Carg01917 (gene) Silver-seed gourd

NameCarg01917
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_003 : 1117976 .. 1118470 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATGTTAGGGTTTCTTACTATCCCATACCAATGGAAGATTTCCCCATCTCTCCCTTCATCTTCATCACCTTTTTCCCTCTCAACGAGATCTTCCCTCTCCTTTTCACTCTTCAAATTCCCTCTCCATTACTTGGAATCTCAAATTCCTGGTAAACGCAAAAGATTCACGGCGTTGGCGAGTAATAACGACAATGGATTGGGCGGAAATATCAAGGAGAGAGAAGGAGAAAGAAATGGAGCGAAGGGCTCCAATGGCGACGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTCTTAATCGATCCGGATCCTGATAACATCTTGGCCGTGGCGTTGACTGGCTTGCTTGCTTGGGCAAGTGTTCAGGTTTTGTGGCAGTTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTATTTTCATTCTAATTACATTACTATAG

mRNA sequence

ATGACAATGTTAGGGTTTCTTACTATCCCATACCAATGGAAGATTTCCCCATCTCTCCCTTCATCTTCATCACCTTTTTCCCTCTCAACGAGATCTTCCCTCTCCTTTTCACTCTTCAAATTCCCTCTCCATTACTTGGAATCTCAAATTCCTGGTAAACGCAAAAGATTCACGGCGTTGGCGAGTAATAACGACAATGGATTGGGCGGAAATATCAAGGAGAGAGAAGGAGAAAGAAATGGAGCGAAGGGCTCCAATGGCGACGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTCTTAATCGATCCGGATCCTGATAACATCTTGGCCGTGGCGTTGACTGGCTTGCTTGCTTGGGCAAGTGTTCAGGTTTTGTGGCAGTTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTATTTTCATTCTAATTACATTACTATAG

Coding sequence (CDS)

ATGACAATGTTAGGGTTTCTTACTATCCCATACCAATGGAAGATTTCCCCATCTCTCCCTTCATCTTCATCACCTTTTTCCCTCTCAACGAGATCTTCCCTCTCCTTTTCACTCTTCAAATTCCCTCTCCATTACTTGGAATCTCAAATTCCTGGTAAACGCAAAAGATTCACGGCGTTGGCGAGTAATAACGACAATGGATTGGGCGGAAATATCAAGGAGAGAGAAGGAGAAAGAAATGGAGCGAAGGGCTCCAATGGCGACGATGACTTGAGGAAAGAACGAGGGCCGGTTTTCAATATCAAATGGGCTGAACTCTTAATCGATCCGGATCCTGATAACATCTTGGCCGTGGCGTTGACTGGCTTGCTTGCTTGGGCAAGTGTTCAGGTTTTGTGGCAGTTATTCTTCATCTCTTTGGCTATTTTAGTGGCTGCTCTTAAGTACTCTTTTATTGCTGCGCTTCTTATTTTCATTCTAATTACATTACTATAG

Protein sequence

MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYLESQIPGKRKRFTALASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
BLAST of Carg01917 vs. NCBI nr
Match: XP_022957096.1 (uncharacterized protein LOC111458579 [Cucurbita moschata])

HSP 1 Score: 298.9 bits (764), Expect = 1.1e-77
Identity = 162/164 (98.78%), Postives = 162/164 (98.78%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYLESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHY ESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYSESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGS GDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Carg01917 vs. NCBI nr
Match: XP_023549272.1 (uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 4.4e-76
Identity = 160/164 (97.56%), Postives = 160/164 (97.56%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYLESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSL SSSSPFSLSTRSSLSF LFKFPLHY ESQIPGKRKRFTAL
Sbjct: 1   MTMLGFLTIPYQWKISPSLSSSSSPFSLSTRSSLSFPLFKFPLHYSESQIPGKRKRFTAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGSNG DDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Carg01917 vs. NCBI nr
Match: XP_022993576.1 (uncharacterized protein LOC111489528 [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 2.1e-73
Identity = 156/164 (95.12%), Postives = 156/164 (95.12%), Query Frame = 0

Query: 1   MTMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYLESQIPGKRKRFTAL 60
           MTMLGFLTIPYQWKISPSL SSSSPF LSTRS LSF LFKFPLHY ESQI GKRKRF AL
Sbjct: 1   MTMLGFLTIPYQWKISPSLSSSSSPFPLSTRSFLSFPLFKFPLHYSESQISGKRKRFAAL 60

Query: 61  ASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ASNNDNGLGGNIKEREGERNGAKGS GDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL
Sbjct: 61  ASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNILAVAL 120

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

BLAST of Carg01917 vs. NCBI nr
Match: XP_022139143.1 (uncharacterized protein LOC111010120 [Momordica charantia])

HSP 1 Score: 213.8 bits (543), Expect = 4.5e-52
Identity = 127/168 (75.60%), Postives = 134/168 (79.76%), Query Frame = 0

Query: 3   MLGFLTIPYQWKISP--SLPSSSSPFSLSTRSSLSFSLFKFPLHY----LESQIPGKRKR 62
           MLGF T+P QW  +    L S+ +P S S  S  +   FKF LHY      SQIP  R R
Sbjct: 1   MLGFRTLPCQWSSASVRLLSSTPTPSSSSKISLRTVPRFKFTLHYALLMTRSQIPRNRAR 60

Query: 63  FTALASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122
           FTA + N DNGLGGNIKEREGER GAKGSNG DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 61  FTAFSGNGDNGLGGNIKEREGERTGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120

Query: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 168

BLAST of Carg01917 vs. NCBI nr
Match: XP_008446780.1 (PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 129/168 (76.79%), Postives = 139/168 (82.74%), Query Frame = 0

Query: 2   TMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYL----ESQIPGKRKRF 61
           TMLGFLTIP+Q KISPSL S     S+S+ SSL   L+KFPLH+     +  I   R+RF
Sbjct: 22  TMLGFLTIPHQLKISPSLASLP---SISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRF 81

Query: 62  TALASNNDNGLGGNIKEREGERNGAK-GSNGDDDLRKERGPVFNIKWAELLIDPDPDNIL 121
           TA ASN +   GG+IKEREGERNGAK  SNG DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 82  TASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 141

Query: 122 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 142 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 186

BLAST of Carg01917 vs. TAIR10
Match: AT4G40045.1 (unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 9.7e-17
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 0

Query: 92  RKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSF 151
           +K++   F+ KW ELL +PD DN +AV L G+L WAS+QVL QLFFIS AILVAALKYSF
Sbjct: 69  KKDQFAGFSFKWGELL-NPDQDNFVAVGLAGVLTWASLQVLSQLFFISFAILVAALKYSF 128

Query: 152 IAALLIFILITLL 165
           IAALLIFIL+TLL
Sbjct: 129 IAALLIFILVTLL 140

BLAST of Carg01917 vs. TrEMBL
Match: tr|A0A1S3BFX0|A0A1S3BFX0_CUCME (uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.6e-52
Identity = 129/168 (76.79%), Postives = 139/168 (82.74%), Query Frame = 0

Query: 2   TMLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLHYL----ESQIPGKRKRF 61
           TMLGFLTIP+Q KISPSL S     S+S+ SSL   L+KFPLH+     +  I   R+RF
Sbjct: 22  TMLGFLTIPHQLKISPSLASLP---SISSPSSLFLPLYKFPLHHTFFNSKFLISSNRRRF 81

Query: 62  TALASNNDNGLGGNIKEREGERNGAK-GSNGDDDLRKERGPVFNIKWAELLIDPDPDNIL 121
           TA ASN +   GG+IKEREGERNGAK  SNG DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 82  TASASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 141

Query: 122 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 142 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 186

BLAST of Carg01917 vs. TrEMBL
Match: tr|A0A0A0KRG8|A0A0A0KRG8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615300 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.8e-50
Identity = 126/167 (75.45%), Postives = 136/167 (81.44%), Query Frame = 0

Query: 3   MLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFSLFKFPLH--YLESQ--IPGKRKRFT 62
           MLGFLTIP+Q K+SPS  S SSP      SSL   L+KFP+H  +  SQ  I    +RFT
Sbjct: 1   MLGFLTIPHQLKVSPSFASISSP------SSLFRPLYKFPIHHTFYNSQFLISSDHRRFT 60

Query: 63  ALASNNDNGLGGNIKEREGERNGAKG-SNGDDDLRKERGPVFNIKWAELLIDPDPDNILA 122
           A ASN +   GG+IKEREGERNGA G SNG DDL+KERGPVFNIKWAELLIDPDPDNILA
Sbjct: 61  AFASNKNTEFGGSIKEREGERNGANGSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILA 120

Query: 123 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALL+FILITLL
Sbjct: 121 VALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLLFILITLL 161

BLAST of Carg01917 vs. TrEMBL
Match: tr|A0A2C9VY13|A0A2C9VY13_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G202400 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.8e-26
Identity = 86/137 (62.77%), Postives = 101/137 (73.72%), Query Frame = 0

Query: 33  SLSFSLFKFPLHYLES--QIPGKRKRFTALASNNDNGLGGNIKEREGER-NGA--KGSNG 92
           S+S   F FP   L++  +IP  + RF   A NN+N   G  KE++ E+ NG+   G+NG
Sbjct: 15  SVSRPKFTFPFFPLQTDIKIPKFQSRFLIFALNNNN--SGEPKEQKQEKLNGSTDNGTNG 74

Query: 93  DDDLRKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAAL 152
            DDL+K R P+ NIKW ELL+D DPDNILAVALTGLL WAS QVLWQLF +S AILVAAL
Sbjct: 75  -DDLKKNRPPLLNIKWGELLLDSDPDNILAVALTGLLTWASAQVLWQLFLVSAAILVAAL 134

Query: 153 KYSFIAALLIFILITLL 165
           KYSFIAALLIFILITLL
Sbjct: 135 KYSFIAALLIFILITLL 148

BLAST of Carg01917 vs. TrEMBL
Match: tr|A0A1Q3B8T8|A0A1Q3B8T8_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07898 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.8e-24
Identity = 91/174 (52.30%), Postives = 108/174 (62.07%), Query Frame = 0

Query: 3   MLGFLTIPYQWKISPSLPSSSSPFSLSTRSSLSFS--LFKFPLHYLESQIPGKRKRFTAL 62
           MLG  ++ Y     P   S   P S+   ++L+    L K  L  L  + P   KR   L
Sbjct: 1   MLGLKSLTY-----PPTSSLMKPISIPLHNNLTVPTYLLKLKLQPLIPKTP-STKRILVL 60

Query: 63  ASNNDNGLGGNIK---------EREGE-RNGAKGSNGDDDLRKERGPVFNIKWAELLIDP 122
           A NN+N   GN           E +G+ +NG  G  GD+D++K+  P+FN K  +LL DP
Sbjct: 61  AQNNENDNHGNNSNLTKQPNKTENQGQPKNGFNGVRGDEDMKKDGRPIFNFKLGDLL-DP 120

Query: 123 DPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           DPDNILAV LTGLLAWA VQVL QLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 DPDNILAVGLTGLLAWAGVQVLSQLFFISLAILVAALKYSFIAALLIFILITLL 167

BLAST of Carg01917 vs. TrEMBL
Match: tr|W9RHI9|W9RHI9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010155 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.8e-23
Identity = 87/149 (58.39%), Postives = 102/149 (68.46%), Query Frame = 0

Query: 25  PFSLSTR---SSLSFSLFKFPLHYLESQIPGKRKRFTALAS--NNDNGLGGNIKER--EG 84
           P SL++R     L  +   FP  +L+S  P +  R   LAS  NN+N L  +  ER   G
Sbjct: 84  PVSLTSRPLSRPLKETHLYFPYGFLKSYAPRRPTRVLTLASNDNNNNELRKDPNERGENG 143

Query: 85  ERNGAKGSNGDDDLRKERG-PVFN-IKWAELLIDPDPDNILAVALTGLLAWASVQVLWQL 144
           E+    G+NG D L KE G  +FN I+W ELL +PDPDNILAV LTGLL WASVQVLWQL
Sbjct: 144 EKREGLGANGRDGLGKENGRSIFNSIRWGELL-NPDPDNILAVGLTGLLTWASVQVLWQL 203

Query: 145 FFISLAILVAALKYSFIAALLIFILITLL 165
            FISLAIL+AA+KYSFIAALLIFILITLL
Sbjct: 204 LFISLAILLAAIKYSFIAALLIFILITLL 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022957096.11.1e-7798.78uncharacterized protein LOC111458579 [Cucurbita moschata][more]
XP_023549272.14.4e-7697.56uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo][more]
XP_022993576.12.1e-7395.12uncharacterized protein LOC111489528 [Cucurbita maxima][more]
XP_022139143.14.5e-5275.60uncharacterized protein LOC111010120 [Momordica charantia][more]
XP_008446780.11.0e-5176.79PREDICTED: uncharacterized protein LOC103489407 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT4G40045.19.7e-1769.86unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BFX0|A0A1S3BFX0_CUCME6.6e-5276.79uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=... [more]
tr|A0A0A0KRG8|A0A0A0KRG8_CUCSA2.8e-5075.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615300 PE=4 SV=1[more]
tr|A0A2C9VY13|A0A2C9VY13_MANES2.8e-2662.77Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G202400 PE=4 SV=... [more]
tr|A0A1Q3B8T8|A0A1Q3B8T8_CEPFO5.8e-2452.30Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_07898 PE=4... [more]
tr|W9RHI9|W9RHI9_9ROSA3.8e-2358.39Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010155 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg01917-RACarg01917-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..91
NoneNo IPR availablePANTHERPTHR36789FAMILY NOT NAMEDcoord: 17..164