CSPI01G16470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G16470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RING-H2 zinc finger protein
Location	Chr1 : 12002056 .. 12004928 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATTTAGGAAGGGCATCGGTCAAAAAGGAAAAGGGAATAATATGAAAGGAAGAGGAAGAGGGTTAGAAGAAGTCGAATAAATCATACATACAACAAATCAATTGTTCATCTCTTCTTTACTCATTTTCTTGAACCGTAAATCCCCAGCAATTACAATTATATCAAATCCACCTTTCTGTTTCTGCTCCCAAAAGGCCCCAAACAAAACAAAGAAACCATTCTTTCAATCCATTTCAAAGCATCATCGCCTAAATTTAACCTCCAAATTATATCAATCATCACTCTCTTCGCTTCATTTACAATCTTAATTACTATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATATGCTCTTTCTTTCTCCGATCATATAATCATGCCCGCTTTCTATTTGATAAAATGTCTCAAAGGGACGATTCATTTGTATACGTACACGGTTTTTCTTGTGTGGGGTGTCTCTCGATACGGCGAATCTTATTTTTCTTGAGCTTTGAGAATCAATGGGGTGTATGGGTTTTCTAAGTAATTGGCATTTTTGGATTTCTTTTGAAGAATGAAAATTTTGGATGGCTGGGGGAAATAAAGAATGAAGGGTAGTTTTTCTTTCCCTTTTTAAGTAATATTGGGGTTGGTTTGGGCCTCTTTAAGGATGCATTCTGATTTAGAGATGTAGTTTGATGACTAATCTAAGTCATTTGGCTACTTCATTACCTTTTGGTATGAGCTTTGGCTGGATGCATTTGGGTTGTGTTTCATTTGATTATATCAAGATCAAGATGTGTTGTTCTAGATATCAAGGTGGGGTTGAGTTAATTTTACGCTTTACAACTGATAATTAAGTGAACTCTATGTATGTTTTGTAGTTGGGGTTTCACAAGGTGGGGTTGATGGAATTCCAATTATCCTTTATTTTGAATAATGAAATGTAACATGATTTGTATGTATGTTGTAGGTATGGTTCCTTTTTCTAATCAGACGGATGTGCGGTCGGAAGAGGTCTGTACTCTTTTGTTTGCTTAAGTGAGTAGACAAAAGAATATTTTAATGTTTTCCCTTAGTAGAGAGCATTGAAGTCAGTTTTTTTTTTTTCTTTCTTTTTCCTGCTAGTGGACCACATTCTATTAAACTTACACTGCATTGAATCAACAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACCATAGCCATCAATATTGTTGGCGAGGTTCAACCAGTCAAGCAAATGCATCTGCGTCCCGTGAAAACCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTTAAATTTGCTGCTCATTACAACTCAGAGTTTCCAGACCGTATAGGTACCCTTTTTGAATGAGAGTACTTCTCATGATGGCATGCTAAGTACTTGTTCTTTAAATGTTATAAAGATATTTGAAAATTCATACCCTATATATTATTATGTGCCTCTCTCTAATCAGATGAGAAGACCTGAAAACCTAAATAATGCTAGACATAGGTGTTATGTAAATGTACACCACATCTCAAGTTAATTAAATTTCAACGTTTCTTCTAGTTGGATGATCAGACACCTTGCTTTCAAATATGTTTTGACTGTGTTTGGAGTGACTTGTGACTTATAAAAAATGTGCTTTTAAGCATTTAGAAAATCATTCCACATGGGCAATTCACATTCTTTTTTATGTAAATATATTAGATATCAGTTGCCTGTTTTTTTCTCTCATTTATTTGTAGTTTTGGTGATTTTGGTTCTTGAATTTTGAATAAAGAACAGTCAATTGTTTGGCACGAAACACTTATTTTATGAAGGAAGACGTCCTAAATAAACACATCTTAGGTATTAGAGACCTGAGCCAAATTAAATCCTAATGATCATCTACAAAATGATTAATGAAGATGAAGTATATAACAATATATTAGCCTGTCATCCCACACCATTTGAAGCTCTCGCTCCAGTGGGTGAAGATAGTTGCTTCTTCTACATTGATAATGTTGTTCTTCTGTATTAACTAAATTTTTGCTTCAATTTTAGAGAGCATTGAGAGCACCTTTAGGGAGCCAGAAAGGATAAGGTACAATTCCTTGGGGAAGGATGCTTTTTCATCTCATGTAATGAGAATGATATGTGGTATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACAAAACCGCCTCCTGAAGTCGATGATTCAAAAAGAGGAGAACAAGAATGAGTGGAGTTGTACATATGTTATCACATAGCACCAACATAGGAAATAGAGAACTTGGTTCTGACTTGAATGGGCATATCAAAAAGTGGAGTTTTTGCATCCTCGATTGATTTTCCAAACTAATCAATCACTGTTTTCTCTGGATGGCTGTGATTTAGAAACAGAAAATAGTAACTTTGAATCACAACCATTCAGAAAATAGCGATAATGGGTTGAAAGGTAACAAGGATTTGCCCTCCTTAGATTTCTTTTTGTGTAGAGCTAGATTGACATATGGAAGTCCTTTGGTACCTTATGGAAACATTGTTATCTTGCATAGCAGCAGAGGATTTTAGTCGAGACATCTTCATGGTATTTTGTACTTTTTATATCAATGTCTAAAATAGTATATTTTAGAAAGTATCGATGTTAGCAAAGTTATAATGGAAGTAGATTTTTGTGTTTTCCTTGTAGAAAAAATGATGGTAATGAGTAATCTATTTCAAAGGTTGTG

mRNA sequence

ATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATGGTTCCTTTTTCTAATCAGACGGATGTGCGGTCGGAAGAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACCATAGCCATCAATATTGTTGGCGAGGTTCAACCAGTCAAGCAAATGCATCTGCGTCCCGTGAAAACCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTTAAATTTGCTGCTCATTACAACTCAGAGTTTCCAGACCGTATAGAGAGCATTGAGAGCACCTTTAGGGAGCCAGAAAGGATAAGGTACAATTCCTTGGGGAAGGATGCTTTTTCATCTCATGTAATGAGAATGATATGTGGTATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACAAAACCGCCTCCTGAAGTCGATGATTCAAAAAGAGGAGAACAAGAATGA

Coding sequence (CDS)

ATGGGGAAGCGCAAGCGAGGCTCTGATCAGACCCACCACGATCCTCCTCTTCATCTCTCCGGTATGGTTCCTTTTTCTAATCAGACGGATGTGCGGTCGGAAGAGGATACGAGTCTTGCCCGTCCAATATTCATGAAACGTTCACGTCATCACCATAGCCATCAATATTGTTGGCGAGGTTCAACCAGTCAAGCAAATGCATCTGCGTCCCGTGAAAACCGAGTCAGAACTGTCCTTGAGGAACGACCCGCTTTTAAATTTGCTGCTCATTACAACTCAGAGTTTCCAGACCGTATAGAGAGCATTGAGAGCACCTTTAGGGAGCCAGAAAGGATAAGGTACAATTCCTTGGGGAAGGATGCTTTTTCATCTCATGTAATGAGAATGATATGTGGTATTTGCCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTAGGGAACACACTTTCTTCTAGTGAACTTCCCGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGAATGTCTGGAGAACAGGTCAAGTGTGGAAGATAGAAGCGACCCACCTTGTCCATTGTGCACAAAACCGCCTCCTGAAGTCGATGATTCAAAAAGAGGAGAACAAGAATGA

Homology

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BLAST of CSPI01G16470 vs. TrEMBL
Match: A0A0A0LT71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G217850 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 2.8e-115
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD
Sbjct: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTKPPPEVDDSKRGEQE
Sbjct: 181 SDPPCPLCTKPPPEVDDSKRGEQE 204

[Close]

BLAST of CSPI01G16470 vs. TrEMBL
Match: A9P889_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00570g PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-37
Identity = 84/182 (46.15%), Postives = 115/182 (63.19%), Query Frame = 1


Query: 21  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLE 80
           G +   N     + ++ +L R I +KRSRHH+ HQY  R S S A+AS SR  +     +
Sbjct: 57  GSLKLLNVHHSHAHQNYNLGRSIVLKRSRHHYGHQYSRRNSGSHADASTSR-GKTALSCD 116

Query: 81  ERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRR 140
           ER  FK ++H  SE     E+ E  F  P+R+R+NSL  DA SS  ++++CGICQKL+RR
Sbjct: 117 ERLTFKLSSHLGSEPGCHTENKELEFSRPDRVRFNSLVMDAVSSDALKIVCGICQKLVRR 176

Query: 141 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKR 200
           K  F+GN L++ E  V A+LVCGHVYH+ECLE ++S+ED  DPPCPLC+    E D  + 
Sbjct: 177 KPYFIGNALTAGEFSVVAILVCGHVYHSECLEQKTSLEDMRDPPCPLCSGLLSEEDAPRE 236

Query: 201 GE 203
            E
Sbjct: 237 QE 237

[Close]

BLAST of CSPI01G16470 vs. TrEMBL
Match: A5AFH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009874 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 89/179 (49.72%), Postives = 112/179 (62.57%), Query Frame = 1


Query: 26  SNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAF 85
           SN     S    +L+R + ++RSRHH+ HQY  R S + A+AS S   ++    +E+ +F
Sbjct: 58  SNPHHPLSHHHYNLSRTLLLRRSRHHYGHQYSRRNSANHADASTSH-GKITPSCDEKLSF 117

Query: 86  KFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFL 145
           K A H  S+F     S E  F  PERIR +S   DA S  ++RM+CGICQ+ +RRK   L
Sbjct: 118 KLANHSKSDFGQHTGSREKAFFRPERIRSSSSVVDAVSLDMVRMVCGICQRPLRRKPYCL 177

Query: 146 GNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQE 205
            N LSSSEL V AVLVCGHVYHA+CLE R+  EDR DPPCPLC     +VDDS  G QE
Sbjct: 178 ENVLSSSELSVVAVLVCGHVYHADCLEQRTCHEDRQDPPCPLCVGLLSKVDDS--GGQE 233

[Close]

BLAST of CSPI01G16470 vs. TrEMBL
Match: D7T4X1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00330 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 89/179 (49.72%), Postives = 112/179 (62.57%), Query Frame = 1


Query: 26  SNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAF 85
           SN     S    +L+R + ++RSRHH+ HQY  R S + A+AS S   ++    +E+ +F
Sbjct: 71  SNPHHPLSHHHYNLSRTLLLRRSRHHYGHQYSRRNSANHADASTSH-GKITPSCDEKLSF 130

Query: 86  KFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFL 145
           K A H  S+F     S E  F  PERIR +S   DA S  ++RM+CGICQ+ +RRK   L
Sbjct: 131 KLANHSKSDFGQHTGSREKAFFRPERIRSSSSVVDAVSLDMVRMVCGICQRPLRRKPYCL 190

Query: 146 GNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQE 205
            N LSSSEL V AVLVCGHVYHA+CLE R+  EDR DPPCPLC     +VDDS  G QE
Sbjct: 191 ENVLSSSELSVVAVLVCGHVYHADCLEQRTCHEDRQDPPCPLCVGLLSKVDDS--GGQE 246

[Close]

BLAST of CSPI01G16470 vs. TrEMBL
Match: V4UUQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009344mg PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 102/240 (42.50%), Postives = 132/240 (55.00%), Query Frame = 1


Query: 1   MGKRKRGSDQTHH--DPPLHLSGMVPFSNQTDVRSEEDTS-------------------- 60
           MGKRKRG+DQ H+  DPP   S  +P S+ T+  S++  S                    
Sbjct: 1   MGKRKRGADQHHNSNDPPAS-SDNIPCSSGTEALSKQKPSQFVDSSDLKPFSSGMEITDN 60

Query: 61  ------------LARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLEERPAFK 120
                       L R +F+KRSRHH+SHQY  R   +  N S+S   +     EER +FK
Sbjct: 61  SVKLLNAHHHYNLGRSVFLKRSRHHYSHQYSRRNLGNHGNGSSSL-GKGPPSREERLSFK 120

Query: 121 FAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRK--LCF 180
            A+H N+E     E  E  F   ERIR++SL  +A S   +++ICGICQKL+RRK  L  
Sbjct: 121 LASHCNTEPGSHAEKREKPFSRSERIRFSSLVTNAASPDTVKIICGICQKLLRRKSHLLG 180

Query: 181 LGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKRGEQE 205
           +G+T+ S E    AVLVCGHVYHA+CLE R+S ED  DPPCPLC     +V+ S  G QE
Sbjct: 181 MGSTIPSGEQHAVAVLVCGHVYHADCLEQRTSAEDIRDPPCPLCLGSLTQVESS--GVQE 236

[Close]

BLAST of CSPI01G16470 vs. TAIR10
Match: AT1G75400.1 (AT1G75400.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 118 GKDAFS---SHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENR 177
           G   FS   S V + +CG C KL+  +     +++++ ELP+AAVL CGHVYHAECLE  
Sbjct: 265 GSSRFSFSPSVVDQQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETM 324

Query: 178 SSVEDRSDPPCPLCT 190
           ++  ++ DP CP+CT
Sbjct: 325 TTDIEKYDPACPICT 334

[Close]

BLAST of CSPI01G16470 vs. TAIR10
Match: AT1G19680.1 (AT1G19680.1 RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-11
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1


Query: 123 SSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSD 182
           S  V +  CG C KL+  +     + ++  +LP+ AVL CGHVYHA CLE  ++  ++ D
Sbjct: 265 SPSVDQQTCGRCSKLLTER-----SPVARFDLPIPAVLACGHVYHAACLETMTNETEKYD 324

Query: 183 PPCPLCTK 191
           P CP+CT+
Sbjct: 325 PTCPICTE 327

[Close]

BLAST of CSPI01G16470 vs. TAIR10
Match: AT2G21500.2 (AT2G21500.2 RING/U-box superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 131 CGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCT 190
           CG C + L  + L       +++EL VAA+L CGHVYH+ECLE  +   D+ DP CP+CT
Sbjct: 251 CGACSRSLSEKSLLSSQKIFATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICT 310

[Close]

BLAST of CSPI01G16470 vs. TAIR10
Match: AT4G39140.1 (AT4G39140.1 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 31/80 (38.75%), Postives = 43/80 (53.75%), Query Frame = 1


Query: 117 LGKDAFSSHVMRM------ICGICQKLMRRKLCFLGNTL-SSSELPVAAVLVCGHVYHAE 176
           L +D    H  RM       CG C + +  K  +    +  ++EL V+A+L CGHVYH E
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 177 CLENRSSVEDRSDPPCPLCT 190
           CLE  +   D+ DP CP+CT
Sbjct: 300 CLEQMTPEIDKFDPSCPICT 319

[Close]

BLAST of CSPI01G16470 vs. TAIR10
Match: AT1G14180.1 (AT1G14180.1 RING/U-box superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08
Identity = 33/108 (30.56%), Postives = 55/108 (50.93%), Query Frame = 1


Query: 88  AAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRRKLCFLGN 147
           A  ++S  P  I+S++    EP     N+  K    +      CG+C + + +K  +   
Sbjct: 144 ACSWSSGTPSSIDSVDVP--EPVLDWNNNSTKAQQVAASSTFKCGLCNRYLSQKSPWGSR 203

Query: 148 TL-SSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPE 195
           ++  + ++PV  VL C HV+H ECL+  +    R+DP CP+CTK   E
Sbjct: 204 SIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICTKQEGE 249

[Close]

BLAST of CSPI01G16470 vs. NCBI nr
Match: gi|449465583|ref|XP_004150507.1| (PREDICTED: uncharacterized protein LOC101222911 [Cucumis sativus])

HSP 1 Score: 422.5 bits (1085), Expect = 4.1e-115
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD
Sbjct: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTKPPPEVDDSKRGEQE
Sbjct: 181 SDPPCPLCTKPPPEVDDSKRGEQE 204

[Close]

BLAST of CSPI01G16470 vs. NCBI nr
Match: gi|659086424|ref|XP_008443927.1| (PREDICTED: uncharacterized protein LOC103487402 [Cucumis melo])

HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107
Identity = 194/204 (95.10%), Postives = 197/204 (96.57%), Query Frame = 1


Query: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRG 60
           MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHH+SHQYC RG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKD 120
           STSQANAS SRENRVRTVLEERPAFKFAAH NSEFPDRIESIESTFR PERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 AFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180
           A SSH+MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLCTKPPPEVDDSKRGEQE 205
           SDPPCPLCTK PPEVDDSK GEQE
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of CSPI01G16470 vs. NCBI nr
Match: gi|694354804|ref|XP_009358549.1| (PREDICTED: uncharacterized protein LOC103949173 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 96/203 (47.29%), Postives = 127/203 (62.56%), Query Frame = 1


Query: 1   MGKRKRGSDQTHHDPPL---HLSGMVPFSNQTDVRSEED-TSLARPIFMKRSRHHHSHQY 60
           M KRK  SD   H PP    H S  +P S+  D+ ++E   SL R +F++RSRHH++HQY
Sbjct: 1   MSKRKLPSDD--HSPPSFSPHSSDTMPCSSGMDLLTQEHHPSLGRSMFLRRSRHHYAHQY 60

Query: 61  CWRGSTSQANASASRENRVRTVLEERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNS 120
             R S + AN S SR   V  + +++ ++K A   +SE     E+ E  F  P RIR   
Sbjct: 61  SRRTSGNLANPSTSRGKGV-PLHDDKLSYKLATQSSSESRRHSEAKEKPFLWPARIRSRF 120

Query: 121 LGKDAFSSHVMRMICGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSS 180
           L  DA S    +M+CGIC KL RRK  FLG+TLSS+E+ V AVLVCGH+YHA+CLE ++S
Sbjct: 121 LATDAVSPDPGKMVCGICDKLFRRKPFFLGSTLSSTEVSVVAVLVCGHLYHADCLEQKTS 180

Query: 181 VEDRSDPPCPLCTKPPPEVDDSK 200
            EDR DP CPLC    P+V+DS+
Sbjct: 181 FEDRHDPHCPLCAGLLPKVEDSR 200

[Close]

BLAST of CSPI01G16470 vs. NCBI nr
Match: gi|566259735|ref|XP_006389423.1| (hypothetical protein POPTR_0025s00570g [Populus trichocarpa])

HSP 1 Score: 163.7 bits (413), Expect = 3.4e-37
Identity = 84/182 (46.15%), Postives = 115/182 (63.19%), Query Frame = 1


Query: 21  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLE 80
           G +   N     + ++ +L R I +KRSRHH+ HQY  R S S A+AS SR  +     +
Sbjct: 57  GSLKLLNVHHSHAHQNYNLGRSIVLKRSRHHYGHQYSRRNSGSHADASTSR-GKTALSCD 116

Query: 81  ERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRR 140
           ER  FK ++H  SE     E+ E  F  P+R+R+NSL  DA SS  ++++CGICQKL+RR
Sbjct: 117 ERLTFKLSSHLGSEPGCHTENKELEFSRPDRVRFNSLVMDAVSSDALKIVCGICQKLVRR 176

Query: 141 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKR 200
           K  F+GN L++ E  V A+LVCGHVYH+ECLE ++S+ED  DPPCPLC+    E D  + 
Sbjct: 177 KPYFIGNALTAGEFSVVAILVCGHVYHSECLEQKTSLEDMRDPPCPLCSGLLSEEDAPRE 236

Query: 201 GE 203
            E
Sbjct: 237 QE 237

[Close]

BLAST of CSPI01G16470 vs. NCBI nr
Match: gi|743806256|ref|XP_011017872.1| (PREDICTED: uncharacterized protein LOC105121076 isoform X1 [Populus euphratica])

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 83/182 (45.60%), Postives = 115/182 (63.19%), Query Frame = 1


Query: 21  GMVPFSNQTDVRSEEDTSLARPIFMKRSRHHHSHQYCWRGSTSQANASASRENRVRTVLE 80
           G +   N     + ++ +L R I +KRSRHH+ HQY  R S S A+AS SR  +     +
Sbjct: 59  GSLKLLNVHHSHARQNYNLGRSIVLKRSRHHYGHQYSRRNSGSHADASTSR-GKAALSCD 118

Query: 81  ERPAFKFAAHYNSEFPDRIESIESTFREPERIRYNSLGKDAFSSHVMRMICGICQKLMRR 140
           ER  FK ++H  SE    + + E  F  P+R+R+NSL  DA  S  ++++CGICQKL+RR
Sbjct: 119 ERLTFKLSSHLGSEPGCHMGNKELEFSRPDRVRFNSLVMDAVLSDALKVVCGICQKLVRR 178

Query: 141 KLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDRSDPPCPLCTKPPPEVDDSKR 200
           K  F+GN L++ E  V A+LVCGHVYH+ECLE ++S+ED  DPPCPLC+    E D S+ 
Sbjct: 179 KPYFIGNALTAGEFSVVAILVCGHVYHSECLEQKTSLEDMRDPPCPLCSGLLSEEDASRE 238

Query: 201 GE 203
            E
Sbjct: 239 QE 239

The following BLAST results are available for this feature:

BLAST of CSPI01G16470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G16470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT71_CUCSA	2.8e-115	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G217850 PE=4 SV=1	[more]
A9P889_POPTR	2.4e-37	46.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00570g PE=2 SV=1	[more]
A5AFH6_VITVI	7.6e-36	49.72	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009874 PE=4 SV=1	[more]
D7T4X1_VITVI	7.6e-36	49.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00330 PE=4 SV=...	[more]
V4UUQ1_9ROSI	7.6e-36	42.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009344mg PE=4 SV=1	[more]

BLAST of CSPI01G16470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75400.1	2.1e-13	45.33	RING/U-box superfamily protein	[more]
AT1G19680.1	7.6e-11	41.18	RING/U-box superfamily protein	[more]
AT2G21500.2	1.3e-10	46.67	RING/U-box superfamily protein	[more]
AT4G39140.1	2.2e-10	38.75	RING/U-box superfamily protein	[more]
AT1G14180.1	1.6e-08	30.56	RING/U-box superfamily protein	[more]

BLAST of CSPI01G16470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465583\|ref\|XP_004150507.1\|	4.1e-115	100.00	PREDICTED: uncharacterized protein LOC101222911 [Cucumis sativus]	[more]
gi\|659086424\|ref\|XP_008443927.1\|	2.4e-107	95.10	PREDICTED: uncharacterized protein LOC103487402 [Cucumis melo]	[more]
gi\|694354804\|ref\|XP_009358549.1\|	2.0e-37	47.29	PREDICTED: uncharacterized protein LOC103949173 isoform X1 [Pyrus x bretschneide...	[more]
gi\|566259735\|ref\|XP_006389423.1\|	3.4e-37	46.15	hypothetical protein POPTR_0025s00570g [Populus trichocarpa]	[more]
gi\|743806256\|ref\|XP_011017872.1\|	1.7e-36	45.60	PREDICTED: uncharacterized protein LOC105121076 isoform X1 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR027370	Znf-RING_LisH

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G16470.1	CSPI01G16470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 131..188 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 131..189 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 128..193 score: 1.
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 131..185 score: 1.
None	No IPR available	PANTHER	PTHR31150	FAMILY NOT NAMED	coord: 39..198 score: 2.4
None	No IPR available	PANTHER	PTHR31150:SF6	SUBFAMILY NOT NAMED	coord: 39..198 score: 2.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 130..193 score: 5.98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G16470	Cla012188	Watermelon (97103) v1	cpiwmB102
CSPI01G16470	Csa1G217850	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G16470	MELO3C010287	Melon (DHL92) v3.5.1	cpimeB048
CSPI01G16470	ClCG06G011730	Watermelon (Charleston Gray)	cpiwcgB086
CSPI01G16470	Lsi06G010200	Bottle gourd (USVL1VR-Ls)	cpilsiB074
CSPI01G16470	MELO3C010287.2	Melon (DHL92) v3.6.1	cpimedB042
CSPI01G16470	CsaV3_1G028040	Cucumber (Chinese Long) v3	cpicucB011
CSPI01G16470	Cla97C06G120890	Watermelon (97103) v2	cpiwmbB082
CSPI01G16470	Bhi02G000761	Wax gourd	cpiwgoB085
CSPI01G16470	CmaCh10G005120	Cucurbita maxima (Rimu)	cmacpiB053
CSPI01G16470	CmaCh11G005120	Cucurbita maxima (Rimu)	cmacpiB089
CSPI01G16470	CmoCh11G005080	Cucurbita moschata (Rifu)	cmocpiB081
CSPI01G16470	CmoCh10G005480	Cucurbita moschata (Rifu)	cmocpiB044
CSPI01G16470	Cp4.1LG04g09080	Cucurbita pepo (Zucchini)	cpecpiB660
CSPI01G16470	Cp4.1LG18g05300	Cucurbita pepo (Zucchini)	cpecpiB365
CSPI01G16470	CsGy1G017240	Cucumber (Gy14) v2	cgybcpiB008
CSPI01G16470	Carg09951	Silver-seed gourd	carcpiB0141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None