MELO3C011301T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C011301T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description1-deoxy-D-xylulose-5-phosphate synthase
Locationchr3 : 24810632 .. 24810820 (-)
Sequence length189
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTAAACGATCAGGAGGCATCCAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATGGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATACTATTCACCGCCAACCTACTCGCTGA

mRNA sequence

ATGGGATTAAACGATCAGGAGGCATCCAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATGGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATACTATTCACCGCCAACCTACTCGCTGA

Coding sequence (CDS)

ATGGGATTAAACGATCAGGAGGCATCCAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATGGCTATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAGAAATAATAACGATACTATTCACCGCCAACCTACTCGCTGA

Protein sequence

MGLNDQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQPTR*
Homology
[Close]
BLAST of MELO3C011301T1 vs. TrEMBL
Match: A0A0A0LSP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382690 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-22
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 5  DQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQPTR 63
          + EASRKTTGWVLSRKRNLPFSNTT+AIAGTLLLGIGYMVYVNKS+NNND IHRQP+R
Sbjct: 4  NDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPSR 61

[Close]
BLAST of MELO3C011301T1 vs. NCBI nr
Match: gi|700207877|gb|KGN62996.1| (hypothetical protein Csa_2G382690 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 8.1e-22
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 

Query: 5  DQEASRKTTGWVLSRKRNLPFSNTTMAIAGTLLLGIGYMVYVNKSRNNNDTIHRQPTR 63
          + EASRKTTGWVLSRKRNLPFSNTT+AIAGTLLLGIGYMVYVNKS+NNND IHRQP+R
Sbjct: 4  NDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPSR 61

The following BLAST results are available for this feature:
BLAST of MELO3C011301T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSP0_CUCSA5.6e-2289.66Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382690 PE=4 SV=1[more]
BLAST of MELO3C011301T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207877|gb|KGN62996.1|8.1e-2289.66hypothetical protein Csa_2G382690 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C011301MELO3C011301gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C011301T1MELO3C011301T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C011301T1.cds1MELO3C011301T1.cds1CDS