIMA---TGSLRSPKIEIHEMGSVLEIVLITGQDNQFI 131

Query: 201 FYDTIRILNEERAEIINVSYSLLDNTILYSLHAEIEDVVFDFGGTKKLIERLNQLV 257
           FY+ IR+L+EERA++++  +S+L ++I + +HAEI D +F FG T K+ ERL + V
Sbjct: 132 FYEVIRMLHEERADVVDAKFSVLGDSIFHVVHAEIADSMFAFGAT-KISERLKRFV 181

The following BLAST results are available for this feature:

BLAST of CsaV3_6G012850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900532.1	6.0e-59	78.57	PREDICTED: transcription factor bHLH36-like isoform X1 [Cucumis melo]	[more]
XP_016900533.1	3.7e-56	77.38	PREDICTED: transcription factor bHLH36-like isoform X2 [Cucumis melo]	[more]
XP_022944108.1	2.3e-42	63.31	transcription factor bHLH162-like [Cucurbita moschata]	[more]
XP_022140719.1	7.4e-41	58.19	transcription factor bHLH162-like [Momordica charantia]	[more]
XP_022948053.1	1.6e-40	58.56	transcription factor bHLH162-like [Cucurbita moschata]	[more]

BLAST of CsaV3_6G012850.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20970.1	1.9e-27	36.72	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	1.4e-09	26.55	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25400.1	2.5e-06	27.10	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G62975.1	1.0e-04	39.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G12540.1	5.2e-04	24.39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of CsaV3_6G012850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4JIJ7\|BH162_ARATH	3.5e-26	36.72	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
sp\|Q9FLI1\|BH036_ARATH	2.5e-08	26.55	Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1	[more]
sp\|Q9STJ7\|BH118_ARATH	4.5e-05	27.10	Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=...	[more]

BLAST of CsaV3_6G012850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DX24\|A0A1S4DX24_CUCME	4.0e-59	78.57	transcription factor bHLH36-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
tr\|A0A1S4DX34\|A0A1S4DX34_CUCME	2.4e-56	77.38	transcription factor bHLH36-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107990...	[more]
tr\|A0A2P5DNK8\|A0A2P5DNK8_9ROSA	6.0e-31	46.59	Basic helix-loop-helix transcription factor OS=Trema orientalis OX=63057 GN=TorB...	[more]
tr\|V4U3N5\|V4U3N5_9ROSI	6.6e-30	44.89	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016466mg PE=4 ...	[more]
tr\|A0A2P5BLK3\|A0A2P5BLK3_PARAD	8.7e-30	45.45	Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046983	protein dimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006357	regulation of transcription from RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR015660	MASH1/Ascl1a-like
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G012850	CsaV3_6G012850	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G012850.1	CsaV3_6G012850.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G012850.1.cds3	CsaV3_6G012850.1.cds3	CDS
CsaV3_6G012850.1.cds2	CsaV3_6G012850.1.cds2	CDS
CsaV3_6G012850.1.cds1	CsaV3_6G012850.1.cds1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G012850.1.exon3	CsaV3_6G012850.1.exon3	exon
CsaV3_6G012850.1.exon2	CsaV3_6G012850.1.exon2	exon
CsaV3_6G012850.1.exon1	CsaV3_6G012850.1.exon1	exon

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..166
None	No IPR available	PANTHER	PTHR13935:SF63	SUBFAMILY NOT NAMED	coord: 81..258
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 84..138 e-value: 7.5E-5 score: 32.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 84..133 e-value: 1.1E-6 score: 28.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 78..132 score: 10.353
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 81..157 e-value: 1.1E-7 score: 33.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 84..152
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 81..258