Lsi05G010710 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTAAGTCATTATAATTAACATCCATTTTCACAATTGTTCTCCTTCTCCTTCCCTCATGTAATTTTCCTTTTCTTGTGAACAATAGGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTAAGTTGTCCTTGTTGTTAAACTTTGAATTCAAATTGATGAAGTGTAAAATGGTTTTCTTTTTAATGCTTGAACTCCCAATCAAGTTGTGTCGTAGGTATTGATTTTTTTTATTTAAGTACTACTTTGGCCCTATACTTTTAGTTTTGATTCATTTTAGTTGTCTGTTCAAAATGTTCATTTAGCCTCGTAGTTTTAACAAGTGGTCAATTTCTCCCTATACGCAGATGTTTAACACAACTTGTATAAATGAAGGGACCAAAATAGTTATTTTATGTAAGTATAGAGACAAAAATGGACATTTTCAAAGTACATGCACCAAAATGAACAATAGTTGAAATTGCATAAATTGAAAAGAACCAAAGTCGGAAGTATAGAAACTGGAGTAGTATTAGTTTTGTAATGAAATATATTGTTTCATTAATCATCATTCATGAGTTATCCAATTTGGAGTCGCATAGTTGGTAATGTAAACTGCACAGAAAAAAAAGGAAAGGAAAGGAAAGGAAATAAACTTTTTGCTGAATCTAATGCCAAAACTAGTTAATCTTACAGAAGTTAACCAAAGTAGAATTTAAAGCTAAACTTTTTCTATGTTAATGTTTGTTCATGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGAAGACAAACACTTCCTCTTCTTCCGAGTGAGTACTCTTCTTTCATACTTGAATCAATTTAGACACTCCGTTAATCATTTATAACTATTTTCACTTAATTTCATTAAGGTCAATTTACAATCACCTAAATAAAATTTGGTTAAATTACAAATTTAGTCCCTATAGTTTTATCAGACCATGAGGACTAAATTCCAACTTTCTCCAAACCATAGGGACTAAATCTGTTTCTGCTAAAATCTTAAGAAAGTAGCAAGAAAAATTATAACTTAATTCTTTCTATATAAGTGGAGAAAAACAGATGAAAATGAGAAAATGGAAAACCAATCATATTAATGAAAAATCTCTACTATTCATTTGATTCTAGCATTTCTCTCTAATATTATGTTAATCCATACATTTAAAGAAGTCTTAAGATTATGCACTAACAATTGTAAAACGAAATCTTAACAGAGGGTTTAAATTGATTAACTTACTAGAGTTTTTAATCTAATCAAACACCAGTGATATAAATACAAACTCTATAAGTTTAGGGTTAGATGTTGATTTTCTCTCTATTTATTTGAAACTTTAAGACATGCTTATCTTCCATTTTAATGATTGAGATAAACTTAAAACCTCCTCTGTGATCTCCTTTTGAGCTGGCATCAAACCTTCCATATCTAATTCAAGCCCTATTTGTTTCAACTTCCAAGGCACTACAGAATCCCTTATCTCACGCATATATATATATACATACATACATATATATACACGCACATACATACATACAGTAATTTTAGCTTCTTTTTTTTTTGCGTACAAACTTAATGTCAAACTATACGGCTGAATCATATTGGTGTAATTCATCTGTTGCCAAATCTCTTGCCACAAACAGGGAAGATTGTACTATTTTGAAATTCATGCTACCGCTTTCTTATTTTGGTTTTCACCTTTATTTTTTTAATATTCGTGAATGTCTTCTCACGGGACAACCCGTTTGACCCTACAACATTTGGGTGTCAAGAAAACGCGTAGAAAATTAATTCTTAGGTAGGTGGTCACCATGGATTGAACTCATGACTTCTTAGCCATTTATTGAGACTTTATCTCCTTTTTTACCACTAAATCAATCCAGGATGGTTTTTGGTTTTCACCTTTTATAAAGAATATTGTCAAATTCTAAAATCAAAAATAAGATTTTAAAAACTACTTTTCTTTGTTTTCAAATTTTGGCTTGGTTTTTAGAAATATTAGTTTTAGTGGATAACAAATCATCGTAGCTTATAAGTGGAAGTGGTATTTATAAACTTAATTTTCAAAAACCAAAAACTAAAGCTTTGTCTGATAACCATTTAATTTATGGTTTATGGTTTTAAAAACCAAGTTCATAAACATTACTTTCACTCATAAGTTTCTATGTTTTGATATCAAATTACTATTAATGTTTTCATAAACCAAGTAAATTTTGAAAACTAAAACAAATAGTTTTAAAAAATTTGTTTATGTTTCTATAATTTAACTAGGAATTCAAGTGTTTCTTTAACAAAGATGTGAAAACCATAATTGAAAAATTGGGGAGAAACAAGCATAAATTTCAAAAACAGAAAACTAAAAACGAAATTGTTATCAAACAGGGCCTAAATAGTTGGTTATCAAACGGGATCTGTATTAATCTGTTCTTGTTTTCAACCTTGTTCTTAAATGAGTATTATTGAGTGGAGTAAAGTTTTGCTATCATCTCGAAGCCATCCTGGGTACTTCCATTACAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAAAACAGGTTTTTGTAAATTCTAAAGAGATAAAATGGAGAGATTTAGCTTATCTGACATCATAATTTTCATTTTTTGTTATCTATAATCCAATATTCTTAGTTCTAAGTTATTTTTTGCTTTTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTAT AGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGAAGACAAACACTTCCTCTTCTTCCGAGTGAGTACTCTTCTTTCATACTTGAATCAATTTAGACACTCCGTTAATCATTTATAACTATTTTCACTTAATTTCATTAAGGTCAATTTACAATCACCTAAATAAAATTTGGTTAAATTACAAATTTAGTCCCTATAGTTTTATCAGACCATGAGGACTAAATTCCAACTTTCTCCAAACCATAGGGACTAAATCTGTTTCTGCTAAAATCTTAAGAAAGTAGCAAGAAAAATTATAACTTAATTCTTTCTATATAAGTGGAGAAAAACAGATGAAAATGAGAAAATGGAAAACCAATCATATTAATGAAAAATCTCTACTATTCATTTGATTCTAGCATTTCTCTCTAATATTATGTTAATCCATACATTTAAAGAAGTCTTAAGATTATGCACTAACAATTGTAAAACGAAATCTTAACAGAGGGTTTAAATTGATTAACTTACTAGAGTTTTTAATCTAATCAAACACCAGTGATATAAATACAAACTCTATAAGTTTAGGGTTAGATGTTGATTTTCTCTCTATTTATTTGAAACTTTAAGACATGCTTATCTTCCATTTTAATGATTGAGATAAACTTAAAACCTCCTCTGTGATCTCCTTTTGAGCTGGCATCAAACCTTCCATATCTAATTCAAGCCCTATTTGTTTCAACTTCCAAGGCACTACAGAATCCCTTATCTCACGCATATATATATATACATACATACATATATATACACGCACATACATACATACAGTAATTTTAGCTTCTTTTTTTTTTGCGTACAAACTTAATGTCAAACTATACGGCTGAATCATATTGGTGTAATTCATCTGTTGCCAAATCTCTTGCCACAAACAGGGAAGATTGTACTATTTTGAAATTCATGCTACCGCTTTCTTATTTTGGTTTTCACCTTTATTTTTTTAATATTCGTGAATGTCTTCTCACGGGACAACCCGTTTGACCCTACAACATTTGGGTGTCAAGAAAACGCGTAGAAAATTAATTCTTAGGTAGGTGGTCACCATGGATTGAACTCATGACTTCTTAGCCATTTATTGAGACTTTATCTCCTTTTTTACCACTAAATCAATCCAGGATGGTTTTTGGTTTTCACCTTTTATAAAGAATATTGTCAAATTCTAAAATCAAAAATAAGATTTTAAAAACTACTTTTCTTTGTTTTCAAATTTTGGCTTGGTTTTTAGAAATATTAGTTTTAGTGGATAACAAATCATCGTAGCTTATAAGTGGAAGTGGTATTTATAAACTTAATTTTCAAAAACCAAAAACTAAAGCTTTGTCTGATAACCATTTAATTTATGGTTTATGGTTTTAAAAACCAAGTTCATAAACATTACTTTCACTCATAAGTTTCTATGTTTTGATATCAAATTACTATTAATGTTTTCATAAACCAAGTAAATTTTGAAAACTAAAACAAATAGTTTTAAAAAATTTGTTTATGTTTCTATAATTTAACTAGGAATTCAAGTGTTTCTTTAACAAAGATGTGAAAACCATAATTGAAAAATTGGGGAGAAACAAGCATAAATTTCAAAAACAGAAAACTAAAAACGAAATTGTTATCAAACAGGGCCTAAATAGTTGGTTATCAAACGGGATCTGTATTAATCTGTTCTTGTTTTCAACCTTGTTCTTAAATGAGTATTATTGAGTGGAGTAAAGTTTTGCTATCATCTCGAAGCCATCCTGGGTACTTCCATTACAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAAAACAGGTTTTTGTAAATTCTAAAGAGATAAAATGGAGAGATTTAGCTTATCTGACATCATAATTTTCATTTTTTGTTATCTATAATCCAATATTCTTAGTTCTAAGTTATTTTTTGCTTTTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTAT ATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGA MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
BLAST of Lsi05G010710 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 2.6e-25 Identity = 73/250 (29.20%), Postives = 120/250 (48.00%), Query Frame = 1
BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A0A0L902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 5.0e-124 Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 1
BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A061DQ88_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 5.2e-105 Identity = 189/237 (79.75%), Postives = 215/237 (90.72%), Query Frame = 1
BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A0D2Q2X4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.5e-104 Identity = 188/237 (79.32%), Postives = 217/237 (91.56%), Query Frame = 1
BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A0B0PHJ8_GOSAR (Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F383_04136 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 2.6e-104 Identity = 188/237 (79.32%), Postives = 215/237 (90.72%), Query Frame = 1
BLAST of Lsi05G010710 vs. TrEMBL
Match: F6HZU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g04900 PE=4 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 1.9e-102 Identity = 188/237 (79.32%), Postives = 210/237 (88.61%), Query Frame = 1
BLAST of Lsi05G010710 vs. TAIR10
Match: AT4G28740.1 (AT4G28740.1 FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 323.9 bits (829), Expect = 8.0e-89 Identity = 160/238 (67.23%), Postives = 198/238 (83.19%), Query Frame = 1
BLAST of Lsi05G010710 vs. TAIR10
Match: AT1G02910.1 (AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein) HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26 Identity = 73/250 (29.20%), Postives = 120/250 (48.00%), Query Frame = 1
BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|659093061|ref|XP_008447350.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo]) HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124 Identity = 228/237 (96.20%), Postives = 235/237 (99.16%), Query Frame = 1
BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|449468602|ref|XP_004152010.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]) HSP 1 Score: 451.8 bits (1161), Expect = 7.2e-124 Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 1
BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|590715027|ref|XP_007050079.1| (Uncharacterized protein isoform 1 [Theobroma cacao]) HSP 1 Score: 388.7 bits (997), Expect = 7.5e-105 Identity = 189/237 (79.75%), Postives = 215/237 (90.72%), Query Frame = 1
BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|823127258|ref|XP_012434346.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii]) HSP 1 Score: 387.1 bits (993), Expect = 2.2e-104 Identity = 188/237 (79.32%), Postives = 217/237 (91.56%), Query Frame = 1
BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|728845017|gb|KHG24460.1| (Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum]) HSP 1 Score: 386.3 bits (991), Expect = 3.7e-104 Identity = 188/237 (79.32%), Postives = 215/237 (90.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |