MELO3C010869.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C010869.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCalcium-binding EF-hand
Locationchr03 : 30311131 .. 30311751 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCACCAAGCAAATCATAAAAAAAAAAAAAAAAACATACGAACATTTTGCTCCAACACTAAATCGTATCATTTCTAAGAAAATGTCTCGTGCAGCAAGCAAGCTACAGCTCTCCAGGGAGGATATAAAGGAGATTTTTAGAGAGCACGACATCGATGGAGATGGTCGATTGAGCTTGAGCGAGATGGTGAAGGCCTTCGGGTTCTTTGGCAGTATTCTTCCTTTCTACAAAGCACACTATGGAATGGCTCATGCTGATGAGAATGGCGATGGTTACATCGAAGAGGAGGAGCTCGACAAGCTCGTTGACTATGCCGAGAAGTTTCAGCACAAGAGGAAGTGCTGAGGTTATATGTAATTTTCCTCAGTCTGCTGATCATAATGTCATGACACTTCCTATTTCCATGCACTACTTTAAATATTACTCTCAAGTTTAGAAGTTTTAATGTGTTGTATAAATAAATTAAAAAAAAAAAAAAAAAATGAAGAAGGGCTAGGCTACCTAGCTAGCTGAAAGTCCTGCTTTGCCTTAGCTATCAAATGGGATGTTGTCTCTGTGTTTCAAAAAATCAAATAAACAGAAAAATAAATTCATATGGATAGTTTGCCTTGTTATTGTCA

mRNA sequence

AACCACCAAGCAAATCATAAAAAAAAAAAAAAAAACATACGAACATTTTGCTCCAACACTAAATCGTATCATTTCTAAGAAAATGTCTCGTGCAGCAAGCAAGCTACAGCTCTCCAGGGAGGATATAAAGGAGATTTTTAGAGAGCACGACATCGATGGAGATGGTCGATTGAGCTTGAGCGAGATGGTGAAGGCCTTCGGGTTCTTTGGCAGTATTCTTCCTTTCTACAAAGCACACTATGGAATGGCTCATGCTGATGAGAATGGCGATGGTTACATCGAAGAGGAGGAGCTCGACAAGCTCGTTGACTATGCCGAGAAGTTTCAGCACAAGAGGAAGTGCTGAGGTTATATGTAATTTTCCTCAGTCTGCTGATCATAATGTCATGACACTTCCTATTTCCATGCACTACTTTAAATATTACTCTCAAGTTTAGAAGTTTTAATGTGTTGTATAAATAAATTAAAAAAAAAAAAAAAAAATGAAGAAGGGCTAGGCTACCTAGCTAGCTGAAAGTCCTGCTTTGCCTTAGCTATCAAATGGGATGTTGTCTCTGTGTTTCAAAAAATCAAATAAACAGAAAAATAAATTCATATGGATAGTTTGCCTTGTTATTGTCA

Coding sequence (CDS)

ATGTCTCGTGCAGCAAGCAAGCTACAGCTCTCCAGGGAGGATATAAAGGAGATTTTTAGAGAGCACGACATCGATGGAGATGGTCGATTGAGCTTGAGCGAGATGGTGAAGGCCTTCGGGTTCTTTGGCAGTATTCTTCCTTTCTACAAAGCACACTATGGAATGGCTCATGCTGATGAGAATGGCGATGGTTACATCGAAGAGGAGGAGCTCGACAAGCTCGTTGACTATGCCGAGAAGTTTCAGCACAAGAGGAAGTGCTGA

Protein sequence

MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGYIEEEELDKLVDYAEKFQHKRKC
Homology
[Close]
BLAST of MELO3C010869.2 vs. NCBI nr
Match: KGN62516.1 (hypothetical protein Csa_2G358870 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 8.7e-39
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
          MSRAA++LQLSREDIKEIFREHDIDGDGRLS++EMVKAFG FGSILPFYKAHYGMAHADE
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 NGDGYIEEEELDKLVDYAEKFQHKRKC 88
          NGDG+IEEEELDKLVDYA+KFQHKRKC
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKRKC 87

[Close]
BLAST of MELO3C010869.2 vs. NCBI nr
Match: XP_004152805.1 (PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-36
Identity = 75/83 (90.36%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 5   ASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDG 64
           +++LQLSREDIKEIFREHDIDGDGRLS++EMVKAFG FGSILPFYKAHYGMAHADENGDG
Sbjct: 86  STRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADENGDG 145

Query: 65  YIEEEELDKLVDYAEKFQHKRKC 88
           +IEEEELDKLVDYA+KFQHKRKC
Sbjct: 146 FIEEEELDKLVDYAQKFQHKRKC 168

[Close]
BLAST of MELO3C010869.2 vs. NCBI nr
Match: KGN62525.1 (hypothetical protein Csa_2G359940 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          SK   SRE++KEIFREHDIDGDG LS+SE++KA GF G  +PFYKAHYGMA+ DENGDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 IEEEELDKLVDYAEKFQHKRK 87
          I E+ELDKL+DYAE+FQ +R+
Sbjct: 67 ISEDELDKLIDYAERFQKRRR 87

[Close]
BLAST of MELO3C010869.2 vs. NCBI nr
Match: XP_022144156.1 (probable calcium-binding protein CML15 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 54/78 (69.23%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 3   RAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENG 62
           + A K++ SR  IKEIF EHDIDGDG LS+SE++KAF F GS++P YKAHYG+A AD++G
Sbjct: 66  KKAPKIKFSRSQIKEIFMEHDIDGDGCLSVSELIKAFSFLGSVIPLYKAHYGLAFADDDG 125

Query: 63  DGYIEEEELDKLVDYAEK 81
           DG I EEELDKLVDYAEK
Sbjct: 126 DGLISEEELDKLVDYAEK 143

[Close]
BLAST of MELO3C010869.2 vs. NCBI nr
Match: XP_022951880.1 (calmodulin-like [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 48/78 (61.54%), Postives = 64/78 (82.05%), Query Frame = 0 

Query: 8   LQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGYIE 67
           ++LSR +I++IF EHDIDGDG L++SE+ KAF F GS+LP YKAHYG+ +AD +GDG I 
Sbjct: 77  MRLSRSEIRDIFLEHDIDGDGYLNVSELTKAFSFIGSMLPLYKAHYGLNYADADGDGRIS 136

Query: 68  EEELDKLVDYAEKFQHKR 86
           EEEL+KLVDYAE+   ++
Sbjct: 137 EEELEKLVDYAERVSRRK 154

[Close]
BLAST of MELO3C010869.2 vs. TAIR10
Match: AT3G50770.1 (calmodulin-like 41)

HSP 1 Score: 40.8 bits (94), Expect = 5.0e-04
Identity = 19/62 (30.65%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 9   QLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGYIEE 68
           Q S+E+++++F   D DGDG++S  E+   FG  G  +    A   +   D + DG +  
Sbjct: 59  QASKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGF 118

Query: 69  EE 71
           E+
Sbjct: 119 ED 120

[Close]
BLAST of MELO3C010869.2 vs. TrEMBL
Match: tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.8e-39
Identity = 80/87 (91.95%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
          MSRAA++LQLSREDIKEIFREHDIDGDGRLS++EMVKAFG FGSILPFYKAHYGMAHADE
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 NGDGYIEEEELDKLVDYAEKFQHKRKC 88
          NGDG+IEEEELDKLVDYA+KFQHKRKC
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKRKC 87

[Close]
BLAST of MELO3C010869.2 vs. TrEMBL
Match: tr|A0A0A0LKX1|A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-26
Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          SK   SRE++KEIFREHDIDGDG LS+SE++KA GF G  +PFYKAHYGMA+ DENGDG 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 IEEEELDKLVDYAEKFQHKRK 87
          I E+ELDKL+DYAE+FQ +R+
Sbjct: 67 ISEDELDKLIDYAERFQKRRR 87

[Close]
BLAST of MELO3C010869.2 vs. TrEMBL
Match: tr|A0A0A0KIY4|A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 0 

Query: 5   ASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDG 64
           AS +Q SRE IKEIF+ HD D DG L+L E+ KAF F G+ILP YKA++GM +AD N DG
Sbjct: 96  ASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAFAFLGTILPLYKAYHGMVYADANKDG 155

Query: 65  YIEEEELDKLVDYAEKFQHKR 86
            I ++EL+KLVDYA KF +KR
Sbjct: 156 LISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of MELO3C010869.2 vs. TrEMBL
Match: tr|A0A0A0KMQ1|A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 1   MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
           + R +S + LSRE IKEIF+ HD + DG L+  E+ KAF F GS+ PFYKA YGM +AD 
Sbjct: 87  LDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFLGSMFPFYKACYGMVYADA 146

Query: 61  NGDGYIEEEELDKLVDYAEKFQHKR 86
           N DG I E ELDKL+DYA K   K+
Sbjct: 147 NEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of MELO3C010869.2 vs. TrEMBL
Match: tr|A0A0A0LKW4|A0A0A0LKW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-17
Identity = 42/78 (53.85%), Postives = 62/78 (79.49%), Query Frame = 0 

Query: 6  SKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADENGDGY 65
          S  +L +E++KE+FREHD +GDGRLS+ E+ +AFG FG+  P Y+A +G+  AD++GDG+
Sbjct: 11 SGYKLQKEEMKEMFREHDFNGDGRLSIKELSRAFGQFGAFFPLYRAAFGLFLADDDGDGF 70

Query: 66 IEEEELDKLVDYAEKFQH 84
          I E+ELDK+VDYA K ++
Sbjct: 71 ISEQELDKVVDYAIKCKY 88

The following BLAST results are available for this feature:
BLAST of MELO3C010869.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62516.18.7e-3991.95hypothetical protein Csa_2G358870 [Cucumis sativus][more]
XP_004152805.11.8e-3690.36PREDICTED: probable calcium-binding protein CML10 [Cucumis sativus][more]
KGN62525.12.9e-2670.37hypothetical protein Csa_2G359940 [Cucumis sativus][more]
XP_022144156.13.0e-2369.23probable calcium-binding protein CML15 [Momordica charantia][more]
XP_022951880.13.1e-2061.54calmodulin-like [Cucurbita moschata][more]
BLAST of MELO3C010869.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50770.15.0e-0430.65calmodulin-like 41[more]
BLAST of MELO3C010869.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C010869.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRC1|A0A0A0LRC1_CUCSA5.8e-3991.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1[more]
tr|A0A0A0LKX1|A0A0A0LKX1_CUCSA1.9e-2670.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1[more]
tr|A0A0A0KIY4|A0A0A0KIY4_CUCSA3.9e-1961.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G068170 PE=4 SV=1[more]
tr|A0A0A0KMQ1|A0A0A0KMQ1_CUCSA2.1e-1756.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067410 PE=4 SV=1[more]
tr|A0A0A0LKW4|A0A0A0LKW4_CUCSA8.1e-1753.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358860 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010869.2.1MELO3C010869.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 50..78
e-value: 42.0
score: 4.7
coord: 14..42
e-value: 0.01
score: 25.0
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 14..39
e-value: 6.3E-7
score: 28.4
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 58..75
e-value: 0.0043
score: 16.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 10..45
score: 14.29
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 55..81
score: 7.986
IPR002048EF-hand domainCDDcd00051EFhcoord: 14..75
e-value: 1.50091E-7
score: 42.9201
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..81
e-value: 3.1E-12
score: 48.8
NoneNo IPR availablePANTHERPTHR44455FAMILY NOT NAMEDcoord: 4..80
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 59..71
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 23..35
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 5..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010869.2Csa2G358860Cucumber (Chinese Long) v2cumedB114
MELO3C010869.2CSPI04G24010Wild cucumber (PI 183967)cpimedB276
MELO3C010869.2CSPI02G19170Wild cucumber (PI 183967)cpimedB114
MELO3C010869.2Cucsa.232870Cucumber (Gy14) v1cgymedB387
MELO3C010869.2CmaCh01G018470Cucurbita maxima (Rimu)cmamedB475
MELO3C010869.2CmaCh12G005390Cucurbita maxima (Rimu)cmamedB170
MELO3C010869.2CmoCh12G004850Cucurbita moschata (Rifu)cmomedB161
MELO3C010869.2Lsi08G014650Bottle gourd (USVL1VR-Ls)lsimedB489
MELO3C010869.2Cp4.1LG07g05260Cucurbita pepo (Zucchini)cpemedB890
MELO3C010869.2Cp4.1LG11g01530Cucurbita pepo (Zucchini)cpemedB115
MELO3C010869.2CsGy2G019090Cucumber (Gy14) v2cgybmedB101
MELO3C010869.2Bhi04G000312Wax gourdmedwgoB321
MELO3C010869.2CsaV3_2G027870Cucumber (Chinese Long) v3cucmedB118
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C010869.2MELO3C016745.2Melon (DHL92) v3.6.1medmedB124
The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010869.2Cucumber (Gy14) v2cgybmedB242
MELO3C010869.2Cucumber (Gy14) v2cgybmedB482
MELO3C010869.2Cucumber (Gy14) v1cgymedB378
MELO3C010869.2Cucurbita maxima (Rimu)cmamedB024
MELO3C010869.2Cucurbita maxima (Rimu)cmamedB135
MELO3C010869.2Cucurbita maxima (Rimu)cmamedB540
MELO3C010869.2Cucurbita maxima (Rimu)cmamedB821
MELO3C010869.2Cucurbita moschata (Rifu)cmomedB012
MELO3C010869.2Cucurbita moschata (Rifu)cmomedB123
MELO3C010869.2Cucurbita moschata (Rifu)cmomedB461
MELO3C010869.2Cucurbita moschata (Rifu)cmomedB526
MELO3C010869.2Cucurbita moschata (Rifu)cmomedB815
MELO3C010869.2Cucurbita pepo (Zucchini)cpemedB266
MELO3C010869.2Cucurbita pepo (Zucchini)cpemedB605
MELO3C010869.2Cucurbita pepo (Zucchini)cpemedB746
MELO3C010869.2Cucurbita pepo (Zucchini)cpemedB852
MELO3C010869.2Wild cucumber (PI 183967)cpimedB542
MELO3C010869.2Cucumber (Chinese Long) v2cumedB275
MELO3C010869.2Cucumber (Chinese Long) v2cumedB526
MELO3C010869.2Melon (DHL92) v3.6.1medmedB080
MELO3C010869.2Bottle gourd (USVL1VR-Ls)lsimedB271
MELO3C010869.2Bottle gourd (USVL1VR-Ls)lsimedB315
MELO3C010869.2Watermelon (Charleston Gray)medwcgB278
MELO3C010869.2Watermelon (Charleston Gray)medwcgB272
MELO3C010869.2Watermelon (Charleston Gray)medwcgB288
MELO3C010869.2Watermelon (97103) v1medwmB295
MELO3C010869.2Watermelon (97103) v1medwmB311
MELO3C010869.2Watermelon (97103) v1medwmB323
MELO3C010869.2Silver-seed gourdcarmedB0190
MELO3C010869.2Silver-seed gourdcarmedB0779
MELO3C010869.2Cucumber (Chinese Long) v3cucmedB280
MELO3C010869.2Watermelon (97103) v2medwmbB277
MELO3C010869.2Watermelon (97103) v2medwmbB289
MELO3C010869.2Wax gourdmedwgoB370