Lsi05G010710 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G010710
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionProtein LOW PSII ACCUMULATION 1, chloroplastic
Locationchr05 : 18270199 .. 18273612 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTAAGTCATTATAATTAACATCCATTTTCACAATTGTTCTCCTTCTCCTTCCCTCATGTAATTTTCCTTTTCTTGTGAACAATAGGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTAAGTTGTCCTTGTTGTTAAACTTTGAATTCAAATTGATGAAGTGTAAAATGGTTTTCTTTTTAATGCTTGAACTCCCAATCAAGTTGTGTCGTAGGTATTGATTTTTTTTATTTAAGTACTACTTTGGCCCTATACTTTTAGTTTTGATTCATTTTAGTTGTCTGTTCAAAATGTTCATTTAGCCTCGTAGTTTTAACAAGTGGTCAATTTCTCCCTATACGCAGATGTTTAACACAACTTGTATAAATGAAGGGACCAAAATAGTTATTTTATGTAAGTATAGAGACAAAAATGGACATTTTCAAAGTACATGCACCAAAATGAACAATAGTTGAAATTGCATAAATTGAAAAGAACCAAAGTCGGAAGTATAGAAACTGGAGTAGTATTAGTTTTGTAATGAAATATATTGTTTCATTAATCATCATTCATGAGTTATCCAATTTGGAGTCGCATAGTTGGTAATGTAAACTGCACAGAAAAAAAAGGAAAGGAAAGGAAAGGAAATAAACTTTTTGCTGAATCTAATGCCAAAACTAGTTAATCTTACAGAAGTTAACCAAAGTAGAATTTAAAGCTAAACTTTTTCTATGTTAATGTTTGTTCATGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGAAGACAAACACTTCCTCTTCTTCCGAGTGAGTACTCTTCTTTCATACTTGAATCAATTTAGACACTCCGTTAATCATTTATAACTATTTTCACTTAATTTCATTAAGGTCAATTTACAATCACCTAAATAAAATTTGGTTAAATTACAAATTTAGTCCCTATAGTTTTATCAGACCATGAGGACTAAATTCCAACTTTCTCCAAACCATAGGGACTAAATCTGTTTCTGCTAAAATCTTAAGAAAGTAGCAAGAAAAATTATAACTTAATTCTTTCTATATAAGTGGAGAAAAACAGATGAAAATGAGAAAATGGAAAACCAATCATATTAATGAAAAATCTCTACTATTCATTTGATTCTAGCATTTCTCTCTAATATTATGTTAATCCATACATTTAAAGAAGTCTTAAGATTATGCACTAACAATTGTAAAACGAAATCTTAACAGAGGGTTTAAATTGATTAACTTACTAGAGTTTTTAATCTAATCAAACACCAGTGATATAAATACAAACTCTATAAGTTTAGGGTTAGATGTTGATTTTCTCTCTATTTATTTGAAACTTTAAGACATGCTTATCTTCCATTTTAATGATTGAGATAAACTTAAAACCTCCTCTGTGATCTCCTTTTGAGCTGGCATCAAACCTTCCATATCTAATTCAAGCCCTATTTGTTTCAACTTCCAAGGCACTACAGAATCCCTTATCTCACGCATATATATATATACATACATACATATATATACACGCACATACATACATACAGTAATTTTAGCTTCTTTTTTTTTTGCGTACAAACTTAATGTCAAACTATACGGCTGAATCATATTGGTGTAATTCATCTGTTGCCAAATCTCTTGCCACAAACAGGGAAGATTGTACTATTTTGAAATTCATGCTACCGCTTTCTTATTTTGGTTTTCACCTTTATTTTTTTAATATTCGTGAATGTCTTCTCACGGGACAACCCGTTTGACCCTACAACATTTGGGTGTCAAGAAAACGCGTAGAAAATTAATTCTTAGGTAGGTGGTCACCATGGATTGAACTCATGACTTCTTAGCCATTTATTGAGACTTTATCTCCTTTTTTACCACTAAATCAATCCAGGATGGTTTTTGGTTTTCACCTTTTATAAAGAATATTGTCAAATTCTAAAATCAAAAATAAGATTTTAAAAACTACTTTTCTTTGTTTTCAAATTTTGGCTTGGTTTTTAGAAATATTAGTTTTAGTGGATAACAAATCATCGTAGCTTATAAGTGGAAGTGGTATTTATAAACTTAATTTTCAAAAACCAAAAACTAAAGCTTTGTCTGATAACCATTTAATTTATGGTTTATGGTTTTAAAAACCAAGTTCATAAACATTACTTTCACTCATAAGTTTCTATGTTTTGATATCAAATTACTATTAATGTTTTCATAAACCAAGTAAATTTTGAAAACTAAAACAAATAGTTTTAAAAAATTTGTTTATGTTTCTATAATTTAACTAGGAATTCAAGTGTTTCTTTAACAAAGATGTGAAAACCATAATTGAAAAATTGGGGAGAAACAAGCATAAATTTCAAAAACAGAAAACTAAAAACGAAATTGTTATCAAACAGGGCCTAAATAGTTGGTTATCAAACGGGATCTGTATTAATCTGTTCTTGTTTTCAACCTTGTTCTTAAATGAGTATTATTGAGTGGAGTAAAGTTTTGCTATCATCTCGAAGCCATCCTGGGTACTTCCATTACAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAAAACAGGTTTTTGTAAATTCTAAAGAGATAAAATGGAGAGATTTAGCTTATCTGACATCATAATTTTCATTTTTTGTTATCTATAATCCAATATTCTTAGTTCTAAGTTATTTTTTGCTTTTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTAT

mRNA sequence

AGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGAAGACAAACACTTCCTCTTCTTCCGAGTGAGTACTCTTCTTTCATACTTGAATCAATTTAGACACTCCGTTAATCATTTATAACTATTTTCACTTAATTTCATTAAGGTCAATTTACAATCACCTAAATAAAATTTGGTTAAATTACAAATTTAGTCCCTATAGTTTTATCAGACCATGAGGACTAAATTCCAACTTTCTCCAAACCATAGGGACTAAATCTGTTTCTGCTAAAATCTTAAGAAAGTAGCAAGAAAAATTATAACTTAATTCTTTCTATATAAGTGGAGAAAAACAGATGAAAATGAGAAAATGGAAAACCAATCATATTAATGAAAAATCTCTACTATTCATTTGATTCTAGCATTTCTCTCTAATATTATGTTAATCCATACATTTAAAGAAGTCTTAAGATTATGCACTAACAATTGTAAAACGAAATCTTAACAGAGGGTTTAAATTGATTAACTTACTAGAGTTTTTAATCTAATCAAACACCAGTGATATAAATACAAACTCTATAAGTTTAGGGTTAGATGTTGATTTTCTCTCTATTTATTTGAAACTTTAAGACATGCTTATCTTCCATTTTAATGATTGAGATAAACTTAAAACCTCCTCTGTGATCTCCTTTTGAGCTGGCATCAAACCTTCCATATCTAATTCAAGCCCTATTTGTTTCAACTTCCAAGGCACTACAGAATCCCTTATCTCACGCATATATATATATACATACATACATATATATACACGCACATACATACATACAGTAATTTTAGCTTCTTTTTTTTTTGCGTACAAACTTAATGTCAAACTATACGGCTGAATCATATTGGTGTAATTCATCTGTTGCCAAATCTCTTGCCACAAACAGGGAAGATTGTACTATTTTGAAATTCATGCTACCGCTTTCTTATTTTGGTTTTCACCTTTATTTTTTTAATATTCGTGAATGTCTTCTCACGGGACAACCCGTTTGACCCTACAACATTTGGGTGTCAAGAAAACGCGTAGAAAATTAATTCTTAGGTAGGTGGTCACCATGGATTGAACTCATGACTTCTTAGCCATTTATTGAGACTTTATCTCCTTTTTTACCACTAAATCAATCCAGGATGGTTTTTGGTTTTCACCTTTTATAAAGAATATTGTCAAATTCTAAAATCAAAAATAAGATTTTAAAAACTACTTTTCTTTGTTTTCAAATTTTGGCTTGGTTTTTAGAAATATTAGTTTTAGTGGATAACAAATCATCGTAGCTTATAAGTGGAAGTGGTATTTATAAACTTAATTTTCAAAAACCAAAAACTAAAGCTTTGTCTGATAACCATTTAATTTATGGTTTATGGTTTTAAAAACCAAGTTCATAAACATTACTTTCACTCATAAGTTTCTATGTTTTGATATCAAATTACTATTAATGTTTTCATAAACCAAGTAAATTTTGAAAACTAAAACAAATAGTTTTAAAAAATTTGTTTATGTTTCTATAATTTAACTAGGAATTCAAGTGTTTCTTTAACAAAGATGTGAAAACCATAATTGAAAAATTGGGGAGAAACAAGCATAAATTTCAAAAACAGAAAACTAAAAACGAAATTGTTATCAAACAGGGCCTAAATAGTTGGTTATCAAACGGGATCTGTATTAATCTGTTCTTGTTTTCAACCTTGTTCTTAAATGAGTATTATTGAGTGGAGTAAAGTTTTGCTATCATCTCGAAGCCATCCTGGGTACTTCCATTACAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAAAACAGGTTTTTGTAAATTCTAAAGAGATAAAATGGAGAGATTTAGCTTATCTGACATCATAATTTTCATTTTTTGTTATCTATAATCCAATATTCTTAGTTCTAAGTTATTTTTTGCTTTTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTAT

Coding sequence (CDS)

ATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATTGGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAGCCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGACGGGAGAGTTCTTTGA

Protein sequence

MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
BLAST of Lsi05G010710 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-25
Identity = 73/250 (29.20%), Postives = 120/250 (48.00%), Query Frame = 1

Query: 2   FFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN 61
           FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN 
Sbjct: 202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFT 121
            +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  +  A + ++ F 
Sbjct: 262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query: 122 ERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKR 181
             LL RGVL+VP+                     AT + ++  +FD R +  V     K 
Sbjct: 322 TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKG 381

Query: 182 KRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQL 229
           +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +L
Sbjct: 382 EIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKEL 441

BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A0A0L902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 5.0e-124
Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLVVPLATDV+TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A061DQ88_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 5.2e-105
Identity = 189/237 (79.75%), Postives = 215/237 (90.72%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG LGGLIA TQL+AAL N +R+ EVPD+L  LGID  AV++FAFLYFREN
Sbjct: 108 MFFYLAFIASGALGGLIAFTQLIAALTNPARSSEVPDLLTSLGIDVAAVSIFAFLYFREN 167

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
            AKNAQ+ARLSREESLSNLKLRVDQNK+I +S+LRGIARLVICAGP SFI+E+FKSSEPF
Sbjct: 168 TAKNAQIARLSREESLSNLKLRVDQNKIISVSSLRGIARLVICAGPASFILESFKSSEPF 227

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE LL+RGVLV+P ATD ++L  +FD+ E++K+ITTKRKRLW+LTPVY++EWS WLDEQK
Sbjct: 228 TEGLLQRGVLVIPFATDGNSLSLDFDDSEDMKEITTKRKRLWQLTPVYVSEWSEWLDEQK 287

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVS +SPVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 288 KLAGVSPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGLWSGLLDGMDGRVL 344

BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A0D2Q2X4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 1.5e-104
Identity = 188/237 (79.32%), Postives = 217/237 (91.56%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASG+LGGLIATTQL+++L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 90  MFFYLTFIASGSLGGLIATTQLISSLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 149

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
            AKNAQLARLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SFI+E+FK SEPF
Sbjct: 150 TAKNAQLARLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 209

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD ++   +FDE E++K+IT KRKRLW+L PVY++EW+ WLDEQK
Sbjct: 210 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 269

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVG+PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 270 KLAGISPESPVYLSLRLDGRVRGSGVGFPPWNALVAQLPPVKGLWSGLLDGMDGRVL 326

BLAST of Lsi05G010710 vs. TrEMBL
Match: A0A0B0PHJ8_GOSAR (Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F383_04136 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.6e-104
Identity = 188/237 (79.32%), Postives = 215/237 (90.72%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIATTQL+A+L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 106 MFFYLAFIASGSLGGLIATTQLIASLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 165

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
            AKNAQL RLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SFI+E+FK SEPF
Sbjct: 166 TAKNAQLTRLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 225

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD ++   +FDE E++K+IT KRKRLW+L PVY++EW+ WLDEQK
Sbjct: 226 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 285

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 286 KLAGISPESPVYLSLRLDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 342

BLAST of Lsi05G010710 vs. TrEMBL
Match: F6HZU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g04900 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.9e-102
Identity = 188/237 (79.32%), Postives = 210/237 (88.61%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG LGGLIATTQL+AAL NSSRA  VPDILKGLGID GAVA+FAFLY RE+
Sbjct: 92  MFFYLAFIASGALGGLIATTQLIAALTNSSRAPLVPDILKGLGIDIGAVAIFAFLYSRES 151

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           +AKNAQLARL+REESLSNLKLRVD+ KVI ++ LRGIARLVICAGP  FI E+FK S+PF
Sbjct: 152 SAKNAQLARLTREESLSNLKLRVDEKKVISVNDLRGIARLVICAGPAPFIAESFKLSQPF 211

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           T+ LL+RGVLVVP  TD     FE++E EE+KDITTKRKRLW+L PVY++EWS WLDEQK
Sbjct: 212 TQGLLDRGVLVVPFVTDGKLPSFEYEESEEMKDITTKRKRLWQLVPVYVSEWSKWLDEQK 271

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVS +SPVYLSLRMDGRVRGSGVGYPPWNA VAQLPP+KG+W+GLLDGMDGRVL
Sbjct: 272 KLAGVSPESPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPIKGMWTGLLDGMDGRVL 328

BLAST of Lsi05G010710 vs. TAIR10
Match: AT4G28740.1 (AT4G28740.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 323.9 bits (829), Expect = 8.0e-89
Identity = 160/238 (67.23%), Postives = 198/238 (83.19%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIAT++L+ ALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN
Sbjct: 110 MFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNEN 169

Query: 61  NAKNAQLARLSREESLSNLKLRVDQN-KVIPISTLRGIARLVICAGPESFIMEAFKSSEP 120
             KNAQ+ARLSREE+L  LK+RV++N KVI +  LRG+ARLVICAGP  FI EAFK S+ 
Sbjct: 170 KTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKE 229

Query: 121 FTERLLERGVLVVPLATDVSTLKFEFDEREEV-KDITTKRKRLWRLTPVYMTEWSAWLDE 180
           +T+ L+ERGV+VV  ATD ++   EFDE +   ++++ +RK+LWR+TPV++ EW  WL+E
Sbjct: 230 YTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNE 289

Query: 181 QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 237
           QKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Sbjct: 290 QKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

BLAST of Lsi05G010710 vs. TAIR10
Match: AT1G02910.1 (AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26
Identity = 73/250 (29.20%), Postives = 120/250 (48.00%), Query Frame = 1

Query: 2   FFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN 61
           FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN 
Sbjct: 202 FFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENK 261

Query: 62  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFT 121
            +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG +  +  A + ++ F 
Sbjct: 262 KEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFR 321

Query: 122 ERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKR 181
             LL RGVL+VP+                     AT + ++  +FD R +  V     K 
Sbjct: 322 TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKG 381

Query: 182 KRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQL 229
           +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +L
Sbjct: 382 EIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKEL 441

BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|659093061|ref|XP_008447350.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo])

HSP 1 Score: 453.8 bits (1166), Expect = 1.9e-124
Identity = 228/237 (96.20%), Postives = 235/237 (99.16%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE+LLERGVLVVPLATDV+TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|449468602|ref|XP_004152010.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 451.8 bits (1161), Expect = 7.2e-124
Identity = 227/237 (95.78%), Postives = 234/237 (98.73%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFREN
Sbjct: 102 MFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFREN 161

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
           NAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPESFI+EAFKSSEPF
Sbjct: 162 NAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPF 221

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TERLLERGVLVVPLATDV+TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK
Sbjct: 222 TERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 281

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 282 KLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|590715027|ref|XP_007050079.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 388.7 bits (997), Expect = 7.5e-105
Identity = 189/237 (79.75%), Postives = 215/237 (90.72%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG LGGLIA TQL+AAL N +R+ EVPD+L  LGID  AV++FAFLYFREN
Sbjct: 108 MFFYLAFIASGALGGLIAFTQLIAALTNPARSSEVPDLLTSLGIDVAAVSIFAFLYFREN 167

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
            AKNAQ+ARLSREESLSNLKLRVDQNK+I +S+LRGIARLVICAGP SFI+E+FKSSEPF
Sbjct: 168 TAKNAQIARLSREESLSNLKLRVDQNKIISVSSLRGIARLVICAGPASFILESFKSSEPF 227

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE LL+RGVLV+P ATD ++L  +FD+ E++K+ITTKRKRLW+LTPVY++EWS WLDEQK
Sbjct: 228 TEGLLQRGVLVIPFATDGNSLSLDFDDSEDMKEITTKRKRLWQLTPVYVSEWSEWLDEQK 287

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAGVS +SPVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 288 KLAGVSPESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGLWSGLLDGMDGRVL 344

BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|823127258|ref|XP_012434346.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 387.1 bits (993), Expect = 2.2e-104
Identity = 188/237 (79.32%), Postives = 217/237 (91.56%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYLTFIASG+LGGLIATTQL+++L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 90  MFFYLTFIASGSLGGLIATTQLISSLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 149

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
            AKNAQLARLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SFI+E+FK SEPF
Sbjct: 150 TAKNAQLARLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 209

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD ++   +FDE E++K+IT KRKRLW+L PVY++EW+ WLDEQK
Sbjct: 210 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 269

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVG+PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 270 KLAGISPESPVYLSLRLDGRVRGSGVGFPPWNALVAQLPPVKGLWSGLLDGMDGRVL 326

BLAST of Lsi05G010710 vs. NCBI nr
Match: gi|728845017|gb|KHG24460.1| (Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum])

HSP 1 Score: 386.3 bits (991), Expect = 3.7e-104
Identity = 188/237 (79.32%), Postives = 215/237 (90.72%), Query Frame = 1

Query: 1   MFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFREN 60
           MFFYL FIASG+LGGLIATTQL+A+L N +R+ EVPDIL GLGID GAV++FAFLYFREN
Sbjct: 106 MFFYLAFIASGSLGGLIATTQLIASLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFREN 165

Query: 61  NAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPF 120
            AKNAQL RLSREESLSNLKLRV+QNK+I +S+LRGIARLVIC+GP SFI+E+FK SEPF
Sbjct: 166 TAKNAQLTRLSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPF 225

Query: 121 TERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQK 180
           TE LLERGVLVVP ATD ++   +FDE E++K+IT KRKRLW+L PVY++EW+ WLDEQK
Sbjct: 226 TESLLERGVLVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQK 285

Query: 181 KLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 238
           KLAG+S +SPVYLSLR+DGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 286 KLAGISPESPVYLSLRLDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 342

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LPA1_ARATH2.6e-2529.20Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 P... [more]
Match NameE-valueIdentityDescription
A0A0A0L902_CUCSA5.0e-12495.78Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1[more]
A0A061DQ88_THECC5.2e-10579.75Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1[more]
A0A0D2Q2X4_GOSRA1.5e-10479.32Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1[more]
A0A0B0PHJ8_GOSAR2.6e-10479.32Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F38... [more]
F6HZU3_VITVI1.9e-10279.32Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g04900 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G28740.18.0e-8967.23 FUNCTIONS IN: molecular_function unknown[more]
AT1G02910.11.5e-2629.20 tetratricopeptide repeat (TPR)-containing protein[more]
Match NameE-valueIdentityDescription
gi|659093061|ref|XP_008447350.1|1.9e-12496.20PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo][more]
gi|449468602|ref|XP_004152010.1|7.2e-12495.78PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus][more]
gi|590715027|ref|XP_007050079.1|7.5e-10579.75Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|823127258|ref|XP_012434346.1|2.2e-10479.32PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii][more]
gi|728845017|gb|KHG24460.1|3.7e-10479.32Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021883LPA1-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G010710.1Lsi05G010710.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021883Protein of unknown function DUF3493PFAMPF11998DUF3493coord: 1..60
score: 1.2
NoneNo IPR availablePANTHERPTHR35498FAMILY NOT NAMEDcoord: 1..237
score: 5.8
NoneNo IPR availablePANTHERPTHR35498:SF1SUBFAMILY NOT NAMEDcoord: 1..237
score: 5.8

The following gene(s) are paralogous to this gene:

None