MELO3C012814 (gene) Melon (DHL92) v3.5.1

NameMELO3C012814
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Locationchr4 : 12455525 .. 12460034 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTATCAGTTTCTTGAGTCCTCAATCATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTTACAATGGAACAACAATGGCTGATGATTTTAATGCTGTTATAAGTTATACAATAAGGACTTGACATTTGGTTTGATTTTTGTAGTTTCGGTTGATTTTCTTTTGCTCATTTGAGATTGTGAGATTGTGAGATTGTGGAAATTAGGAGGGTCGTGCCTGGCTTCTTATATAAATTTTGCATTTGTGTATTTCAGATCGAGTTTTTAAGTTGGTGACTTCTTCGAATTCTCTTTCTCCTATACGTTATGAATTATGATCACAACTTCGTTTGTTGGCACGAATCTGTAGATAATTAAGATGTTTGGTTTGATCAACGCATAAAGGTCCCAAATTCAGCCGGAAGGAACTGTTTGTGAACTAGTTAAACTAAAAATGGAACCACTACATTAAGAAATGCATTGGAAATTTGAATCTTCAATTAGGAGATTAACTTGTCCTAGTCTTCTTTCTGGTTACCAACAGCCGTATTTATAACTTACAACCCCAATTGACAATCATTTAGTTTTTTCATTCGAGTATTTTGGAAAGGTGTTCTCGTTTTTCCTTTACAATTGTCCTAGTCTATTAGTTTTCATCTTTTTTCAAAGTAACATTTCAAGCCTTAGCCAAATTTCAAAACAAAAATTACTTTTTTTTTTCCAAAACTTGTTGTGCATAACGAAACAAAGAAACTCGCCAGTGGAAATAGTGTTTATAAACTAAAATTTCAAAAAACTGAAAACCAAAGACCTACCCCATTTGATCACAATTTCGTTTTTAGTTTTCTTTGAAATTTATGTTTGTCTTCTCTCAGATTCTTTTATCATGATTTTCACCCTTTTAGATAATCATTTAAATTCTTAGAGAGTTTCAAAAACAAAAAAAAAAAATGGGATTTCAGAAACTACTTTTTCCAATTTTCAAAACTTGACTAGGTTTTTGAAAACATTTATAGAAAGCAAAGAAAAAAGAAAAGAAAAGTTGGGAATAGTGTTTAAAGACTTGATTTTCAAAAACCAAATGGTTATCAAATAGAGCTGCCGTTTTTTTGTTGTGTTTGTTTTTTTTGAGGGAGTTGAGACTTGAGTGAGTCTGGTGGTGTTCTAACTTAGTGTCTCGTTTTCCGTTACACTTGTTATTCAACCTGAAATATGGCGTGTTCTAACTGTATATGGTTCTTTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTAAGTAATGATAATTAACATCCAAATTCACAATTATTCCCTTTCTCCTTTCCTCATGTAATTTGCCTTTTCTTGTGAGCAATAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTAAGTTGTCCTTATTAAACTTCGAAAAATTTAAATTGATGAAGTAAAATGGTTGCCTTTCTAGTCCTTGAACTGGTAATAACTTTTTGGTTTCAATACTGCTTCGAGCCCAAACATTCCGTTTTAGTTCATTTTGGTGGTTGTACTTTTAAAATGTTCATTTAGTCCTTATAGTTTTAACTAGTGACCATTTTGATCTTTTTGTTCAAATGTTATCATAATTTGTATCCGTAATAAAACCATCAAGTACAAATATATGACTGCTGACTAAACCATCATGGACTAGTCTAGTAGTAAAAAAGGAGACATAGTCTCAATAACTAACTAAGAGGTCATGAGTTCAATTCATGGTGGCCACATATCTAAGAATTAATTTTCCTTCAGATTAGTTGAGGTGCATGTAAGCTGGCTCAAACATTAACGAATATCATAGAATATATATATATATGTGTGTGTGAGAAATTTAGTGAATGAATTGTTAAAAAGTGAAATGAAAATGAAGGGACCAAAATAGTTTTCTTATATATGTATAGAGATCAACATGGATATTTTAAAAGTTCATGCACCAAAAGGAAAAAGGAAAGAAAGTTGAAAGTACATGGATCGCAAAAGAACCAAAATTGGGAGTGCAGGAGCAAAGTAGTATTTAAGCCTAAACTTTTTCTTGTCTAATCTTCTAATGGAATAGATTGTTTCATTTCATTATTCAGCTGTCATAAGAAAAGGAAATAAACTTTTTTTCCAACTAATTCACCATACATAGGTAGTGGTTGTTTTTTTTTTTTTTCATTTTTCTTGCCATCCGTAGCCTAGTTATGTTCATGTTTGTTCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACCCCCTCTTCTTTCGAGTGAGTACACGTCTTGAATCAATTTAGATATTCCATTAATTATTTAACTCAATTTTCATGGATACGAAATTCTTAATAATTTAGCAAGAAAGGTTATAACTTAATTCCTTCTAAAGTAGAGAAAAATAGAGGAAAATAAGAGATGAAAAACCAATCATATTTTTCTATCCATTTGATTCTACCATTTCTATTTAATATTATGTTATTCCTTGCAATGAAGGTAGTGGTGTACACATGAAAAATTATACAGTAATCGTCATAATCTTAATAAAAGATCTGAATTTGCAGTTTTAATTGAAGTTTAGAGTTCCAAGTAATACAAATAACGTCTCCAAACGTCTCCAAAGTTTAGAGCTTTTTTCCGTCTCTATTTATTTGAAACTATTTGACGTGCTTTTTGTGGTTGCAAATCTTCCATTCTAATGATTGAGATGAACTTCAAATCTCATTGTGATCTACTTTTGAGCTGCCATCAAACGTCCCATATCTAATTCAAGTCCTATTTGTTTCAACTTTCAATGAACTACACAATCTCTCATCATATATATATTTTTATATATGTAGACAGAATCCACTTTTTAATAAATAAGGTCAACAATGTTGTCACTTCAGTAATTTTAGTTTTTTTTTTTTCCCTTCGTATGCTAACTTAATGTCAAACTATACGGCAGAATCATAATTATGTAATTCATTGCGGTCTTACATAGTATCAATTTTTTTTGTTCTTTTCTATTTTTAAAATTTATGCTACATACAATTTTCTTGTCATGGTTTTGACGTTTTATGAAAAAAATACTTGAGTTCATAATCAAATTTTAAAATCTTTTATTTTTTAAAATTTACCTCGATTTCTGAAAATATTAATATAAGGGAGATAACAAAACATAGAAATTTATGGGTGGAACTTGGAAGTAGTGTTTTTAAAACCTTTATTTTAAAAAACCAAACACTAATGCCCATTTTATAATCATTTAGTTTTTGTTAGGAATACAAAACATGTAAATACTACTTTCACCCATAAGTTTTTATGTTTTGTTATCTACCTATCACTAGTATTCTAAAAAACAAAGTCAAATTTTAAAAGCTAAAATTATAGTTTTTATAATTTGATTAAGAATTCAAGTATTTCTTAAACGGAGGTGAAAACTATAATCGAAAAATTGGGAAGAAACAAACATAAATTTCAAAACAGACAACTAAAATATGGGTTGTTATGTTAGTTATATACATGATCATATTAATCTAATCTTTGTTTTCAACCTTACTCTTAAACAGGTACTCTGAAATTGAGTCCTTACCATGGAGTGGACTAAAGTTTGGTTATCATCTTTAAACTATCAAAGATAC

mRNA sequence

AATTATCAGTTTCTTGAGTCCTCAATCATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACCCCCTCTTCTTTCGAGTACTCTGAAATTGAGTCCTTACCATGGAGTGGACTAAAGTTTGGTTATCATCTTTAAACTATCAAAGATAC

Coding sequence (CDS)

ATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

Protein sequence

MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL*
BLAST of MELO3C012814 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.4e-26
Identity = 75/250 (30.00%), Postives = 119/250 (47.60%), Query Frame = 1

Query: 2   FFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENN 61
           FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN 
Sbjct: 202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFT 121
            +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  V  A + ++ F 
Sbjct: 262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query: 122 EQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK 181
            +LL RGVL+VP+                     AT + ++  +FD R +     SK K 
Sbjct: 322 TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKG 381

Query: 182 --LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQL 229
              ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +L
Sbjct: 382 EIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKEL 441

BLAST of MELO3C012814 vs. TrEMBL
Match: A0A0A0L902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.6e-125
Identity = 228/237 (96.20%), Postives = 236/237 (99.58%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPESF+IEAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE+LLERGVLVVPLATDVTTLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

BLAST of MELO3C012814 vs. TrEMBL
Match: A0A0D2Q2X4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.0e-104
Identity = 186/237 (78.48%), Postives = 216/237 (91.14%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASG+LGGLIATTQL+ +L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 90  MFFYLTFIASGSLGGLIATTQLISSLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 149

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
            AKNAQLARLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SF++E+FK SEPF
Sbjct: 150 TAKNAQLARLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 209

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD  + + +FDE E++K+IT KRK+LW+L PVY++EW+ WLDEQK
Sbjct: 210 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 269

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVG+PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 270 KLAGISPESPVYLSLRLDGRVRGSGVGFPPWNALVAQLPPVKGLWSGLLDGMDGRVL 326

BLAST of MELO3C012814 vs. TrEMBL
Match: A0A0B0PHJ8_GOSAR (Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F383_04136 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 7.6e-104
Identity = 185/237 (78.06%), Postives = 214/237 (90.30%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIATTQL+ +L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 106 MFFYLAFIASGSLGGLIATTQLIASLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 165

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
            AKNAQL RLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SF++E+FK SEPF
Sbjct: 166 TAKNAQLTRLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 225

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD  + + +FDE E++K+IT KRK+LW+L PVY++EW+ WLDEQK
Sbjct: 226 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 285

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 286 KLAGISPESPVYLSLRLDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 342

BLAST of MELO3C012814 vs. TrEMBL
Match: A0A061DQ88_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 7.6e-104
Identity = 185/237 (78.06%), Postives = 214/237 (90.30%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG LGGLIA TQL+ AL N +R+ EVPD+L  LGID  AV++FAFLYFREN
Sbjct: 108 MFFYLAFIASGALGGLIAFTQLIAALTNPARSSEVPDLLTSLGIDVAAVSIFAFLYFREN 167

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
            AKNAQ+ARLSREESLSNLKLRVDQNK+I +S+LRGIARLVICAGP SF++E+FKSSEPF
Sbjct: 168 TAKNAQIARLSREESLSNLKLRVDQNKIISVSSLRGIARLVICAGPASFILESFKSSEPF 227

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE LL+RGVLV+P ATD  +L+ +FD+ E++K+IT+KRK+LW+LTPVY++EWS WLDEQK
Sbjct: 228 TEGLLQRGVLVIPFATDGNSLSLDFDDSEDMKEITTKRKRLWQLTPVYVSEWSEWLDEQK 287

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVS +SPVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 288 KLAGVSPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGLWSGLLDGMDGRVL 344

BLAST of MELO3C012814 vs. TrEMBL
Match: B9IBD7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18550g PE=4 SV=2)

HSP 1 Score: 376.3 bits (965), Expect = 2.7e-101
Identity = 180/237 (75.95%), Postives = 211/237 (89.03%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL F+ASG LGGLIATT+L+ ALAN SRA EVP+ILKGLGID GA A+FAFLY+REN
Sbjct: 94  MFFYLAFLASGALGGLIATTRLIAALANPSRAAEVPEILKGLGIDIGAAAIFAFLYYREN 153

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
            AKN QLARLSREE+LSNLKLRVD+ K+I +S+LRG+ARLVICAGP  F++E+FK SEPF
Sbjct: 154 KAKNVQLARLSREENLSNLKLRVDEKKIISVSSLRGVARLVICAGPAPFILESFKLSEPF 213

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           T+ LL+RGVLVVP A++    +FEFDE EE+K++T+KRK+LW+L P+Y++EWS WLDEQK
Sbjct: 214 TQSLLDRGVLVVPFASNGNLPSFEFDEGEEMKELTTKRKRLWQLAPIYVSEWSNWLDEQK 273

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVS +SPVYLSLRMDGRVRGSGVGYPPWNA VAQLPP KG+WSGLLDGMDGRVL
Sbjct: 274 KLAGVSPESPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPSKGMWSGLLDGMDGRVL 330

BLAST of MELO3C012814 vs. TAIR10
Match: AT4G28740.1 (AT4G28740.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 327.4 bits (838), Expect = 7.3e-90
Identity = 161/238 (67.65%), Postives = 196/238 (82.35%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIAT++L+GALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN
Sbjct: 110 MFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNEN 169

Query: 61  NAKNAQLARLSREESLSNLKLRVDQN-KVIPISTLRGIARLVICAGPESFVIEAFKSSEP 120
             KNAQ+ARLSREE+L  LK+RV++N KVI +  LRG+ARLVICAGP  F+ EAFK S+ 
Sbjct: 170 KTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKE 229

Query: 121 FTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDITSKRKKLWRLTPVYMTEWSAWLDE 180
           +T+ L+ERGV+VV  ATD  +   EFDE +   ++++ +RKKLWR+TPV++ EW  WL+E
Sbjct: 230 YTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNE 289

Query: 181 QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 237
           QKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Sbjct: 290 QKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

BLAST of MELO3C012814 vs. TAIR10
Match: AT1G02910.1 (AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 75/250 (30.00%), Postives = 119/250 (47.60%), Query Frame = 1

Query: 2   FFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENN 61
           FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN 
Sbjct: 202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFT 121
            +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  V  A + ++ F 
Sbjct: 262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query: 122 EQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK 181
            +LL RGVL+VP+                     AT + ++  +FD R +     SK K 
Sbjct: 322 TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKG 381

Query: 182 --LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQL 229
              ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +L
Sbjct: 382 EIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKEL 441

BLAST of MELO3C012814 vs. NCBI nr
Match: gi|659093061|ref|XP_008447350.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 1.3e-128
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 221

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

BLAST of MELO3C012814 vs. NCBI nr
Match: gi|449468602|ref|XP_004152010.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 456.8 bits (1174), Expect = 2.3e-125
Identity = 228/237 (96.20%), Postives = 236/237 (99.58%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPESF+IEAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE+LLERGVLVVPLATDVTTLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

BLAST of MELO3C012814 vs. NCBI nr
Match: gi|823127258|ref|XP_012434346.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 386.7 bits (992), Expect = 2.9e-104
Identity = 186/237 (78.48%), Postives = 216/237 (91.14%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASG+LGGLIATTQL+ +L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 90  MFFYLTFIASGSLGGLIATTQLISSLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 149

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
            AKNAQLARLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SF++E+FK SEPF
Sbjct: 150 TAKNAQLARLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 209

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD  + + +FDE E++K+IT KRK+LW+L PVY++EW+ WLDEQK
Sbjct: 210 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 269

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVG+PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 270 KLAGISPESPVYLSLRLDGRVRGSGVGFPPWNALVAQLPPVKGLWSGLLDGMDGRVL 326

BLAST of MELO3C012814 vs. NCBI nr
Match: gi|1009148806|ref|XP_015892134.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 386.7 bits (992), Expect = 2.9e-104
Identity = 191/237 (80.59%), Postives = 217/237 (91.56%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFY+ FIASG+LGGLIATT+L+GAL+N SRA EVP+ILKGLGID GAV+LFAFLY+REN
Sbjct: 96  MFFYIAFIASGSLGGLIATTRLIGALSNPSRAAEVPEILKGLGIDVGAVSLFAFLYYREN 155

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVD+ ++IP+S+LRG ARLVICAGPESFV EAF+ SEPF
Sbjct: 156 NAKNAQLARLSREESLSNLKLRVDEKRIIPVSSLRGNARLVICAGPESFVKEAFRLSEPF 215

Query: 121 TEQLLERGVLVVPLATD-VTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQ 180
           TE+LLERGVLVVP ATD     +FEFDE EE KDIT+KRK+LW+L PVY++EW+ WLDEQ
Sbjct: 216 TERLLERGVLVVPFATDGYLPPSFEFDESEESKDITAKRKRLWQLGPVYVSEWTKWLDEQ 275

Query: 181 KKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 237
           KKLAGVS++SPVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKG+WSGLLDG DGRV
Sbjct: 276 KKLAGVSTESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWSGLLDGFDGRV 332

BLAST of MELO3C012814 vs. NCBI nr
Match: gi|728845017|gb|KHG24460.1| (Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum])

HSP 1 Score: 384.8 bits (987), Expect = 1.1e-103
Identity = 185/237 (78.06%), Postives = 214/237 (90.30%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIATTQL+ +L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 106 MFFYLAFIASGSLGGLIATTQLIASLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 165

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 120
            AKNAQL RLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SF++E+FK SEPF
Sbjct: 166 TAKNAQLTRLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 225

Query: 121 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD  + + +FDE E++K+IT KRK+LW+L PVY++EW+ WLDEQK
Sbjct: 226 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 285

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 286 KLAGISPESPVYLSLRLDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 342

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LPA1_ARATH2.4e-2630.00Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 P... [more]
Match NameE-valueIdentityDescription
A0A0A0L902_CUCSA1.6e-12596.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1[more]
A0A0D2Q2X4_GOSRA2.0e-10478.48Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1[more]
A0A0B0PHJ8_GOSAR7.6e-10478.06Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F38... [more]
A0A061DQ88_THECC7.6e-10478.06Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1[more]
B9IBD7_POPTR2.7e-10175.95Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18550g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT4G28740.17.3e-9067.65 FUNCTIONS IN: molecular_function unknown[more]
AT1G02910.11.4e-2730.00 tetratricopeptide repeat (TPR)-containing protein[more]
Match NameE-valueIdentityDescription
gi|659093061|ref|XP_008447350.1|1.3e-128100.00PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo][more]
gi|449468602|ref|XP_004152010.1|2.3e-12596.20PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus][more]
gi|823127258|ref|XP_012434346.1|2.9e-10478.48PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii][more]
gi|1009148806|ref|XP_015892134.1|2.9e-10480.59PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Ziziphus jujuba][more]
gi|728845017|gb|KHG24460.1|1.1e-10378.06Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021883LPA1-like
IPR021883LPA1-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU58369melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012814T2MELO3C012814T2mRNA
MELO3C012814T1MELO3C012814T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU58369MU58369transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021883Protein of unknown function DUF3493PFAMPF11998DUF3493coord: 84..161
score: 6.7
NoneNo IPR availablePANTHERPTHR35498FAMILY NOT NAMEDcoord: 72..338
score: 2.9E
NoneNo IPR availablePANTHERPTHR35498:SF1SUBFAMILY NOT NAMEDcoord: 72..338
score: 2.9E

The following gene(s) are paralogous to this gene:

None