MELO3C010287 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C010287
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RING/U-box superfamily protein, putative
Location	chr2 : 15599172 .. 15601845 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATACAACAAATCAATTGTTCATCTCTTCTCTACTCATTTCCTTGAACCGTAAATCCGCATCAATTACAATTATATCAAATCCACGTTTCTTCTGTTTCTGCTCCAAAAAGGTCCCCCAAAAAGAAAAAAATAAAATAAAAATAAAAACCATTCTTTCAATCCATTTCAAAGCATCATCGCCTAAATTCAAGCTCCAAAGTATATTAATCGTTACTCTCTTCGCTTCATTAAAATCTTAATTACCATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATGCTCTTTTTTTCTCCGATCACATAATCATGCTCTGTTTCTATTTGATAAAATGCCTGAAAGAGATGATTCATTCGTATACGTACACGGTTTTTCTTATGTGGGATGTCTCTCGATACGATGAATCTTATTGTTTTGAGCTTTGAGAATTAATGGGGTATATGGGTTTTCTAAGTAATTGACATTTTTGGATTTCTCTTCAAGAATGAAAATTTTGGAGAGCTGGGAGAAATAAAGAATGAAGGTAGTTTTTCTTTGCCTTTTTAAGTAATATTGGAGTTGGTCGGGGCCTTTTTAAGGATGCATTCTGATTTAGAGATGTAGTTTGTTGACCAATCTAAGTCAATTGGCTACTTTAATATCTTTTGGTATTAGCTTTGGTTGGATGCATTTGGGTTGTCTTTCATTTGATTCTATCAAGATCGAGATGTGTTGTTCTAGATATCAAGGTGGGATTGAGTTAATTTTACGCTTTAGAACCGATGATTAAGTTAACTCTATTATGCTTTGATGGAATTCCAATTATCCTATGTTTTGAATGATGAAATGTAACATGATTTGTATGCATGTTGTAGGTATGGTTCCTTTTTCCAATCAAACGGATGTTCGGTCGGAAGAGGTCTGTACTCTTTTGTTTGCTTAAGTGAGTAGACAGAATATTTTAATGCTTTCCCTTAGTAGAGAGCATTCAAGTCAGATTTTTTTTTTTTCCTGCTAGTGGACCACATTCTATTAAACTTACACCGCATTGAATCAACAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACTATAGCCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCTACGTCCCGTGAAAATCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTCAAATTTGCTGCTCATTGCAACTCAGAGTTTCCAGACCGTATAGGTACCCTTTTTGAATGAGAGTACTTCTCACGATGGCATGCTAAGTACTTGTATGATCTTTAAATGTTATAAAGATATTTGAAAATTCATACCCTATATAGTATATATTATTATGTGGCTCTCTCTAATCAGACGAGAAGACCTGAAAACCTAAATAATGCTAGAAATAGGTATTATGTAAGTACACCACATCTCAAGTTAATTAAATTTCAACGTTTCTTTTAGTTAAATGATCAGACACCTTGCTTTCAAACATATTTCGACTGTGTTTGGATTGACTTGTGACTTATAAAAATGTGTGCTTTTAAGCATTTAGAAAGTCATGCCACATGGGCAATTCTCATTCTTTTTTATCTAAATATATTAGATATCAGTTGCCAGTGTTTCTCTCTGATTTATTTGTAGTTTTGGTGATTCTGGTTCTCGAATTCTGGATAAAAAACAGTCAATTGTTTGGCATGAAACACTTATTTTACAAAGGAAAACGTCCTAAATAAACATATCATAGGTATCAGACCTGAGCCAAATTAAATCCTAACGATCATCTACAAAATGATTAGTGAAGTATAAAACAATATATTAGCCTGTGATCCCACACCATTTGAAGCGCTCGCTCTAGTGGGGGAAGATAGTTGCTTCTTCTACATTGATAATGTTGTTCTTCTGTATTAACTAAATTTTTGCCTCAATTTTAGAGAGCATTGAGAGCACCTTTAGGGGGCCAGAACGGATAAGGTACAATTCCTTGGGGAAGGATGCTATTTCATCTCATTTAATGAGAATGGTATGTGGGATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCGGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACGAAACTGCCTCCTGAAGTCGACGATTCGAAAGGAGGAGAACAAGAATGAGTTGAGTTGTACATATGTTATCACATAGCACCAACATAGGAAATAGAGAACTTGGTTCTGACTTGAATGGGCATCTTGAAAAGTGGAGTTTTTGCATCCTCGACTGATTTTCCAAACTAATCAATCACTGTTTTTTCTGGGTGGCTGTGATTTAGAAACAGAAAATAGTAACTTTGAATCACAACCATTCAGAAAATAGGATAATGGGTCAAAAGGTAATGAGGATTTTCCCTCCTTAGATTTCTTTTTGTGTAGAACTAGATTAACATATGGAAATCTTTTGCTACCTTGTGGGAATATTGTTATCTTGCATAGCAGCAGAGGATTTTAGTTGAGACATCTTCATGGTATTTTGTACTTCTTATTACATCAATGTTTAAAATCGTATAGTTTAGAAA

mRNA sequence

AAATCATACAACAAATCAATTGTTCATCTCTTCTCTACTCATTTCCTTGAACCGTAAATCCGCATCAATTACAATTATATCAAATCCACGTTTCTTCTGTTTCTGCTCCAAAAAGGTCCCCCAAAAAGAAAAAAATAAAATAAAAATAAAAACCATTCTTTCAATCCATTTCAAAGCATCATCGCCTAAATTCAAGCTCCAAAGTATATTAATCGTTACTCTCTTCGCTTCATTAAAATCTTAATTACCATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATGGTTCCTTTTTCCAATCAAACGGATGTTCGGTCGGAAGAGGTCTGTACTCTTTTGTTTGCTTAAGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACTATAGCCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCTACGTCCCGTGAAAATCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTCAAATTTGCTGCTCATTGCAACTCAGAGTTTCCAGACCGTATAGAGAGCATTGAGAGCACCTTTAGGGGGCCAGAACGGATAAGGTACAATTCCTTGGGGAAGGATGCTATTTCATCTCATTTAATGAGAATGGTATGTGGGATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCGGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACGAAACTGCCTCCTGAAGTCGACGATTCGAAAGGAGGAGAACAAGAATGAGTTGAGTTGTACATATGTTATCACATAGCACCAACATAGGAAATAGAGAACTTGGTTCTGACTTGAATGGGCATCTTGAAAAGTGGAGTTTTTGCATCCTCGACTGATTTTCCAAACTAATCAATCACTGTTTTTTCTGGGTGGCTGTGATTTAGAAACAGAAAATAGTAACTTTGAATCACAACCATTCAGAAAATAGGATAATGGGTCAAAAGGTAATGAGGATTTTCCCTCCTTAGATTTCTTTTTGTGTAGAACTAGATTAACATATGGAAATCTTTTGCTACCTTGTGGGAATATTGTTATCTTGCATAGCAGCAGAGGATTTTAGTTGAGACATCTTCATGGTATTTTGTACTTCTTATTACATCAATGTTTAAAATCGTATAGTTTAGAAA

Coding sequence (CDS)

ATGAAACGTTCACGTCATCACTATAGCCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATGCATCTACGTCCCGTGAAAATCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTCAAATTTGCTGCTCATTGCAACTCAGAGTTTCCAGACCGTATAGAGAGCATTGAGAGCACCTTTAGGGGGCCAGAACGGATAAGGTACAATTCCTTGGGGAAGGATGCTATTTCATCTCATTTAATGAGAATGGTATGTGGGATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCGGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACGAAACTGCCTCCTGAAGTCGACGATTCGAAAGGAGGAGAACAAGAATGA

Protein sequence

MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE*

Homology

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BLAST of MELO3C010287 vs. TrEMBL
Match: A0A0A0LT71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G217850 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.2e-81
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           MKRSRHH+SHQYC RGSTSQANAS SRENRVRTVLEERPAFKFAAH NSEFPDRIESIES
Sbjct: 45  MKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIES 104

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
           TFR PERIRYNSLGKDA SSH+MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH
Sbjct: 105 TFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 164

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE 161
           VYHAECLENRSSVEDRSDPPCPLCTK PPEVDDSK GEQE
Sbjct: 165 VYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQE 204

[Close]

BLAST of MELO3C010287 vs. TrEMBL
Match: A9P889_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00570g PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.9e-40
Identity = 86/160 (53.75%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           +KRSRHHY HQY RR S S A+ASTSR  +     +ER  FK ++H  SE     E+ E 
Sbjct: 81  LKRSRHHYGHQYSRRNSGSHADASTSR-GKTALSCDERLTFKLSSHLGSEPGCHTENKEL 140

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  P+R+R+NSL  DA+SS  +++VCGICQKL+RRK  F+GN L++ E  V A+LVCGH
Sbjct: 141 EFSRPDRVRFNSLVMDAVSSDALKIVCGICQKLVRRKPYFIGNALTAGEFSVVAILVCGH 200

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE 161
           VYH+ECLE ++S+ED  DPPCPLC+ L  E D  +  EQE
Sbjct: 201 VYHSECLEQKTSLEDMRDPPCPLCSGLLSEEDAPR--EQE 237

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BLAST of MELO3C010287 vs. TrEMBL
Match: D7T4X1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00330 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           ++RSRHHY HQY RR S + A+ASTS   ++    +E+ +FK A H  S+F     S E 
Sbjct: 90  LRRSRHHYGHQYSRRNSANHADASTSH-GKITPSCDEKLSFKLANHSKSDFGQHTGSREK 149

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  PERIR +S   DA+S  ++RMVCGICQ+ +RRK   L N LSSSEL V AVLVCGH
Sbjct: 150 AFFRPERIRSSSSVVDAVSLDMVRMVCGICQRPLRRKPYCLENVLSSSELSVVAVLVCGH 209

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGE 159
           VYHA+CLE R+  EDR DPPCPLC  L  +VDDS G E
Sbjct: 210 VYHADCLEQRTCHEDRQDPPCPLCVGLLSKVDDSGGQE 246

[Close]

BLAST of MELO3C010287 vs. TrEMBL
Match: A5AFH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009874 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           ++RSRHHY HQY RR S + A+ASTS   ++    +E+ +FK A H  S+F     S E 
Sbjct: 77  LRRSRHHYGHQYSRRNSANHADASTSH-GKITPSCDEKLSFKLANHSKSDFGQHTGSREK 136

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  PERIR +S   DA+S  ++RMVCGICQ+ +RRK   L N LSSSEL V AVLVCGH
Sbjct: 137 AFFRPERIRSSSSVVDAVSLDMVRMVCGICQRPLRRKPYCLENVLSSSELSVVAVLVCGH 196

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGE 159
           VYHA+CLE R+  EDR DPPCPLC  L  +VDDS G E
Sbjct: 197 VYHADCLEQRTCHEDRQDPPCPLCVGLLSKVDDSGGQE 233

[Close]

BLAST of MELO3C010287 vs. TrEMBL
Match: U5G9E4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06190g PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.0e-36
Identity = 80/158 (50.63%), Postives = 105/158 (66.46%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           +KRSRH+Y HQY RR   S A+ASTS   +      ER  FK  +   S+     E+ E 
Sbjct: 81  LKRSRHYYGHQYSRRNLGSHADASTSH-GKTALSRNERLTFKLISQPGSKPGCHTENKEI 140

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  P+R+R++SL  +A+SS  ++MVCGICQKL+RRK  FLGN L++ E  V A+LVCGH
Sbjct: 141 EFSRPDRVRFSSLVMNAVSSDAVKMVCGICQKLVRRKNYFLGNALTTGEFSVVAILVCGH 200

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGE 159
           VYH+ECLE ++S+ED  DPPCPLC+ L  E D S+  E
Sbjct: 201 VYHSECLEQKTSIEDMRDPPCPLCSGLLSEADASREEE 237

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BLAST of MELO3C010287 vs. TAIR10
Match: AT1G75400.1 (AT1G75400.1 RING/U-box superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.4e-13
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1


Query: 84  RMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPL 143
           + VCG C KL+  +     +++++ ELP+AAVL CGHVYHAECLE  ++  ++ DP CP+
Sbjct: 278 QQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPI 334

Query: 144 CT 146
           CT
Sbjct: 338 CT 334

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BLAST of MELO3C010287 vs. TAIR10
Match: AT1G19680.1 (AT1G19680.1 RING/U-box superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-11
Identity = 30/83 (36.14%), Postives = 46/83 (55.42%), Query Frame = 1


Query: 64  GPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYH 123
           G  R+   S  + + S  + +  CG C KL+  +     + ++  +LP+ AVL CGHVYH
Sbjct: 250 GRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTER-----SPVARFDLPIPAVLACGHVYH 309

Query: 124 AECLENRSSVEDRSDPPCPLCTK 147
           A CLE  ++  ++ DP CP+CT+
Sbjct: 310 AACLETMTNETEKYDPTCPICTE 327

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BLAST of MELO3C010287 vs. TAIR10
Match: AT2G21500.2 (AT2G21500.2 RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1


Query: 87  CGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCT 146
           CG C + L  + L       +++EL VAA+L CGHVYH+ECLE  +   D+ DP CP+CT
Sbjct: 251 CGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of MELO3C010287 vs. TAIR10
Match: AT4G39140.1 (AT4G39140.1 RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 1


Query: 73  LGKDAISSHLMRM------VCGICQKLMRRKLCFLGNTL-SSSELPVAAVLVCGHVYHAE 132
           L +D I  H  RM       CG C + +  K  +    +  ++EL V+A+L CGHVYH E
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 133 CLENRSSVEDRSDPPCPLCT 146
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of MELO3C010287 vs. TAIR10
Match: AT1G14180.1 (AT1G14180.1 RING/U-box superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 23/61 (37.70%), Postives = 36/61 (59.02%), Query Frame = 1


Query: 87  CGICQKLMRRKLCFLGNTL-SSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCT 146
           CG+C + + +K  +   ++  + ++PV  VL C HV+H ECL+  +    R+DP CP+CT
Sbjct: 185 CGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICT 244

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BLAST of MELO3C010287 vs. NCBI nr
Match: gi|659086424|ref|XP_008443927.1| (PREDICTED: uncharacterized protein LOC103487402 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.0e-88
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES
Sbjct: 45  MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 104

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
           TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH
Sbjct: 105 TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 164

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE 161
           VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE
Sbjct: 165 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of MELO3C010287 vs. NCBI nr
Match: gi|449465583|ref|XP_004150507.1| (PREDICTED: uncharacterized protein LOC101222911 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 1.8e-81
Identity = 150/160 (93.75%), Postives = 153/160 (95.62%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           MKRSRHH+SHQYC RGSTSQANAS SRENRVRTVLEERPAFKFAAH NSEFPDRIESIES
Sbjct: 45  MKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIES 104

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
           TFR PERIRYNSLGKDA SSH+MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH
Sbjct: 105 TFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 164

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE 161
           VYHAECLENRSSVEDRSDPPCPLCTK PPEVDDSK GEQE
Sbjct: 165 VYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQE 204

[Close]

BLAST of MELO3C010287 vs. NCBI nr
Match: gi|566259735|ref|XP_006389423.1| (hypothetical protein POPTR_0025s00570g [Populus trichocarpa])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 86/160 (53.75%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           +KRSRHHY HQY RR S S A+ASTSR  +     +ER  FK ++H  SE     E+ E 
Sbjct: 81  LKRSRHHYGHQYSRRNSGSHADASTSR-GKTALSCDERLTFKLSSHLGSEPGCHTENKEL 140

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  P+R+R+NSL  DA+SS  +++VCGICQKL+RRK  F+GN L++ E  V A+LVCGH
Sbjct: 141 EFSRPDRVRFNSLVMDAVSSDALKIVCGICQKLVRRKPYFIGNALTAGEFSVVAILVCGH 200

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGEQE 161
           VYH+ECLE ++S+ED  DPPCPLC+ L  E D  +  EQE
Sbjct: 201 VYHSECLEQKTSLEDMRDPPCPLCSGLLSEEDAPR--EQE 237

[Close]

BLAST of MELO3C010287 vs. NCBI nr
Match: gi|147819271|emb|CAN71231.1| (hypothetical protein VITISV_009874 [Vitis vinifera])

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-39
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           ++RSRHHY HQY RR S + A+ASTS   ++    +E+ +FK A H  S+F     S E 
Sbjct: 77  LRRSRHHYGHQYSRRNSANHADASTSH-GKITPSCDEKLSFKLANHSKSDFGQHTGSREK 136

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  PERIR +S   DA+S  ++RMVCGICQ+ +RRK   L N LSSSEL V AVLVCGH
Sbjct: 137 AFFRPERIRSSSSVVDAVSLDMVRMVCGICQRPLRRKPYCLENVLSSSELSVVAVLVCGH 196

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGE 159
           VYHA+CLE R+  EDR DPPCPLC  L  +VDDS G E
Sbjct: 197 VYHADCLEQRTCHEDRQDPPCPLCVGLLSKVDDSGGQE 233

[Close]

BLAST of MELO3C010287 vs. NCBI nr
Match: gi|225446215|ref|XP_002264040.1| (PREDICTED: uncharacterized protein LOC100267845 isoform X2 [Vitis vinifera])

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-39
Identity = 88/158 (55.70%), Postives = 107/158 (67.72%), Query Frame = 1


Query: 1   MKRSRHHYSHQYCRRGSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIES 60
           ++RSRHHY HQY RR S + A+ASTS   ++    +E+ +FK A H  S+F     S E 
Sbjct: 90  LRRSRHHYGHQYSRRNSANHADASTSH-GKITPSCDEKLSFKLANHSKSDFGQHTGSREK 149

Query: 61  TFRGPERIRYNSLGKDAISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGH 120
            F  PERIR +S   DA+S  ++RMVCGICQ+ +RRK   L N LSSSEL V AVLVCGH
Sbjct: 150 AFFRPERIRSSSSVVDAVSLDMVRMVCGICQRPLRRKPYCLENVLSSSELSVVAVLVCGH 209

Query: 121 VYHAECLENRSSVEDRSDPPCPLCTKLPPEVDDSKGGE 159
           VYHA+CLE R+  EDR DPPCPLC  L  +VDDS G E
Sbjct: 210 VYHADCLEQRTCHEDRQDPPCPLCVGLLSKVDDSGGQE 246

The following BLAST results are available for this feature:

BLAST of MELO3C010287 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT71_CUCSA	1.2e-81	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G217850 PE=4 SV=1	[more]
A9P889_POPTR	8.9e-40	53.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00570g PE=2 SV=1	[more]
D7T4X1_VITVI	1.2e-39	55.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00330 PE=4 SV=...	[more]
A5AFH6_VITVI	1.2e-39	55.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009874 PE=4 SV=1	[more]
U5G9E4_POPTR	6.0e-36	50.63	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06190g PE=4 SV=1	[more]

BLAST of MELO3C010287 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75400.1	6.4e-13	48.39	RING/U-box superfamily protein	[more]
AT1G19680.1	4.6e-11	36.14	RING/U-box superfamily protein	[more]
AT2G21500.2	1.0e-10	46.67	RING/U-box superfamily protein	[more]
AT4G39140.1	1.0e-10	40.00	RING/U-box superfamily protein	[more]
AT1G14180.1	2.1e-08	37.70	RING/U-box superfamily protein	[more]

BLAST of MELO3C010287 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659086424\|ref\|XP_008443927.1\|	2.0e-88	100.00	PREDICTED: uncharacterized protein LOC103487402 [Cucumis melo]	[more]
gi\|449465583\|ref\|XP_004150507.1\|	1.8e-81	93.75	PREDICTED: uncharacterized protein LOC101222911 [Cucumis sativus]	[more]
gi\|566259735\|ref\|XP_006389423.1\|	1.3e-39	53.75	hypothetical protein POPTR_0025s00570g [Populus trichocarpa]	[more]
gi\|147819271\|emb\|CAN71231.1\|	1.7e-39	55.70	hypothetical protein VITISV_009874 [Vitis vinifera]	[more]
gi\|225446215\|ref\|XP_002264040.1\|	1.7e-39	55.70	PREDICTED: uncharacterized protein LOC100267845 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR027370	Znf-RING_LisH
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU51137	melon EST collection version 4.0	transcribed_cluster
MU66428	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010287T1	MELO3C010287T1	mRNA
MELO3C010287T2	MELO3C010287T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU66428	MU66428	transcribed_cluster
MU51137	MU51137	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 131..188 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 131..189 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 125..190 score: 1.
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 131..185 score: 1.
None	No IPR available	PANTHER	PTHR31150	FAMILY NOT NAMED	coord: 39..198 score: 9.7
None	No IPR available	PANTHER	PTHR31150:SF6	SUBFAMILY NOT NAMED	coord: 39..198 score: 9.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 130..191 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C010287	Csa1G217850	Cucumber (Chinese Long) v2	cumeB047
MELO3C010287	Cla012188	Watermelon (97103) v1	mewmB293
MELO3C010287	ClCG06G011730	Watermelon (Charleston Gray)	mewcgB258
MELO3C010287	Cla97C06G120890	Watermelon (97103) v2	mewmbB265
MELO3C010287	Bhi02G000761	Wax gourd	mewgoB290
MELO3C010287	CSPI01G16470	Wild cucumber (PI 183967)	cpimeB048
MELO3C010287	CmaCh10G005120	Cucurbita maxima (Rimu)	cmameB058
MELO3C010287	CmaCh11G005120	Cucurbita maxima (Rimu)	cmameB105
MELO3C010287	CmoCh11G005080	Cucurbita moschata (Rifu)	cmomeB098
MELO3C010287	CmoCh10G005480	Cucurbita moschata (Rifu)	cmomeB049
MELO3C010287	Lsi06G010200	Bottle gourd (USVL1VR-Ls)	lsimeB403
MELO3C010287	Cp4.1LG18g05300	Cucurbita pepo (Zucchini)	cpemeB334
MELO3C010287	Cp4.1LG04g09080	Cucurbita pepo (Zucchini)	cpemeB621
MELO3C010287	CsGy1G017240	Cucumber (Gy14) v2	cgybmeB049
MELO3C010287	Carg09951	Silver-seed gourd	carmeB0131
MELO3C010287	CsaV3_1G028040	Cucumber (Chinese Long) v3	cucmeB054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C010287	Watermelon (Charleston Gray)	mewcgB250
MELO3C010287	Watermelon (97103) v1	mewmB276
MELO3C010287	Cucurbita pepo (Zucchini)	cpemeB716
MELO3C010287	Bottle gourd (USVL1VR-Ls)	lsimeB295
MELO3C010287	Bottle gourd (USVL1VR-Ls)	lsimeB399
MELO3C010287	Silver-seed gourd	carmeB0664
MELO3C010287	Watermelon (97103) v2	mewmbB256
MELO3C010287	Cucurbita maxima (Rimu)	cmameB022
MELO3C010287	Cucurbita moschata (Rifu)	cmomeB011
MELO3C010287	Cucumber (Chinese Long) v2	cumeB057