MELO3C012366 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C012366
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cellulose synthase
Location	chr10 : 984857 .. 985702 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTAAATAAAAAATAAAAAAATCGCCCGGCGCTACAACACACTCCTCGTCTCTTCCTGGCCTGTTTCCATCGGCTGAAAACCATGTATGCTGCGAACCGCTGTAGATTTCGGGAACGTTTCGGACAAAATTGAACCAAAAATCAATACAACAATGTTAGGGTTTCTCACAATCCCACACCAATTGAAGATTTCCCCATCTCTCGCATCTCTCCCTTCAATCTCGTCACCTTCTTCCCTCTTCCTTCCACTCTACAAATTCCCTCTCCATCACACATTTTTCAACTCCAAATTTCTAATTTCCAGTAACCGCAGAAGATTCACAGCGTCTGCGAGCAACAAGAACACCGAATTCGGCGGAAGTATAAAGGAAAGAGAAGGAGAAAGAAATGGGGCAAAGAGCTCCTCTAATGGCGGCGATGACTTGAAGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTGATCGACCCAGATCCTGATAACATCTTGGCCGTTGCGTTGACTGGTTTGCTTGCTTGGGCAAGTGTGCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTATTCTTTTATTGCCGCGCTTCTTATTTTCATTCTAATTACTTTACTTTAGAAGTGCAACAACATTCTGTATAGTCCCTTCACTTTTATGCTTGATTAATTGGATTTCCATCGAAATTCCATGGCTTCGGTGTATAAATGTGTTTGTCTAGCCTTAAAAGAAGGCTAAACTACAAATACAGTAGGTTTATGTTATGTCCAGAATTTGGTACCCCTTAGTCGAGAGCATATGCATTAACTCGTTGAACT

mRNA sequence

GTTGTAAATAAAAAATAAAAAAATCGCCCGGCGCTACAACACACTCCTCGTCTCTTCCTGGCCTGTTTCCATCGGCTGAAAACCATGTATGCTGCGAACCGCTGTAGATTTCGGGAACGTTTCGGACAAAATTGAACCAAAAATCAATACAACAATGTTAGGGTTTCTCACAATCCCACACCAATTGAAGATTTCCCCATCTCTCGCATCTCTCCCTTCAATCTCGTCACCTTCTTCCCTCTTCCTTCCACTCTACAAATTCCCTCTCCATCACACATTTTTCAACTCCAAATTTCTAATTTCCAGTAACCGCAGAAGATTCACAGCGTCTGCGAGCAACAAGAACACCGAATTCGGCGGAAGTATAAAGGAAAGAGAAGGAGAAAGAAATGGGGCAAAGAGCTCCTCTAATGGCGGCGATGACTTGAAGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTGATCGACCCAGATCCTGATAACATCTTGGCCGTTGCGTTGACTGGTTTGCTTGCTTGGGCAAGTGTGCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTATTCTTTTATTGCCGCGCTTCTTATTTTCATTCTAATTACTTTACTTTAGAAGTGCAACAACATTCTGTATAGTCCCTTCACTTTTATGCTTGATTAATTGGATTTCCATCGAAATTCCATGGCTTCGGTGTATAAATGTGTTTGTCTAGCCTTAAAAGAAGGCTAAACTACAAATACAGTAGGTTTATGTTATGTCCAGAATTTGGTACCCCTTAGTCGAGAGCATATGCATTAACTCGTTGAACT

Coding sequence (CDS)

ATGCTGCGAACCGCTGTAGATTTCGGGAACGTTTCGGACAAAATTGAACCAAAAATCAATACAACAATGTTAGGGTTTCTCACAATCCCACACCAATTGAAGATTTCCCCATCTCTCGCATCTCTCCCTTCAATCTCGTCACCTTCTTCCCTCTTCCTTCCACTCTACAAATTCCCTCTCCATCACACATTTTTCAACTCCAAATTTCTAATTTCCAGTAACCGCAGAAGATTCACAGCGTCTGCGAGCAACAAGAACACCGAATTCGGCGGAAGTATAAAGGAAAGAGAAGGAGAAAGAAATGGGGCAAAGAGCTCCTCTAATGGCGGCGATGACTTGAAGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTTTTGATCGACCCAGATCCTGATAACATCTTGGCCGTTGCGTTGACTGGTTTGCTTGCTTGGGCAAGTGTGCAGGTTTTGTGGCAGCTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTATTCTTTTATTGCCGCGCTTCTTATTTTCATTCTAATTACTTTACTTTAG

Protein sequence

MLRTAVDFGNVSDKIEPKINTTMLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL*

Homology

[Close]

BLAST of MELO3C012366 vs. TrEMBL
Match: A0A0A0KRG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615300 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.1e-76
Identity = 149/164 (90.85%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASA 82
           MLGFLTIPHQLK+SPS AS   ISSPSSLF PLYKFP+HHTF+NS+FLISS+ RRFTA A
Sbjct: 1   MLGFLTIPHQLKVSPSFAS---ISSPSSLFRPLYKFPIHHTFYNSQFLISSDHRRFTAFA 60

Query: 83  SNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 142
           SNKNTEFGGSIKEREGERNGA  SSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  SNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 143 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL 161

[Close]

BLAST of MELO3C012366 vs. TrEMBL
Match: A0A067L981_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01521 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-33
Identity = 92/167 (55.09%), Postives = 110/167 (65.87%), Query Frame = 1


Query: 23  MLGFLTI-PHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTAS 82
           MLGF  + P  L   PS+ASLP+ +     FLP   F +  T   S+FL       F A 
Sbjct: 1   MLGFKFLSPPPL---PSIASLPTPNLAFISFLPRTHFKIPKT--QSRFL-------FFAQ 60

Query: 83  ASNKNTEFGGSIKEREG--ERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILA 142
            +N + E     KE+      NG   S+ GGDD KK+R P+ NIKW ELL+DPDPDNI+A
Sbjct: 61  TNNNSPEPKLQEKEKLNGFTDNGGGGSNGGGDDPKKDRSPLLNIKWVELLLDPDPDNIIA 120

Query: 143 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
           V LTGLL WASVQVLWQLF +S++ILVAALKYSFIAALL+FILITLL
Sbjct: 121 VGLTGLLTWASVQVLWQLFIVSVSILVAALKYSFIAALLLFILITLL 155

[Close]

BLAST of MELO3C012366 vs. TrEMBL
Match: B9HW05_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24130g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-29
Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1


Query: 37  PSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKER 96
           PS +  P +    +L  P   FPL         +      R   + +N N +     KE 
Sbjct: 13  PSFSRTPLLHPQPTL--PPASFPLK--------ISKKTHPRLVFARTNNNNDPAQEPKEP 72

Query: 97  EGER-NGAKSSSNGGDDLKKERGP-VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVL 156
           E E+ NG+ ++S GG DLK+++ P +F+IKW +LL++PDPDNILAV LTGLL+WASVQVL
Sbjct: 73  EQEKKNGSSNNSGGGYDLKQDQPPPLFDIKWGDLLLNPDPDNILAVGLTGLLSWASVQVL 132

Query: 157 WQLFFISLAILVAALKYSFIAALLIFILITLL 187
           WQLF I+LAILVAA+KYSFIAALLIFILITLL
Sbjct: 133 WQLFVIALAILVAAVKYSFIAALLIFILITLL 154

[Close]

BLAST of MELO3C012366 vs. TrEMBL
Match: A0A067E5D0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042532mg PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.3e-29
Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 1


Query: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFP--LHHTFFNSKFLISSNRRRFTA 82
           MLGF  + +    SP L +L  I    + F   ++F    H+ F     L + N +  ++
Sbjct: 1   MLGFKYVAN----SPILLNLLPIYHQRNKFPSDFRFKSKTHYKFSPRFILFAQNSKNDSS 60

Query: 83  SASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV 142
           S+S+ N     + K++E +       +N GDD++K+R   FN+KW ++L +PDPDNI AV
Sbjct: 61  SSSSNNNNDNSNGKDQENQNQKGSFVNNNGDDIEKDRPSGFNLKWGDIL-NPDPDNIFAV 120

Query: 143 ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
            LTGLL WASVQVLWQL  ISLAILVAALKYSFIAALLI ILITLL
Sbjct: 121 GLTGLLTWASVQVLWQLLTISLAILVAALKYSFIAALLILILITLL 161

[Close]

BLAST of MELO3C012366 vs. TrEMBL
Match: D7UBV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0074g00420 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 79/170 (46.47%), Postives = 105/170 (61.76%), Query Frame = 1


Query: 23  MLGFLT------IPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRR 82
           MLGF T      IP  ++  P    + S  + ++   P +  P        K ++ + + 
Sbjct: 50  MLGFTTALFHPPIPFSIRSDPPTTPILSFKATANSIYPYFHVP-------RKLVVKAEK- 109

Query: 83  RFTASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDN 142
                         G+ KE E E+   +S + GG+DLKK++GP+ N+KW +LL DP+P+N
Sbjct: 110 --------------GNGKEGEEEK---RSKNGGGEDLKKDKGPILNVKWRDLL-DPNPEN 169

Query: 143 ILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
           ILA+ L+G+L WASVQVLWQLFFISL ILVAALKYSFIAALLIFILITLL
Sbjct: 170 ILAIGLSGVLTWASVQVLWQLFFISLTILVAALKYSFIAALLIFILITLL 193

[Close]

BLAST of MELO3C012366 vs. TAIR10
Match: AT4G40045.1 (AT4G40045.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-23
Identity = 67/131 (51.15%), Postives = 78/131 (59.54%), Query Frame = 1


Query: 56  YKFPLHHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKK 115
           Y  P HH       L  S       +A N N     S KE  G  N   ++ +G    KK
Sbjct: 19  YNIPHHHHHIR---LCKSPSLILRTNAQNGND----SAKESSGGGNRPVTNDDGNGS-KK 78

Query: 116 ERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIA 175
           ++   F+ KW ELL +PD DN +AV L G+L WAS+QVL QLFFIS AILVAALKYSFIA
Sbjct: 79  DQFAGFSFKWGELL-NPDQDNFVAVGLAGVLTWASLQVLSQLFFISFAILVAALKYSFIA 138

Query: 176 ALLIFILITLL 187
           ALLIFIL+TLL
Sbjct: 139 ALLIFILVTLL 140

[Close]

BLAST of MELO3C012366 vs. NCBI nr
Match: gi|659091876|ref|XP_008446780.1| (PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo])

HSP 1 Score: 364.8 bits (935), Expect = 9.2e-98
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1


Query: 1   MLRTAVDFGNVSDKIEPKINTTMLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPL 60
           MLRTAVDFGNVSDKIEPKINTTMLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPL
Sbjct: 1   MLRTAVDFGNVSDKIEPKINTTMLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPL 60

Query: 61  HHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPV 120
           HHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPV
Sbjct: 61  HHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPV 120

Query: 121 FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIF 180
           FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIF
Sbjct: 121 FNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIF 180

Query: 181 ILITLL 187
           ILITLL
Sbjct: 181 ILITLL 186

[Close]

BLAST of MELO3C012366 vs. NCBI nr
Match: gi|778706388|ref|XP_011655841.1| (PREDICTED: uncharacterized protein LOC105435592 [Cucumis sativus])

HSP 1 Score: 292.7 bits (748), Expect = 4.4e-76
Identity = 149/164 (90.85%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASA 82
           MLGFLTIPHQLK+SPS AS   ISSPSSLF PLYKFP+HHTF+NS+FLISS+ RRFTA A
Sbjct: 1   MLGFLTIPHQLKVSPSFAS---ISSPSSLFRPLYKFPIHHTFYNSQFLISSDHRRFTAFA 60

Query: 83  SNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 142
           SNKNTEFGGSIKEREGERNGA  SSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  SNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 143 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL 161

[Close]

BLAST of MELO3C012366 vs. NCBI nr
Match: gi|802547375|ref|XP_012089894.1| (PREDICTED: uncharacterized protein LOC105648190 [Jatropha curcas])

HSP 1 Score: 149.4 bits (376), Expect = 6.1e-33
Identity = 92/167 (55.09%), Postives = 110/167 (65.87%), Query Frame = 1


Query: 23  MLGFLTI-PHQLKISPSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTAS 82
           MLGF  + P  L   PS+ASLP+ +     FLP   F +  T   S+FL       F A 
Sbjct: 1   MLGFKFLSPPPL---PSIASLPTPNLAFISFLPRTHFKIPKT--QSRFL-------FFAQ 60

Query: 83  ASNKNTEFGGSIKEREG--ERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILA 142
            +N + E     KE+      NG   S+ GGDD KK+R P+ NIKW ELL+DPDPDNI+A
Sbjct: 61  TNNNSPEPKLQEKEKLNGFTDNGGGGSNGGGDDPKKDRSPLLNIKWVELLLDPDPDNIIA 120

Query: 143 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
           V LTGLL WASVQVLWQLF +S++ILVAALKYSFIAALL+FILITLL
Sbjct: 121 VGLTGLLTWASVQVLWQLFIVSVSILVAALKYSFIAALLLFILITLL 155

[Close]

BLAST of MELO3C012366 vs. NCBI nr
Match: gi|224110228|ref|XP_002315454.1| (hypothetical protein POPTR_0010s24130g [Populus trichocarpa])

HSP 1 Score: 136.3 bits (342), Expect = 5.3e-29
Identity = 80/152 (52.63%), Postives = 102/152 (67.11%), Query Frame = 1


Query: 37  PSLASLPSISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRFTASASNKNTEFGGSIKER 96
           PS +  P +    +L  P   FPL         +      R   + +N N +     KE 
Sbjct: 13  PSFSRTPLLHPQPTL--PPASFPLK--------ISKKTHPRLVFARTNNNNDPAQEPKEP 72

Query: 97  EGER-NGAKSSSNGGDDLKKERGP-VFNIKWAELLIDPDPDNILAVALTGLLAWASVQVL 156
           E E+ NG+ ++S GG DLK+++ P +F+IKW +LL++PDPDNILAV LTGLL+WASVQVL
Sbjct: 73  EQEKKNGSSNNSGGGYDLKQDQPPPLFDIKWGDLLLNPDPDNILAVGLTGLLSWASVQVL 132

Query: 157 WQLFFISLAILVAALKYSFIAALLIFILITLL 187
           WQLF I+LAILVAA+KYSFIAALLIFILITLL
Sbjct: 133 WQLFVIALAILVAAVKYSFIAALLIFILITLL 154

[Close]

BLAST of MELO3C012366 vs. NCBI nr
Match: gi|641826899|gb|KDO46106.1| (hypothetical protein CISIN_1g042532mg [Citrus sinensis])

HSP 1 Score: 135.6 bits (340), Expect = 9.1e-29
Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 1


Query: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLYKFP--LHHTFFNSKFLISSNRRRFTA 82
           MLGF  + +    SP L +L  I    + F   ++F    H+ F     L + N +  ++
Sbjct: 1   MLGFKYVAN----SPILLNLLPIYHQRNKFPSDFRFKSKTHYKFSPRFILFAQNSKNDSS 60

Query: 83  SASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV 142
           S+S+ N     + K++E +       +N GDD++K+R   FN+KW ++L +PDPDNI AV
Sbjct: 61  SSSSNNNNDNSNGKDQENQNQKGSFVNNNGDDIEKDRPSGFNLKWGDIL-NPDPDNIFAV 120

Query: 143 ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 187
            LTGLL WASVQVLWQL  ISLAILVAALKYSFIAALLI ILITLL
Sbjct: 121 GLTGLLTWASVQVLWQLLTISLAILVAALKYSFIAALLILILITLL 161

The following BLAST results are available for this feature:

BLAST of MELO3C012366 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRG8_CUCSA	3.1e-76	90.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615300 PE=4 SV=1	[more]
A0A067L981_JATCU	4.2e-33	55.09	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01521 PE=4 SV=1	[more]
B9HW05_POPTR	3.7e-29	52.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24130g PE=4 SV=1	[more]
A0A067E5D0_CITSI	6.3e-29	48.19	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042532mg PE=4 SV=1	[more]
D7UBV1_VITVI	1.1e-28	46.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0074g00420 PE=4 SV=...	[more]

BLAST of MELO3C012366 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G40045.1	6.0e-23	51.15	unknown protein	[more]

BLAST of MELO3C012366 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091876\|ref\|XP_008446780.1\|	9.2e-98	100.00	PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo]	[more]
gi\|778706388\|ref\|XP_011655841.1\|	4.4e-76	90.85	PREDICTED: uncharacterized protein LOC105435592 [Cucumis sativus]	[more]
gi\|802547375\|ref\|XP_012089894.1\|	6.1e-33	55.09	PREDICTED: uncharacterized protein LOC105648190 [Jatropha curcas]	[more]
gi\|224110228\|ref\|XP_002315454.1\|	5.3e-29	52.63	hypothetical protein POPTR_0010s24130g [Populus trichocarpa]	[more]
gi\|641826899\|gb\|KDO46106.1\|	9.1e-29	48.19	hypothetical protein CISIN_1g042532mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU49790	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012366T1	MELO3C012366T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU49790	MU49790	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36789	FAMILY NOT NAMED	coord: 111..186 score: 4.1
None	No IPR available	PANTHER	PTHR36789:SF1	SUBFAMILY NOT NAMED	coord: 111..186 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C012366	Csa5G615300	Cucumber (Chinese Long) v2	cumeB377
MELO3C012366	Cla020508	Watermelon (97103) v1	mewmB061
MELO3C012366	ClCG05G021580	Watermelon (Charleston Gray)	mewcgB062
MELO3C012366	Cla97C05G103290	Watermelon (97103) v2	mewmbB060
MELO3C012366	Bhi07G000656	Wax gourd	mewgoB081
MELO3C012366	CSPI05G26510	Wild cucumber (PI 183967)	cpimeB369
MELO3C012366	Cucsa.308960	Cucumber (Gy14) v1	cgymeB508
MELO3C012366	CmaCh04G014170	Cucurbita maxima (Rimu)	cmameB640
MELO3C012366	CmoCh04G014900	Cucurbita moschata (Rifu)	cmomeB631
MELO3C012366	Lsi04G001310	Bottle gourd (USVL1VR-Ls)	lsimeB281
MELO3C012366	Cp4.1LG01g14320	Cucurbita pepo (Zucchini)	cpemeB363
MELO3C012366	Carg01917	Silver-seed gourd	carmeB0834
MELO3C012366	CsaV3_5G035650	Cucumber (Chinese Long) v3	cucmeB381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C012366	Silver-seed gourd	carmeB0684
MELO3C012366	Wax gourd	mewgoB062
MELO3C012366	Cucumber (Gy14) v1	cgymeB628
MELO3C012366	Cucurbita maxima (Rimu)	cmameB351
MELO3C012366	Cucurbita moschata (Rifu)	cmomeB344
MELO3C012366	Cucurbita moschata (Rifu)	cmomeB652
MELO3C012366	Watermelon (Charleston Gray)	mewcgB072
MELO3C012366	Watermelon (97103) v1	mewmB047
MELO3C012366	Watermelon (97103) v1	mewmB070
MELO3C012366	Cucurbita pepo (Zucchini)	cpemeB024
MELO3C012366	Bottle gourd (USVL1VR-Ls)	lsimeB463
MELO3C012366	Cucumber (Gy14) v2	cgybmeB319
MELO3C012366	Cucumber (Gy14) v2	cgybmeB363