CsaV3_2G032500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G032500
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 21467962 .. 21468503 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCAAATTGTTGAAAGAGCACAAGAGAGAGAGTGGAAAAAAAAAGAAGAATGGGAGTAAACGATGAGGCATCGAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATCGCAATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAAAAATAATAACGATAACATTCACCGCCAACCTAGTCGATGATATTTTCTTTTTTCTTTTTCTAGGGATATGTTTTTTCTTTTTCTAATTTCTGTCATGTGTTTGATCTTCCTCTTTACTGTTGTAAAGCATGTATGTATATATATATAGACATCTATATCCTCCTCTTTTATACAAATATTTAGGTGCTCCTTCTGCAGTTTAGGGTGCTTTGGATCAGGTTTCGGTCTTGTGCATGCTTGTATTTTCACCTTGTGATGAATTTGTCAATTTGTCCCTAAAAACAACTCCTGTGTTTACAACTGAGAACGATAGCACTATATACTCTATGCTCTATGTTACATCTTCA

mRNA sequence

ATGGGAGTAAACGATGAGGCATCGAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATCGCAATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAAAAATAATAACGATAACATTCACCGCCAACCTAGTCGATGA

Coding sequence (CDS)

ATGGGAGTAAACGATGAGGCATCGAGGAAGACGACGGGGTGGGTATTGAGCCGAAAGAGGAACCTTCCATTCAGCAACACCACCATCGCAATTGCTGGAACTCTCCTCCTCGGAATCGGCTACATGGTTTATGTCAACAAATCCAAAAATAATAACGATAACATTCACCGCCAACCTAGTCGATGA

Protein sequence

MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPSR
Homology
[Close]
BLAST of CsaV3_2G032500 vs. NCBI nr
Match: KGN62996.1 (hypothetical protein Csa_2G382690 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS 60
          MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS
Sbjct: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

[Close]
BLAST of CsaV3_2G032500 vs. TrEMBL
Match: tr|A0A0A0LSP0|A0A0A0LSP0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382690 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS 60
          MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS
Sbjct: 1  MGVNDEASRKTTGWVLSRKRNLPFSNTTIAIAGTLLLGIGYMVYVNKSKNNNDNIHRQPS 60

Query: 61 R 62
          R
Sbjct: 61 R 61

The following BLAST results are available for this feature:
BLAST of CsaV3_2G032500 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62996.12.1e-26100.00hypothetical protein Csa_2G382690 [Cucumis sativus][more]
BLAST of CsaV3_2G032500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G032500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G032500 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSP0|A0A0A0LSP0_CUCSA1.4e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382690 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G032500.1CsaV3_2G032500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G032500CSPI02G23940Wild cucumber (PI 183967)cpicucB081
CsaV3_2G032500MELO3C011301Melon (DHL92) v3.5.1cucmeB124
CsaV3_2G032500ClCG08G013720Watermelon (Charleston Gray)cucwcgB173
CsaV3_2G032500MELO3C011301.2Melon (DHL92) v3.6.1cucmedB118
CsaV3_2G032500Cla97C08G157160Watermelon (97103) v2cucwmbB160
CsaV3_2G032500Bhi04G000045Wax gourdcucwgoB163
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G032500Cucumber (Gy14) v2cgybcucB065
CsaV3_2G032500Cucumber (Gy14) v2cgybcucB168
CsaV3_2G032500Cucumber (Gy14) v1cgycucB247
CsaV3_2G032500Cucumber (Gy14) v1cgycucB414
CsaV3_2G032500Cucurbita maxima (Rimu)cmacucB0016
CsaV3_2G032500Cucurbita maxima (Rimu)cmacucB0192
CsaV3_2G032500Cucurbita maxima (Rimu)cmacucB0935
CsaV3_2G032500Cucurbita moschata (Rifu)cmocucB0006
CsaV3_2G032500Cucurbita moschata (Rifu)cmocucB0176
CsaV3_2G032500Cucurbita moschata (Rifu)cmocucB0925
CsaV3_2G032500Cucurbita pepo (Zucchini)cpecucB0116
CsaV3_2G032500Cucurbita pepo (Zucchini)cpecucB0958
CsaV3_2G032500Cucurbita pepo (Zucchini)cpecucB1004
CsaV3_2G032500Wild cucumber (PI 183967)cpicucB207
CsaV3_2G032500Bottle gourd (USVL1VR-Ls)cuclsiB152
CsaV3_2G032500Melon (DHL92) v3.5.1cucmeB151
CsaV3_2G032500Watermelon (Charleston Gray)cucwcgB151
CsaV3_2G032500Watermelon (97103) v1cucwmB121
CsaV3_2G032500Watermelon (97103) v1cucwmB139
CsaV3_2G032500Wax gourdcucwgoB205
CsaV3_2G032500Cucumber (Chinese Long) v3cuccucB082
CsaV3_2G032500Silver-seed gourdcarcucB0159
CsaV3_2G032500Silver-seed gourdcarcucB0665
CsaV3_2G032500Silver-seed gourdcarcucB1015