MELO3C011301 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C011301
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description1-deoxy-D-xylulose-5-phosphate synthase
Locationchr3 : 24810632 .. 24810820 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTAAACGATCAGGAGGCATCCAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATGGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATACTATTCACCGCCAACCTACTCGCTGA

mRNA sequence

ATGGGATTAAACGATCAGGAGGCATCCAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATGGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATACTATTCACCGCCAACCTACTCGCTGA

Coding sequence (CDS)

ATGGGATTAAACGATCAGGAGGCATCCAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATGGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATACTATTCACCGCCAACCTACTCGCTGA

Protein sequence

MGLNDQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQPTR*
Homology
[Close]
BLAST of MELO3C011301 vs. TrEMBL
Match: A0A0A0LSP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382690 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-22
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 5  DQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQPTR 63
          + EASRKTTGWVLSRKRNLPFSNTT+AIAGTLLLGIGYMVYVNKS+NNND IHRQP+R
Sbjct: 4  NDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPSR 61

[Close]
BLAST of MELO3C011301 vs. NCBI nr
Match: gi|700207877|gb|KGN62996.1| (hypothetical protein Csa_2G382690 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.1e-22
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 5  DQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQPTR 63
          + EASRKTTGWVLSRKRNLPFSNTT+AIAGTLLLGIGYMVYVNKS+NNND IHRQP+R
Sbjct: 4  NDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPSR 61

The following BLAST results are available for this feature:
BLAST of MELO3C011301 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSP0_CUCSA5.6e-2289.66Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382690 PE=4 SV=1[more]
BLAST of MELO3C011301 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207877|gb|KGN62996.1|8.1e-2289.66hypothetical protein Csa_2G382690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011301T1MELO3C011301T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C011301Csa2G382690Cucumber (Chinese Long) v2cumeB117
MELO3C011301ClCG08G013720Watermelon (Charleston Gray)mewcgB299
MELO3C011301Cla97C08G157160Watermelon (97103) v2mewmbB306
MELO3C011301Bhi04G000045Wax gourdmewgoB343
MELO3C011301CSPI02G23940Wild cucumber (PI 183967)cpimeB118
MELO3C011301CsaV3_2G032500Cucumber (Chinese Long) v3cucmeB124
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C011301Cucurbita maxima (Rimu)cmameB025
MELO3C011301Cucurbita maxima (Rimu)cmameB162
MELO3C011301Cucurbita maxima (Rimu)cmameB725
MELO3C011301Cucurbita moschata (Rifu)cmomeB014
MELO3C011301Cucurbita moschata (Rifu)cmomeB151
MELO3C011301Cucurbita moschata (Rifu)cmomeB716
MELO3C011301Wild cucumber (PI 183967)cpimeB281
MELO3C011301Cucumber (Chinese Long) v2cumeB291
MELO3C011301Watermelon (Charleston Gray)mewcgB288
MELO3C011301Watermelon (97103) v1mewmB307
MELO3C011301Watermelon (97103) v1mewmB318
MELO3C011301Cucurbita pepo (Zucchini)cpemeB089
MELO3C011301Cucurbita pepo (Zucchini)cpemeB718
MELO3C011301Cucurbita pepo (Zucchini)cpemeB761
MELO3C011301Bottle gourd (USVL1VR-Ls)lsimeB298
MELO3C011301Bottle gourd (USVL1VR-Ls)lsimeB474
MELO3C011301Cucumber (Gy14) v2cgybmeB102
MELO3C011301Cucumber (Gy14) v2cgybmeB243
MELO3C011301Silver-seed gourdcarmeB0143
MELO3C011301Silver-seed gourdcarmeB0629
MELO3C011301Silver-seed gourdcarmeB0955
MELO3C011301Cucumber (Chinese Long) v3cucmeB288
MELO3C011301Wax gourdmewgoB370
MELO3C011301Melon (DHL92) v3.5.1memeB129
MELO3C011301Cucumber (Gy14) v1cgymeB276
MELO3C011301Cucumber (Gy14) v1cgymeB453