Cp4.1LG15g01170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g01170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionGlutamate--tRNA ligase, chloroplastic/mitochondrial
LocationCp4.1LG15 : 889128 .. 899363 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCGTAATTTGCGCGCGAAAGTTCATCGTTCTTTAAAACTGAAATCGCTCTGACGAGAAGTTTGATGATTTTAGGGCTCGAAGTTAATGGCGGCTCACGATGCTGTAAGATGACGCAGGTATGTTTCGGTGATTTTCTTATAGGGAAACCTCATATTATCCTAATTACTTTAAGCTAATATCGTTCATTAAACTAAGGATCGTTATCGGTCAGTCTCATAATCAGAAGTATCAGATTCTTTTTGTTAGCCGATTAGATTGGATTAGGTGTTTTTGTTGATCGATTCGATTCGTATATTCAATTTACTTCTTGTTTTATGCACGACAGTCCGATGATTCAAAGAATATATCTCGACATTTTTATTTCAGATTTTGTACGAGTTGCTACAGTCTTCTTTAAACTAAGGATCGTTATCGGTCAGTCTCATAATCAGGAGTATCAGATTCTTTTTGTTCGCCGATTAGATTGGATTAGATGTTTTTGTTGATCGATTCGATTCGTATATTCAATTTACCTCTTGTTTTATGCACGACGATCCGATGATTCAAAGAAAATATCTCGATATTTTTATTTCAGATTTTGTACGAGTTCCTACAGTCTTCTTTTTACTTGATTTCAGAATTTCGAGGATGATTTCGTGTAAGCAGTGGTTTATGCTGATGCGTGAACCGAGTATCTTCTGAACAAAATTTATCGGTATGTATTTTGATGAACCTTTTAGTTTTACTGAGTTGAACTTGTGAATCAATTTATTAAATAACCATACAACGAACTTGTTCTTGTCTGGATTCCATACTTCTAATATCTTTCATTTTTAAGTATTATAATTATAGTGATGTGTTCTTTATTTAATGAATACTATGTTTTGTTACAGATTTTCCTAATTCATAAAATAATATACATTCAAGAATCAAGTTTGCCTCCCCTAAGAACATTAGATCTATACTTGAGTTTTATTCATTTACAGATTGTTACATGCAATTAGGATCCCCCTGGCNATTTTTAGGAGATTATGTTCATTAGTTTGGTTTCTTACTGTTTCTTAGTAGTCTTCATTTCATGCAGGCCTAAGTTATTCTATTTGTTTATTTGTTTTTGGTCGTTACTTCACTGCAATGTACTCTGTTTAGTTTATACATTATGATATTTCTGGAATCATAGGTTTTTTTAAGTAAAATAAATGTTATCTAAGAGAAAATTCAATGAATAAAATAGATAAACAAATTTTTATATTAAATTGTTAATAATTAGTGGTTATAGGGCATGAACATCAATAGCAGTAATACTAGTTAAGGAATGAAAAAATAGCATTGCAATATTATAGTTAGATTTAGTGAGAATGAAGTAGTCACTTTTTTGTGATCCAAATACATCTTTTAAGGTATGTTTACTACAGAGAAGGTTAGGAATCACGACTCTCCACTATGATATTATCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCTCAAAAGGCCTCATACCAATCGAGATGTATTTCTTACGTATAAACCCATGATCATTCCCTAAATTAGCTAATGTGGGACTCCCTCCCAACAATTCTCAACAATCCTTCCCTCGAACATACCATAGAGTCTCTCCTAAGGCCTATAAACAACCGAATTTTGCTTTTTACTAAACCAAGAAACTAATGAACTACCAAGAAATTGACAATTGACAAGTACTGACAAGTACTGGCAAGTTTCACTAGTACTTTTACGATCAAGTAAGCTTTCGATAAAATTTTCATGGGAATATCTTACTGATTTAAACTCAACATTTTTAGGATACCACAATCTTAAATCAATAGTTTCAAATAAATATTTAAATATCCTTTTAGCAAATTGAAACTTAGCACAAATACATACACTAAACATAATATCTGGTCTACTAGTGGTTAAATAAAGTAGAGATCCAATCATACCTCAATAAGATTTAATGTCAACATATTTATCTTTTTCATCTTTGTCAAGCTACGTGCTCATGGTAGTTTTTGCAATCTTGTGTTCTTCAACCTTTTAAGTAAATCTTTAGTGTATTTCTCTTGATTGTTAAAGATACCATTTTTGAGTTGTTTGATTTGTAGGCGAGAGAAACTAAGCACTTTCATCATACTATCTCAACTCATTACGCATACATTTAGAAAATTATTCACCTAAAAAAGGAAGTAGATCTAAATATGATATCATCTACATATATTTGCACTAATAACATATCATTTTTTTTAATTTTAATAAAAAGAGTAGTGTTGAGTTTACCTATTTTAAAATCATTCCCAATAAGAAAATTACTAAGTTTATCGTACCAAGCTCGAGCTTGTTTTAAGCCATAATGAGCATTTTTCAACTTGATTTATGATGATACCATCCTTGAGTTGAAAAAGTCATGTCTATGGTATGATAGACTGGGTAATTTTCTTACCGGGAATGATTTTAAAATAGGTAAACTCGACACTGCTCTTTTTATTAAGATTAAAGAAAATGAGATGTTATTAGTGCAAGTATATGAAGATGATATCATATTTGGTTTTACTAATCTTCTTTATGTGAAGAATTTTTTAAATATATGCATGAGTTTGAGACGAGTATGATGGGAGAGTTTAGTTTCTTTGTTGGACTTCAAATCAAACATCTTAAGGATGGTATCATCGTAAATCGAGAGAAATACACACTAAAGATTTAATCAAAAGGTTCAACTTCGATGTAGGTACGATTGTAAAAACTCCCGTGAGCACGTCCACTAAGCTTGACAAAGATGAAAAAGGTAAATGTGTAGAGAAATACACACTAAAAATTTAATCAAAAGGTTCAACTTCGATGTAGGTACGATTGTAAAAACTCCCGTGAGCACGTCCACTAAGCTTCACAAAGATGAAAAAGGTAAATGTGTGGATATTAAATTTTATCGAAGTATGATTGGATCTCCTACTTTATTTAACCGCTAGTAAACTCGATATTATGTTTAGTGTATGATGTCTTCGTGCTCGGTTTCAATCTTGTCCTAAGGAATCTCATTTACCTGTTAAAAAAATATTTAAATATTTGCTTGGAACTATTGATTTAAGATTGTTGCATCCTAGAAATGTTAGTTTAAATTAGTAGGATATTCTTATGTGAATTTTGCGGAAAGCTTACTTGATCGTAAAAGTGGAATGTCATTCATTAGTTTCTTGGTTTAGTCAAAAGCTAAATTCGGTTGTCTTATCTAATACGAATGCAGAATATATTTCGATTGCTAATTCGGTTGTCATTCATTAGTTTTTTGTGATTTTGGATTAAAATTTGATAGTGCGCCTATATTTTGTGATAACACTAGTGCTTATCTACTACGGGAATATATTTTGGTTGCTAGTTGTTGTGCTCAAATATTTTGTGATAACACTAGTGCTTATCTACTACGGGAATATATTTTGGTTGCTAGTTGTGCTCAAATTTTTTGGATGAAACAAAGTTTTTGTGATTTTGAATTAAAATTTATAGTATGTATTTTGTGATAACACTAGTGCTTATCTACGGCGGAAGCGGAATATATTTTGGTTGCTAGTTTGTGCTCAAATTCTTTGGATGAAATAAAATATTTGTGATTTTGGAATAAAAATTGATGGTGTTCCTATGTTTTGTGATAACACTAGTGCTATTAATTTAACAAAAAAAAATTATTCATCATTTTAGAACTAAACAAACATATTGACATTAGACATTATTTTATTAGGGAGCGAGTGCAAAATGGACTATAATACAAATGGATATATTATTATTGATTTTGTAAAACTCTAATAATCAATTAGCTGATATTTTTACAAGGAGTAAGCTAGGTATTATTCGTTGATATATCTTGAATTTTATAATATTATTTATAATTTTTTAAGGCAAGTTCGTAGAGGGAGCTATTACGTCATTTTTAATTTATTATTTTTCAATTGTTTATTTTGATGATTTCAAAATTGGAGAAAATTGGAGAAAATTAAAAAAAAAAATGCTCTAAATTTGTTGTTTTATAATTTATGAATCATGTGATGGTTCATAATTTATTGAGGCTAATATATGGGGAGAATATGCTCTTGCATTACTCCGTTGTTGTGATAGTTCTATTTTTATTTATTTGGACATGTGTATTATTTTAGGTTTTTATGAATTTTTCTTGAAATGTTTATCTCATACAAAAAGGTAGGTAGATGGTTGGTTTATTGACTCTCAATATCAAATTAATTAATTGTTGGTTTGATGATAACAAACCTACTATTAATTATTAATAATTATCAGTGTTTTGAATTGTCCACAATATAAAGTTGTGAATAACGATTTCAATACTTTCTTTTAATCACTCAAATCAGAGTTAAATTGAAGAACTTAAAATAAGGTACTCGACGTGATGATGTGGCAGCTAAATTGACATTATGGACTAATAGAACTTTGGAAAGGTAACAAATGGCAGGGTTATTAATTATCTTTCAGAAATAGAAATGTATTTATACATCATAGGTCATTTGAATTATAAAAAATAAAATTAAAAAAATTGTTATTCATGTTATTTTTATTAATATTATTATATTTATAATAAGTTTTTAATTTTTTTATCATTTTTATATTATATTATTATAATTTTAAAAAAAATCAATTTAATTTATTTTTAATATTTACTTTTAAATCTGCCGTTTCCTTCTCTCTTATCTTATAGATTGAGATTCTCTCCTACAAACATTTTTATTGTAGTGTCAGGAAATGGTAAGGGATTAAATTGTATTCAATATTGTGATGTGTCCCAACAAAATTTAAGTTGGTATAGCTTTGATCTTTGAGTTTGCTCTTGAACTCTTGATATAGCGTTTGACCAAACAACTATAAAATTGTATTATTTTCTAAGTTTTTTTTTATAACTGTTTATCGTTTTGACTTCAACTACTATATTATATTAATTATCCTCTACTTATTTCTAAAAGGTTTCATAATTAAAAAAATTAATCACGCATAAATATTTTTATTGTTAAAACTCTATTCATCCCTTACTCGAATTCGTATGCCCATCCAACAACTCACTCTATATTTTTCTCAAACCCATCTTTATTGGATGGGCATGCGAATTCGAGAAAGGGATGAATAGAGTTTTTTATGGAATCCATGAGAGATTGTGATGCTTGTCCTCTTTTCCAGCTCAATTAGGTTCCGACACTGAAATTGTGAAACCGAATTAAATAGGTAAATGAGTAAATTCTTGAAGTTGGCTAAATTGGCTAAATGACGAATTCTTGAAATTGAGGTGTTAGTCTTCAAAAAAAAAAAAAATAATAATAATAATAAATAAATAAAATAATAATAATAATATTTTTTTTCTTTCATTCTTCAACCTTCGTCATCTGAGCTTTATGGTGCCGCAAATTCTGGGTATCGTGGCGCCATCGAGACCTTCCTTCGAAATTTGCTTCCATTGATAATCTGGGAAACTACCTTATATATCAACTGCAAGTATCTGGAGTGGTCAATCATGGTGGTTTCCATGGCAATCATTCCCTCCTGCAACAATTTTGGTCGACCTCCACATTGCTCTCGCACTCGCAGTCATAACGCTCGCAATCTCAAATTCTGCCGCCGTATCTGTTGCCATGTTCATCGGAATCGGGTCTCGTTTAATTTTGGCCCTAGTGTAGCAGATTCGCTTCGTTATCTTCAATACCGGAGACGGAATTTAGCTTCCGTCACTTGCTCGGCTTCTGATAAACCGGAAATCAGGTTTTTCTCTCTTTCTCTGTTATTATTGTAGCGTTTGGATGGAAATAGAACAACAGTTGCTGATGATTTTAATGTTGTTATGCTTTTTGTATCTCATTACTTGATTTTCGACCATAGCTTGATTTTCGTAGTTTTGCGTTATTTTGCGTTTGTTCATGAGACTGCTTTTGGATGGCGAAAATCGACGTAAATTTATGGAAACTCAGAGGATCTTGCCTGACTTCTTATGTGAATTTTCTCATTTGTGTATTTCAATTGAGTATTTAAGATGGTGAGTTCTTCATACTTCATGCCTTGAGCCACAAAGCTTGTCTGGTTTTCTCATATATGTTATCTGATCACAACTTGATTTGTATGCTCAAACCTATAGACAGCCAAGCTGTTTGATGTGATCAGCGTATAATGATTCCAAATTGAGCCAGAATGTCCTGTTTATGGACTAATTAAACTAAAAAAGTAACCCTTAGATTAACAACTGCATTGGAATGCTTAATTGGAAGAATAACTTATCCTAGTCTCCCTTCTAATTACTAACATTGGTGTTGACACTCTCGTTTGATAATCATTTAGTCTTTTGTTTTTGTTTTTTTTGAAAGTTGTGTTTGCTTTCTCACCCTACAATGATCCTCATCTTCCTTAAGGTAACATTTGAATTTTTAGCCTAATTCTAAAATGAAAATAACTTCTAAAATCTACTCTTTTTTAGTTAAAACTTGGTATGGATTTTAAAAATATTGTTAGAAAGTATTTGCCTGGATTGACTCCCCATAACATGGGAGAGCGCTTGTGAGACTTGGCGCTCGACTTTGTCCGAGAGAAAATTTACGAACTCCTAATGGGTTTGTTGAATCTTGATTTTAATATGCCTATCGAGCAAGATTATCTATTCCCCACTGGGTTTCTATGTTTTTGACAGCCCATCTTTGTCTCAGTAGAGTCTTTCAGTGACATGTTTCGGTCCTCTTTCCCATTACTTAGAAAAAATGAGCTACCGGTTCAGGTATAAGATACTATCATTACTGCTTGGACAATTAGATATTCAACCAGTAATCGCAACGACCCAATTGCAATTCAAATCCTTGATTTTCGAATTGAGAGATAGCAAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTGAGAAACAAAACAAAGAAAGTCATAGGTATAAATAGTGTTTATAAGCTTAATTTTCAAAAATAAAAAATCGAATGGTTATCAAATCAGACCTACGGTTTTTCTTTTTTGGGGGCGGAGGGTTGAGAGTTGAGTACGGAGCCTGGTTGTGTTCTAACCCAGTGTCTTTTTTTTCAGTACACCTGTTATTCAATCTGAAATGAGGCTTTGTGTAACAGTATCTGTTTTTTTTCTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAACTGCTTGCTGCATTGGCAAATTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAATGGACTTGGAATAGACTTCGGAGCCGTAGCCTTTTTCGCATTTCTTTACTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCAAGGCTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTACCATCAGCACTCTGCGTGGGATCGCTCGTCTTGTAATTTGTGCTGGCCCCGAATCCTTTATCATGGAAGCTTTTAAAACAAGTGAACCTTTCACCGAACGACTTCTAGAACGAGGGGTATTAGTCATACCCTTTGCCACAGATGCTAGTTCACTGAATTTTGAGTTCGATGAACGTGAAGAGATGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCGGTATACATGTCCCAGTGGTCGGCGTAAGTAACTATAATTAACATATATTTTCACATTGCTCCCCTCCTCCTTCCTCCATGTGATTTGCCTTTTCTTGTGAACAATAGGTGGTTAGATGATCAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCGCCTGTGTAAGTTATCCTCGTCGTTGAACTTCCATTTCAAATTGATTGATGAACTACAATGGTTGCCTCTTTAATTCTTAAACTGCCAGTCTAAGCTGTGCTGTGGTAGTAAATAAATACTGCTTTGGTCCCATTTTTGCTCTTATACTTTCGATATATGTTCATTTTGATTCTTGTACTTTCAAAATGTCCATTATGATTATTGTAGTTTTAAAAAGTGACCATTTTGTTCCCTATTTGCAAAACTTAAACATAAGTTCTATACATGATAGAAATCCTTTAGTACAAGCTTATGGTTACATATTAAGAAATTGACTAAAAATGGATACAAAAATGGTTACTTTTGAAGTATAGGAACCAAAATGAACATTTTAAAAGTACATGAACCAAAAACTTTTCGGGTTTAATTTTGTAATGAAATATACTGTTTCGTTAACCATAATTCATGAGCTATCCAATTTGAAGTCCCCATAGTTGGATCTTATGTAAGCTGCACAGAGAAAAAACTTTTTTTTGCTGAATCCATGCCAAAGCTAGTTTACCTTGCAAAAGTTAATCAATTAATCTTTTTTTTTTTTTCTTCTTATCTTCCATAGCTTGCTGTGTTAATATTTGTTCTTGCAGGTATTTATCTCTTCGAATGGATGGCCGTGTTCGTGGTAGTGGGGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTGAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACTAGCTCTTCTTCCAAGTTAGTGCTCTTTTCACACGCTTCCTGTTAGTTATTAGCAATTATTTTCACTTCATTTCATCTAAAATCAACTCACAATCACTTCAATAAGTAGGGAAAAAAATAGTGGAAAACAAGAAGATGAAAAGTATTCGTATTAATGAAAAATCACCACGATCCATCTGATTATAACATTTCTCTCTATTATTATGTTAATCCGTGCATTTAAACGAGTCTTATACACACACATGTGAAGATTATGCACTAATAGCTGTGAAACGAAATCTTAATGAATGATTTCACTTGATTCACTTACGAAAGTTTAGGGCTTTTGTTACACAATTATTAATTTGGAGTCTTAAGTAATACAACCTCCAAAGTCTTGAGGTATAAATTGATTTTTTTCCCTATTTATTTGAAACTATAATCATGCCTTTTGTATTACCTTTTGAGATGGCATCAAATTTCCCATATCTAATTGAAGTCCTATTAGTTGAACTACAGAATCTCTTATCACATATACATACATATATACATATATAAATATACATACATATATACATATATATATATACATATGTATGTATATAGATAAATATTGGTATCATTATTGGCCTAATTTATAAGGTGACAACATTATTGGCTTAATTTCTCAGATTCTATATATACTCTCAAAACAGTTGATTCTATATATACATCTATATATATACATATGTATGTATATATTTATCTATATACATACATATGTATATATATATTTATCTATATACATACATATGTATATATACATATATGTATGTATGTATATATATATTTATCTATATACATATGTATGTATATAGATAAATATATACATATTACATACATATGTATGTATATAGATAAATATATACATATTACATACATATGTATGTATATAGATAAATATATACATATTACATACATATGCATACATATAGATATATATATATGGAATCAACTGTTTTGAGAAATTAGGCCAATAATGTTGTCACTTTAGAAATTTTGGCCCTTTTTTGTATAATTCAACTGTTACAAAATTTCTTGCTCCAAATGGGAAAATTGTATTAGTTTGTTCTTGTTTTCAACTTTATGCTTAAACAGATATTTACGATGGAGTGGAGTAGGCGTTTTGTAATAATCTTTAAGCCATCCAGGATGTTGCCCTTGTGAAATCATCTCCAACACCATTGTCATGCTCGACTGCCTGAGAAATGGAACCGAATCTCATGACAGCCGAAATACAGGTCAGAGATTTACTTCTTACTTTTTGGGTGTTCTAACAATATAGGTCGATAATATATATCTAAACCAGTTGAGCTATACTCAATTTGGCAAAGGTTTAACGTTCTTCGACATCGTAACTTTTATATTGGATCTCGAATCCAATATTCTTTGTTATTAGTATTTGCTCCGGCTATTACATTGTGTGGATGCAAATCTGTTAATAGTTAGTTGAATATGTATTTAGATACACCCAGTATATGGTAATAAAGCGATTGTACACTTTCATTCAATGTAAATAGCTATGTTTTCTTAGGAGTAATTTGGCATTAGATTGATTCATTTATGAGAGTTTCATTCCGTGTGTCTATTTAGTCTCTGACGTTTTTAAAAGTGTCTAATAATTTGTTTA

mRNA sequence

CGCGTAATTTGCGCGCGAAAGTTCATCGTTCTTTAAAACTGAAATCGCTCTGACGAGAAGTTTGATGATTTTAGGGCTCGAAGTTAATGGCGGCTCACGATGCTGTAAGATGACGCAGAATTTCGAGGATGATTTCGTGTAAGCAGTGGTTTATGCTGATGCGTGAACCGAGTATCTTCTGAACAAAATTTATCGGTACGATTGTAAAAACTCCCGTGAGCACGTCCACTAAGCTTCACAAAGATGAAAAAGCTCAATTAGGTTCCGACACTGAAATTGTGAAACCGAATTAAATAGGTAAATGAGTAAATTCTTGAAGTTGGCTAAATTGGCTAAATGACGAATTCTTGAAATTGAGGTGTTAGTCTTCAAAAAAAAAAAAAATAATAATAATAATAAATAAATAAAATAATAATAATAATATTTTTTTTCTTTCATTCTTCAACCTTCGTCATCTGAGCTTTATGGTGCCGCAAATTCTGGGTATCGTGGCGCCATCGAGACCTTCCTTCGAAATTTGCTTCCATTGATAATCTGGGAAACTACCTTATATATCAACTGCAAGTATCTGGAGTGGTCAATCATGGTGGTTTCCATGGCAATCATTCCCTCCTGCAACAATTTTGGTCGACCTCCACATTGCTCTCGCACTCGCAGTCATAACGCTCGCAATCTCAAATTCTGCCGCCGTATCTGTTGCCATGTTCATCGGAATCGGGTCTCGTTTAATTTTGGCCCTAGTGTAGCAGATTCGCTTCGTTATCTTCAATACCGGAGACGGAATTTAGCTTCCGTCACTTGCTCGGCTTCTGATAAACCGGAAATCAGTACACCTGTTATTCAATCTGAAATGAGGCTTTGTGTAACAGTATCTGTTTTTTTTCTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAACTGCTTGCTGCATTGGCAAATTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAATGGACTTGGAATAGACTTCGGAGCCGTAGCCTTTTTCGCATTTCTTTACTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCAAGGCTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTACCATCAGCACTCTGCGTGGGATCGCTCGTCTTGTAATTTGTGCTGGCCCCGAATCCTTTATCATGGAAGCTTTTAAAACAAGTGAACCTTTCACCGAACGACTTCTAGAACGAGGGGTATTAGTCATACCCTTTGCCACAGATGCTAGTTCACTGAATTTTGAGTTCGATGAACGTGAAGAGATGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCGGTATACATGTCCCAGTGGTCGGCGTGGTTAGATGATCAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCGCCTGTGTATTTATCTCTTCGAATGGATGGCCGTGTTCGTGGTAGTGGGGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTGAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACTAGCTCTTCTTCCAAATATTTACGATGGAGTGGAGTAGGCGTTTTGTAATAATCTTTAAGCCATCCAGGATGTTGCCCTTGTGAAATCATCTCCAACACCATTGTCATGCTCGACTGCCTGAGAAATGGAACCGAATCTCATGACAGCCGAAATACAGGTCAGAGATTTACTTCTTACTTTTTGGGTGTTCTAACAATATAGGTCGATAATATATATCTAAACCAGTTGAGCTATACTCAATTTGGCAAAGGTTTAACGTTCTTCGACATCGTAACTTTTATATTGGATCTCGAATCCAATATTCTTTGTTATTAGTATTTGCTCCGGCTATTACATTGTGTGGATGCAAATCTGTTAATAGTTAGTTGAATATGTATTTAGATACACCCAGTATATGGTAATAAAGCGATTGTACACTTTCATTCAATGTAAATAGCTATGTTTTCTTAGGAGTAATTTGGCATTAGATTGATTCATTTATGAGAGTTTCATTCCGTGTGTCTATTTAGTCTCTGACGTTTTTAAAAGTGTCTAATAATTTGTTTA

Coding sequence (CDS)

ATGGTGGTTTCCATGGCAATCATTCCCTCCTGCAACAATTTTGGTCGACCTCCACATTGCTCTCGCACTCGCAGTCATAACGCTCGCAATCTCAAATTCTGCCGCCGTATCTGTTGCCATGTTCATCGGAATCGGGTCTCGTTTAATTTTGGCCCTAGTGTAGCAGATTCGCTTCGTTATCTTCAATACCGGAGACGGAATTTAGCTTCCGTCACTTGCTCGGCTTCTGATAAACCGGAAATCAGTACACCTGTTATTCAATCTGAAATGAGGCTTTGTGTAACAGTATCTGTTTTTTTTCTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAACTGCTTGCTGCATTGGCAAATTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAATGGACTTGGAATAGACTTCGGAGCCGTAGCCTTTTTCGCATTTCTTTACTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCAAGGCTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTACCATCAGCACTCTGCGTGGGATCGCTCGTCTTGTAATTTGTGCTGGCCCCGAATCCTTTATCATGGAAGCTTTTAAAACAAGTGAACCTTTCACCGAACGACTTCTAGAACGAGGGGTATTAGTCATACCCTTTGCCACAGATGCTAGTTCACTGAATTTTGAGTTCGATGAACGTGAAGAGATGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCGGTATACATGTCCCAGTGGTCGGCGTGGTTAGATGATCAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCGCCTGTGTATTTATCTCTTCGAATGGATGGCCGTGTTCGTGGTAGTGGGGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTGAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

Protein sequence

MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQYRRRNLASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Homology
[Close]
BLAST of Cp4.1LG15g01170 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-31
Identity = 101/345 (29.28%), Postives = 152/345 (44.06%), Query Frame = 1 

Query: 33  FCRRICCHVHRNRVSFNFGPSVADSLRYLQYRRRNLASVT-------CSASDKPEISTPV 92
           +  + CCH +R       G    D LR +  R  NL   T        S    PE     
Sbjct: 115 YYNKACCHAYRGE-----GKKAVDCLR-IALRDYNLKFATILNDPDLASFRALPEFKE-- 174

Query: 93  IQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAAL 152
           +Q E RL             K+ SEV +PFR VR FFY  F A+  +       +L+ A+
Sbjct: 175 LQEEARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAI 234

Query: 153 ANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN 212
                A  + +      I+ G +     L+  EN  +  Q+ +++R+E+LS L LR+  N
Sbjct: 235 RGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTN 294

Query: 213 KVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPF------------ 272
           +V+ +  LR   R VI AG +  +  A + ++ F   LL RGVL++P             
Sbjct: 295 RVVELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEK 354

Query: 273 ---------ATDASSLNFEFDEREEMKDITTKRKR--LWRLTPVYMSQWSAWLDDQKKLA 332
                    AT   S+  +FD R +     +K K    ++   V   +W  W+ DQ+   
Sbjct: 355 KGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISE 414

Query: 333 GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL 348
           GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Sbjct: 415 GVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKL 451

[Close]
BLAST of Cp4.1LG15g01170 vs. TrEMBL
Match: A0A0A0L902_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 6.2e-150
Identity = 278/349 (79.66%), Postives = 297/349 (85.10%), Query Frame = 1 

Query: 8   IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQYRRRN 67
           I S NN   PPH S T SHNA + KF RR  C VHR  VSF+  P +  SLR+L Y RRN
Sbjct: 10  ISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSLRFLVYGRRN 69

Query: 68  LASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFI 127
           LA+  CSA+DKPEIS                    STAKIRSEVLSPFRSVRMFFYLTFI
Sbjct: 70  LANFICSAADKPEIS--------------------STAKIRSEVLSPFRSVRMFFYLTFI 129

Query: 128 ASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLA 187
           ASGTLGGLIATTQLL ALANSSRA+EVPDIL GLG+DFGAVA FAFLYFRENNAKNAQLA
Sbjct: 130 ASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLA 189

Query: 188 RLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERG 247
           RLSREESLSNLKLRVDQNKVI IS LRGIARLVICAGPESFI+EAFK+SEPFTERLLERG
Sbjct: 190 RLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERG 249

Query: 248 VLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSD 307
           VLV+P ATD ++LNFEFD+REE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGV+SD
Sbjct: 250 VLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSD 309

Query: 308 SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 310 SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Cp4.1LG15g01170 vs. TrEMBL
Match: A0A061DQ88_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 1.1e-117
Identity = 216/288 (75.00%), Postives = 247/288 (85.76%), Query Frame = 1 

Query: 69  ASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA 128
           +SV CSA++KP  S+ +                SS AKIRSEVLSPFRSVRMFFYL FIA
Sbjct: 73  SSVVCSAANKPSSSSEI----------------SSAAKIRSEVLSPFRSVRMFFYLAFIA 132

Query: 129 SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLAR 188
           SG LGGLIA TQL+AAL N +R+ EVPD+L  LGID  AV+ FAFLYFREN AKNAQ+AR
Sbjct: 133 SGALGGLIAFTQLIAALTNPARSSEVPDLLTSLGIDVAAVSIFAFLYFRENTAKNAQIAR 192

Query: 189 LSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGV 248
           LSREESLSNLKLRVDQNK+I++S+LRGIARLVICAGP SFI+E+FK+SEPFTE LL+RGV
Sbjct: 193 LSREESLSNLKLRVDQNKIISVSSLRGIARLVICAGPASFILESFKSSEPFTEGLLQRGV 252

Query: 249 LVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDS 308
           LVIPFATD +SL+ +FD+ E+MK+ITTKRKRLW+LTPVY+S+WS WLD+QKKLAGVS +S
Sbjct: 253 LVIPFATDGNSLSLDFDDSEDMKEITTKRKRLWQLTPVYVSEWSEWLDEQKKLAGVSPES 312

Query: 309 PVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           PVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 313 PVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGLWSGLLDGMDGRVL 344

[Close]
BLAST of Cp4.1LG15g01170 vs. TrEMBL
Match: A0A0D2Q2X4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.8e-117
Identity = 214/288 (74.31%), Postives = 249/288 (86.46%), Query Frame = 1 

Query: 69  ASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA 128
           +S+ CSA++KP  S+ V                SS AKIRSEVLSPFRSVRMFFYLTFIA
Sbjct: 55  SSIVCSAANKPSSSSQV----------------SSAAKIRSEVLSPFRSVRMFFYLTFIA 114

Query: 129 SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLAR 188
           SG+LGGLIATTQL+++L N +R+ EVPDIL GLGID GAV+ FAFLYFREN AKNAQLAR
Sbjct: 115 SGSLGGLIATTQLISSLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFRENTAKNAQLAR 174

Query: 189 LSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGV 248
           LSREESLSNLKLRV+QNK+I++S+LRGIARLVIC+GP SFI+E+FK SEPFTE LLERGV
Sbjct: 175 LSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPFTESLLERGV 234

Query: 249 LVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDS 308
           LV+PFATD +S + +FDE E+MK+IT KRKRLW+L PVY+S+W+ WLD+QKKLAG+S +S
Sbjct: 235 LVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQKKLAGISPES 294

Query: 309 PVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           PVYLSLR+DGRVRGSGVG+PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 295 PVYLSLRLDGRVRGSGVGFPPWNALVAQLPPVKGLWSGLLDGMDGRVL 326

[Close]
BLAST of Cp4.1LG15g01170 vs. TrEMBL
Match: A0A0B0PHJ8_GOSAR (Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F383_04136 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 9.0e-117
Identity = 215/288 (74.65%), Postives = 251/288 (87.15%), Query Frame = 1 

Query: 70  SVTCSASDKPEISTPVIQSEMRLCV-TVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA 129
           ++ CSA++KP  S+ V + E  +    V  +FL   AKIRSEVLSPFRSVRMFFYL FIA
Sbjct: 56  TIVCSAANKPSSSSQVREGEEDMEQGNVEDYFLIR-AKIRSEVLSPFRSVRMFFYLAFIA 115

Query: 130 SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLAR 189
           SG+LGGLIATTQL+A+L N +R+ EVPDIL GLGID GAV+ FAFLYFREN AKNAQL R
Sbjct: 116 SGSLGGLIATTQLIASLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFRENTAKNAQLTR 175

Query: 190 LSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGV 249
           LSREESLSNLKLRV+QNK+I++S+LRGIARLVIC+GP SFI+E+FK SEPFTE LLERGV
Sbjct: 176 LSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPFTESLLERGV 235

Query: 250 LVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDS 309
           LV+PFATD +S + +FDE E+MK+IT KRKRLW+L PVY+S+W+ WLD+QKKLAG+S +S
Sbjct: 236 LVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQKKLAGISPES 295

Query: 310 PVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           PVYLSLR+DGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 296 PVYLSLRLDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 342

[Close]
BLAST of Cp4.1LG15g01170 vs. TrEMBL
Match: F6HZU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g04900 PE=4 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 1.7e-115
Identity = 214/289 (74.05%), Postives = 244/289 (84.43%), Query Frame = 1 

Query: 68  LASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFI 127
           L+ +TCSAS+KP  S+P                +SSTAKIRSEVLSPFR+VRMFFYL FI
Sbjct: 54  LSIITCSASNKPSSSSPSP--------------ISSTAKIRSEVLSPFRTVRMFFYLAFI 113

Query: 128 ASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLA 187
           ASG LGGLIATTQL+AAL NSSRA  VPDIL GLGID GAVA FAFLY RE++AKNAQLA
Sbjct: 114 ASGALGGLIATTQLIAALTNSSRAPLVPDILKGLGIDIGAVAIFAFLYSRESSAKNAQLA 173

Query: 188 RLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERG 247
           RL+REESLSNLKLRVD+ KVI+++ LRGIARLVICAGP  FI E+FK S+PFT+ LL+RG
Sbjct: 174 RLTREESLSNLKLRVDEKKVISVNDLRGIARLVICAGPAPFIAESFKLSQPFTQGLLDRG 233

Query: 248 VLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSD 307
           VLV+PF TD    +FE++E EEMKDITTKRKRLW+L PVY+S+WS WLD+QKKLAGVS +
Sbjct: 234 VLVVPFVTDGKLPSFEYEESEEMKDITTKRKRLWQLVPVYVSEWSKWLDEQKKLAGVSPE 293

Query: 308 SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           SPVYLSLRMDGRVRGSGVGYPPWNA VAQLPP+KG+W+GLLDGMDGRVL
Sbjct: 294 SPVYLSLRMDGRVRGSGVGYPPWNAFVAQLPPIKGMWTGLLDGMDGRVL 328

[Close]
BLAST of Cp4.1LG15g01170 vs. TAIR10
Match: AT4G28740.1 (AT4G28740.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 358.2 bits (918), Expect = 5.8e-99
Identity = 194/353 (54.96%), Postives = 248/353 (70.25%), Query Frame = 1 

Query: 5   MAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQYR 64
           MA + S   +    H S+   + A+     RRI  H HR R+ F+         R  Q  
Sbjct: 17  MATLVSSQTYIYHCHISKQALYQAKESYSHRRISRHNHRERLDFSHRNHRLTITRKQQPL 76

Query: 65  RRNLASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYL 124
             N     C A+D+P        SE           +S+ A+IRSEVLSPFRSVRMFFYL
Sbjct: 77  SFN---TVCFAADEP--------SE-----------ISADARIRSEVLSPFRSVRMFFYL 136

Query: 125 TFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNA 184
            FIASG+LGGLIAT++L+ ALAN +R+ EV +I+ GLG+D GA + FAFLYF EN  KNA
Sbjct: 137 AFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKNA 196

Query: 185 QLARLSREESLSNLKLRVDQ-NKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERL 244
           Q+ARLSREE+L  LK+RV++ NKVI++  LRG+ARLVICAGP  FI EAFK S+ +T+ L
Sbjct: 197 QMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQGL 256

Query: 245 LERGVLVIPFATDASSLNFEFDERE-EMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLA 304
           +ERGV+V+ +ATD +S   EFDE +   ++++ +RK+LWR+TPV++ +W  WL++QKKLA
Sbjct: 257 VERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNEQKKLA 316

Query: 305 GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 356
            VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Sbjct: 317 NVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

[Close]
BLAST of Cp4.1LG15g01170 vs. TAIR10
Match: AT1G02910.1 (AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-32
Identity = 101/345 (29.28%), Postives = 152/345 (44.06%), Query Frame = 1 

Query: 33  FCRRICCHVHRNRVSFNFGPSVADSLRYLQYRRRNLASVT-------CSASDKPEISTPV 92
           +  + CCH +R       G    D LR +  R  NL   T        S    PE     
Sbjct: 115 YYNKACCHAYRGE-----GKKAVDCLR-IALRDYNLKFATILNDPDLASFRALPEFKE-- 174

Query: 93  IQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAAL 152
           +Q E RL             K+ SEV +PFR VR FFY  F A+  +       +L+ A+
Sbjct: 175 LQEEARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAI 234

Query: 153 ANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN 212
                A  + +      I+ G +     L+  EN  +  Q+ +++R+E+LS L LR+  N
Sbjct: 235 RGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTN 294

Query: 213 KVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPF------------ 272
           +V+ +  LR   R VI AG +  +  A + ++ F   LL RGVL++P             
Sbjct: 295 RVVELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEK 354

Query: 273 ---------ATDASSLNFEFDEREEMKDITTKRKR--LWRLTPVYMSQWSAWLDDQKKLA 332
                    AT   S+  +FD R +     +K K    ++   V   +W  W+ DQ+   
Sbjct: 355 KGFGASSKAATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISE 414

Query: 333 GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL 348
           GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Sbjct: 415 GVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKL 451

[Close]
BLAST of Cp4.1LG15g01170 vs. NCBI nr
Match: gi|659093061|ref|XP_008447350.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo])

HSP 1 Score: 542.0 bits (1395), Expect = 8.0e-151
Identity = 279/354 (78.81%), Postives = 301/354 (85.03%), Query Frame = 1 

Query: 3   VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQ 62
           +S  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SLR+  
Sbjct: 5   LSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHV 64

Query: 63  YRRRNLASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFF 122
           Y RRNLA+   SA+DKPEIS                    STAKIRSEVLSPFRSVRMFF
Sbjct: 65  YGRRNLANYIYSAADKPEIS--------------------STAKIRSEVLSPFRSVRMFF 124

Query: 123 YLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAK 182
           YLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVA FAFLYFRENNAK
Sbjct: 125 YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAK 184

Query: 183 NAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTER 242
           NAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESF++EAFK+SEPFTE+
Sbjct: 185 NAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQ 244

Query: 243 LLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLA 302
           LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLA
Sbjct: 245 LLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLA 304

Query: 303 GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 305 GVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Cp4.1LG15g01170 vs. NCBI nr
Match: gi|449468602|ref|XP_004152010.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 538.5 bits (1386), Expect = 8.8e-150
Identity = 278/349 (79.66%), Postives = 297/349 (85.10%), Query Frame = 1 

Query: 8   IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRYLQYRRRN 67
           I S NN   PPH S T SHNA + KF RR  C VHR  VSF+  P +  SLR+L Y RRN
Sbjct: 10  ISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSLRFLVYGRRN 69

Query: 68  LASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFI 127
           LA+  CSA+DKPEIS                    STAKIRSEVLSPFRSVRMFFYLTFI
Sbjct: 70  LANFICSAADKPEIS--------------------STAKIRSEVLSPFRSVRMFFYLTFI 129

Query: 128 ASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLA 187
           ASGTLGGLIATTQLL ALANSSRA+EVPDIL GLG+DFGAVA FAFLYFRENNAKNAQLA
Sbjct: 130 ASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLA 189

Query: 188 RLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERG 247
           RLSREESLSNLKLRVDQNKVI IS LRGIARLVICAGPESFI+EAFK+SEPFTERLLERG
Sbjct: 190 RLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERG 249

Query: 248 VLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSD 307
           VLV+P ATD ++LNFEFD+REE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGV+SD
Sbjct: 250 VLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSD 309

Query: 308 SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 310 SPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]
BLAST of Cp4.1LG15g01170 vs. NCBI nr
Match: gi|590715027|ref|XP_007050079.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 431.4 bits (1108), Expect = 1.5e-117
Identity = 216/288 (75.00%), Postives = 247/288 (85.76%), Query Frame = 1 

Query: 69  ASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA 128
           +SV CSA++KP  S+ +                SS AKIRSEVLSPFRSVRMFFYL FIA
Sbjct: 73  SSVVCSAANKPSSSSEI----------------SSAAKIRSEVLSPFRSVRMFFYLAFIA 132

Query: 129 SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLAR 188
           SG LGGLIA TQL+AAL N +R+ EVPD+L  LGID  AV+ FAFLYFREN AKNAQ+AR
Sbjct: 133 SGALGGLIAFTQLIAALTNPARSSEVPDLLTSLGIDVAAVSIFAFLYFRENTAKNAQIAR 192

Query: 189 LSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGV 248
           LSREESLSNLKLRVDQNK+I++S+LRGIARLVICAGP SFI+E+FK+SEPFTE LL+RGV
Sbjct: 193 LSREESLSNLKLRVDQNKIISVSSLRGIARLVICAGPASFILESFKSSEPFTEGLLQRGV 252

Query: 249 LVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDS 308
           LVIPFATD +SL+ +FD+ E+MK+ITTKRKRLW+LTPVY+S+WS WLD+QKKLAGVS +S
Sbjct: 253 LVIPFATDGNSLSLDFDDSEDMKEITTKRKRLWQLTPVYVSEWSEWLDEQKKLAGVSPES 312

Query: 309 PVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           PVYLSLR+DGRVRGSGVGYPPWNA VAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 313 PVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGLWSGLLDGMDGRVL 344

[Close]
BLAST of Cp4.1LG15g01170 vs. NCBI nr
Match: gi|823127258|ref|XP_012434346.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii])

HSP 1 Score: 430.6 bits (1106), Expect = 2.6e-117
Identity = 214/288 (74.31%), Postives = 249/288 (86.46%), Query Frame = 1 

Query: 69  ASVTCSASDKPEISTPVIQSEMRLCVTVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA 128
           +S+ CSA++KP  S+ V                SS AKIRSEVLSPFRSVRMFFYLTFIA
Sbjct: 55  SSIVCSAANKPSSSSQV----------------SSAAKIRSEVLSPFRSVRMFFYLTFIA 114

Query: 129 SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLAR 188
           SG+LGGLIATTQL+++L N +R+ EVPDIL GLGID GAV+ FAFLYFREN AKNAQLAR
Sbjct: 115 SGSLGGLIATTQLISSLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFRENTAKNAQLAR 174

Query: 189 LSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGV 248
           LSREESLSNLKLRV+QNK+I++S+LRGIARLVIC+GP SFI+E+FK SEPFTE LLERGV
Sbjct: 175 LSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPFTESLLERGV 234

Query: 249 LVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDS 308
           LV+PFATD +S + +FDE E+MK+IT KRKRLW+L PVY+S+W+ WLD+QKKLAG+S +S
Sbjct: 235 LVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQKKLAGISPES 294

Query: 309 PVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           PVYLSLR+DGRVRGSGVG+PPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 295 PVYLSLRLDGRVRGSGVGFPPWNALVAQLPPVKGLWSGLLDGMDGRVL 326

[Close]
BLAST of Cp4.1LG15g01170 vs. NCBI nr
Match: gi|728845017|gb|KHG24460.1| (Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum])

HSP 1 Score: 428.3 bits (1100), Expect = 1.3e-116
Identity = 215/288 (74.65%), Postives = 251/288 (87.15%), Query Frame = 1 

Query: 70  SVTCSASDKPEISTPVIQSEMRLCV-TVSVFFLSSTAKIRSEVLSPFRSVRMFFYLTFIA 129
           ++ CSA++KP  S+ V + E  +    V  +FL   AKIRSEVLSPFRSVRMFFYL FIA
Sbjct: 56  TIVCSAANKPSSSSQVREGEEDMEQGNVEDYFLIR-AKIRSEVLSPFRSVRMFFYLAFIA 115

Query: 130 SGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLAR 189
           SG+LGGLIATTQL+A+L N +R+ EVPDIL GLGID GAV+ FAFLYFREN AKNAQL R
Sbjct: 116 SGSLGGLIATTQLIASLTNPARSSEVPDILTGLGIDIGAVSIFAFLYFRENTAKNAQLTR 175

Query: 190 LSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGV 249
           LSREESLSNLKLRV+QNK+I++S+LRGIARLVIC+GP SFI+E+FK SEPFTE LLERGV
Sbjct: 176 LSREESLSNLKLRVNQNKIISVSSLRGIARLVICSGPASFILESFKLSEPFTESLLERGV 235

Query: 250 LVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDS 309
           LV+PFATD +S + +FDE E+MK+IT KRKRLW+L PVY+S+W+ WLD+QKKLAG+S +S
Sbjct: 236 LVVPFATDGNSPSLDFDESEDMKEITEKRKRLWQLAPVYVSEWTEWLDEQKKLAGISPES 295

Query: 310 PVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 357
           PVYLSLR+DGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 296 PVYLSLRLDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 342

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g01170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LPA1_ARATH2.2e-3129.28Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 P... [more]
BLAST of Cp4.1LG15g01170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L902_CUCSA6.2e-15079.66Uncharacterized protein OS=Cucumis sativus GN=Csa_3G621430 PE=4 SV=1[more]
A0A061DQ88_THECC1.1e-11775.00Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_003773 PE=4 SV=1[more]
A0A0D2Q2X4_GOSRA1.8e-11774.31Uncharacterized protein OS=Gossypium raimondii GN=B456_001G235900 PE=4 SV=1[more]
A0A0B0PHJ8_GOSAR9.0e-11774.65Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Gossypium arboreum GN=F38... [more]
F6HZU3_VITVI1.7e-11574.05Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g04900 PE=4 SV=... [more]
BLAST of Cp4.1LG15g01170 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28740.15.8e-9954.96 FUNCTIONS IN: molecular_function unknown[more]
AT1G02910.11.2e-3229.28 tetratricopeptide repeat (TPR)-containing protein[more]
BLAST of Cp4.1LG15g01170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093061|ref|XP_008447350.1|8.0e-15178.81PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo][more]
gi|449468602|ref|XP_004152010.1|8.8e-15079.66PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus][more]
gi|590715027|ref|XP_007050079.1|1.5e-11775.00Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|823127258|ref|XP_012434346.1|2.6e-11774.31PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Gossypium raimondii][more]
gi|728845017|gb|KHG24460.1|1.3e-11674.65Glutamate--tRNA ligase, chloroplastic/mitochondrial [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021883LPA1-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g01170.1Cp4.1LG15g01170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021883Protein of unknown function DUF3493PFAMPF11998DUF3493coord: 103..179
score: 6.0
NoneNo IPR availablePANTHERPTHR35498FAMILY NOT NAMEDcoord: 101..356
score: 1.1E
NoneNo IPR availablePANTHERPTHR35498:SF1SUBFAMILY NOT NAMEDcoord: 101..356
score: 1.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g01170Cucsa.140460Cucumber (Gy14) v1cgycpeB0379
Cp4.1LG15g01170CmaCh19G001310Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g01170CmoCh19G001510Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g01170Cla002752Watermelon (97103) v1cpewmB258
Cp4.1LG15g01170Csa3G621430Cucumber (Chinese Long) v2cpecuB238
Cp4.1LG15g01170MELO3C012814Melon (DHL92) v3.5.1cpemeB231
Cp4.1LG15g01170ClCG07G001580Watermelon (Charleston Gray)cpewcgB240
Cp4.1LG15g01170CSPI03G27090Wild cucumber (PI 183967)cpecpiB242
Cp4.1LG15g01170Lsi05G010710Bottle gourd (USVL1VR-Ls)cpelsiB209
Cp4.1LG15g01170MELO3C012814.2Melon (DHL92) v3.6.1cpemedB270
Cp4.1LG15g01170CsaV3_3G028580Cucumber (Chinese Long) v3cpecucB0297
Cp4.1LG15g01170Bhi05G000097Wax gourdcpewgoB0327
Cp4.1LG15g01170CsGy3G025260Cucumber (Gy14) v2cgybcpeB331
Cp4.1LG15g01170Carg16916Silver-seed gourdcarcpeB1057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g01170Cucurbita pepo (Zucchini)cpecpeB155
Cp4.1LG15g01170Cucurbita pepo (Zucchini)cpecpeB258
Cp4.1LG15g01170Cucurbita pepo (Zucchini)cpecpeB265
Cp4.1LG15g01170Cucurbita pepo (Zucchini)cpecpeB273
Cp4.1LG15g01170Cucurbita pepo (Zucchini)cpecpeB284
Cp4.1LG15g01170Cucurbita maxima (Rimu)cmacpeB615
Cp4.1LG15g01170Cucurbita moschata (Rifu)cmocpeB564
Cp4.1LG15g01170Cucurbita moschata (Rifu)cmocpeB848
Cp4.1LG15g01170Cucumber (Gy14) v2cgybcpeB341
Cp4.1LG15g01170Melon (DHL92) v3.6.1cpemedB283
Cp4.1LG15g01170Silver-seed gourdcarcpeB0124
Cp4.1LG15g01170Silver-seed gourdcarcpeB0332
Cp4.1LG15g01170Silver-seed gourdcarcpeB1094
Cp4.1LG15g01170Silver-seed gourdcarcpeB1329
Cp4.1LG15g01170Cucumber (Chinese Long) v3cpecucB0308