MELO3C008710 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008710
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding protein 42
Location	chr5 : 17651457 .. 17659321 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGAGTAAGTTTATTTAGTCTAATATTATTCTACATAATTCACCTTTTATTTTCAATTTTTGTTTTTGGCACTATGCACGGTGGTTAGTTTTCTTGAAATCTTCTGGACTGTTTAAAATGTGGTAATGCATCTGGGTACATCTTGTTTTTACGTTTACGTGGGGTTATGACTGCGTTTGAAGCTTCTGATTGCTGGTACCCGTTCCTTGAATTTCAATGTCTTTTTTTGATATTTTTTTAGGTTTATTTAAGTTCTATTTTGGTCAAAACAAACTTGTATATTATTTTATTTGGGTTCTAAACTCTTAAATATTCTGCTTTGGTCTTGAAGCTTTTGATTTCATCCCCTGAACTATGCTATTTTGTTAGACCTCCAATCAAGTTAGTTTACCAAAGAAGAAACAAACTACAACAGAATTAGTTAAGAAAGTAGTTAACAGATTAGTTAGAAAACACATGTTAAATGTGTTAAGAAAAATGTGTATAAATAGAGGATTAATGATAGAAGAATGATATGGGAAATCTAGTGAGAAGTTGTACTTGATTCTTGAGAAGCAAGATCAAGAGCTTGTGGCAGAATTGATAACTCATCAATTCTGTGTGTTCATTGTTACCGATATTAATAAGAGAAGGATAAATTCAGTTTACTTGGTTGGAGTTCTATCAAATTGGTATCAGAGCCCGTGATCCGACAAAATGGTGCAAACTAGGATCGAAGAACGACTTGAAGTAATTGATCAAGAAATAGCACTGATGAAGAAAGAACTCGGGAAGATGCCGATCATCGAATTAAGCCTGAACGATATCGCGAAGAATATGCAGACGATGCGAGCCCAGTCGGACAAACAAGAGCAGATGATGCTGATGATAATGGAAACTATAGCCAAAGATCGAACTACCACCAGCGAACGTAATGAAGAGCCCAACGCGCACATGTTAGTGACAAATAAGGGAAAGGAAAAAGAAGCAAACTCCAGCAAATTGGCCGTATCGGGTCGAAGTAACTCCGACGACCGAAACGAAGGAAAAACAGAGACCGAAGAAGCTGCAGCCGACCGGAATAAATTCAAGAAAGTCGAAATGCCCGTGTTCGCCGAAGAAGATCCAGACTCGTGGCTCTTCAAAGCCGAAAGGTACTTTCAGATCCATAAACTCTTCGATTCTGAGAAAATGCTAGTTTCCACGATCAGTTTCGACGACCCTGCCTTGAATTGGTACCGATCTCAAGAAGAAAAAGAGAAGTTTTCACCAGCTGGTTAAACTTGAAAGAAAGACTATTGGTAAGGTTCAGATCGAGCAGAGACGGAACGATATTGGGGAAGTTCTTACAAGTTAAGCAAGAATCTACAGTCGATGATTACCGGAATTTGTTCGACAAACTCGTTGCACCATTGAGTGATGTTCCAGATCCGGTCGTCGAAGATACCTTCATGAATGGCTTGTTCCCATGGATAAGAGCAGAGGTAATACTCTGTCGACCAAAAGGATTAGCCGAAATGACGGAATTCGCGCAATTGGTCAAGAACAGAGAAATCGTGTGGAACGAAGCAAATTTGAATAACCTCGTGGGCGGGAAATATTTTCAGCAAAATACAATAAACAACAGAACATCGGCAAACACCCACAGCGATAACAAGACGAATACCAATTTCCCTATGCGAACTATCACCTTGAGGAGCTCTAATAAGCCGAAATTCGTAAAGTTACCAACTCAAGAAGATTACCCGACGCAGAGTTCCAGGCCCGAAAAGAAAAAGGACTCTGTTTTAGATGCAACGAAAAATACTCAGCTGATCATAGATGCAAAATGAAAGAATTACGCGAACTGAAAATGTTTGTTGTGAAAAAAGAAGGCGAGAAATACGAGATAATTGAGGAAAATACCACTGAAGAAAAAACATTAGAACCACCGCAAGAAGAAGAAAAGGAAAAGACCTTTGCCGAATTATCTCTAAACTCTGTTGTTGGGCTGAACGATCCGGGCACGATGAAAGTCAAAGGAAAACTCCAAAAGAAAGAAGTGATCATCCGCATAGATTGTGGAGCCACCCACAACTTCATTTCTGAAAAATTAGTGGAATCACTACAATTACCGGTCAAGGAAACCGCCCACTACGGTGTTATACTTGGATCCGGAACAGCAGTACAAGGCAAAGGAATATGTGAAAACGTGGAAATTCAACTAACAAATTGGAAAGTGAAGGAAGAATTTCTACCATTAGAACTCGGAGGAGTTGATGTCGTACTAGGTATGCAATGGCTCCATTCGCTCGGAATAACAATAGTCGATTGGAAAAACCTCACACTTACATTTTCTAGTGAGGGAAAACAGATCTCAATAAAAGGAGACCCCAGCCTCACTAAGTCACGAATTAGCCTTAAAAGTATGATCAAGACCTGGGTTGAGCAAGATGAAGGATTCTTAATCGAATGCAGAGCAGTACAAGTTCATAAAGAAAATGAACGAATTAATACAGCAGTAACAACCATTGAAGATGAACCCCTGCAAAACGTGCTGAAACAGTTCGAAGATGTATTTGACTGGCTGGAAAAACTTCCACCAAGAAGAGGAATTGAACACCAAATACACCTCAAAGAAGGAACCAATCCAATAAACGTTAGACCCTATAGATATGGGTTTCAACAAAAAGCAGAAATGGAAAGATTAGTGGAGGAAATGCTAACTTCAGGCATCATCAGACCAAGTAATAGCCCCTTCTCAAGCCCTGTACTATTAGTTAAAAAGAAAGATAGCAGCTGGCGCTTCTGTGTCGATACCGAGCAATAAATAACGCCACAATTCCAGACAAGTTCCCAATACCAATGGCTGAAGAACTATTTGACGAGCTAAATGGGGCAACGGTGTTCTCAAAAATAGACCTCAAGTCAGGATACCACCAAATAAGAATGATTGATAAAGATATTCCAAAGACGGCTTTTCGCACTCACGAAGGCCACTACGAATTCCTTGTTATGCCGTTTGGGTTAACCAACGCCCCGGCCACTTTCCAAGCCTTAATGAATAGCATCTTTAGACCATTTTTGAGAAAGTTTGTTCTGGTCTTCTTCGATGATATCCTGATCTACAGCAAGAATGAGAAAGACCACATAGAGCCTATTGAAAAGGTCTTCCTTGCATTGAGAAAGCATACCCTCTTCGCCAATAAAAAGAAGTGCAACTTTGGCTAGAAGAAGGTAGAATACTTGGGACATATCATATCAGGAGAAGGAGTGGAAGTAGACTCTGAGAAAATAAAGGCAGTTGCGGATTGGCCATGCCCAACAAATATAAGAGAAGTCCGGGGATTCCTTGGATTAACCGGCTACTACAGGAGATTTGTCCAATATTATGGATCAATAGCAGCCCCATTAACTCAACTACTCAAAAAGGGGGGTTCAAATGGAACGAAGATGCTGAAGAATCGTTTCGAAAGCTGAAATCTGCAATGATGTCTCTGCCAACGTTAGCCTTACGCAACTTTACACTTCCATTTGAAATAGGAACAGATGCATCCGGTTTTGGGGTGGGAGCAGTATTAATTCAGTCAAAGAGACCCATTGCCTTCTACAGCCATACACTATCCATGAGAGATAGAGCCCGACCAGTATATGAACGCGAGTTGATGGCTGTTGTACTATCCGTACAAAGATGGAGGCCATACTTACTTGGGGCAAAATTCGTAGTAAAAACGGATCAAAAGTCGCTGAATTCTTGCTAGAACAAAGGGTTATCCAACCACAATATCAAAAATGGCTATCTAAACTATTGGGATACTCATTTGAAGTGGTGTACAAACCGGGCTTAGAAAATAAAGCAGCCGATGCTTTATCAAGAAGACCACCAGATATACATTTAAACAGCATCTCAGTACCATATTGGATGGACTTGGAAACCATAAAGGAAGAAGTGGAGAAAGATGAAAAGCTAAAGAAGATAGTAGCAAGCTTAAGCAAAGAAGACGAAAACCAAACCAGCAAATTCACACTAAAGAATGGCCTCCTGCATTACAAGAATAGACCGGTAATCTCAAAAGCTTCCTCCCTAATTCCAGCCATATTGAATACGTTTCATGACTCAGTAGTAGGAGGACACTCCGGGTTCCTAAGAACATATAAAAGACTAGCAAGTGAGCTATATTGGGAGGGGATGAAATCAGATGTCAAAAAAACATTGTAATCTTGCATAACTTGCCAACGCAACAAAAGCTTAGCTCTATCACCAGCCGGACTATTAATGCCACTTGAAATACCGCATCAAATTTGGAGCGACATCTCTATGGACTTCATTGATGGTCTACCTAAAGCAAAAGGATGGGATGTAATACTCGTGATAGTAGATCGGCTCAGCAAATACAGCCACTTCTTGGCCCTTAAACACCCTTACACAGCCAAGATAGTAGCAGAAATCTTTGTAAAAGAAATAGTTCGACTGCACGACTTCCCTACTTCCATTGTCTCCGATCGAGACAAAGTTTTTCTCAGCCATTTCTGGAATGAATTGTTCAAAATGGCAGGCACTAAACTCAAGAAAAGCACAGCTTACCACCCACAGACCGACGGACAAACAGAGGTGGTAAACAGGGGACTAGAAACCTATCTCAGATGCTTTTGTAGTGAACGCCCAAAGGAATGGATTCTGTGGCTACCTTGGGCCGAGTACTGGTACAACACTACTTATCAAAAGGCGCTAGGAAAATCACCCTTCCAAGTGGTCTATGGACGTAAACTGCTAGCCCTACTATCTTATGGAGACAGAAGAATCTCAAATTCCTCAATAGACGAGCAGTTGAAAGAACGAGATGTGGCATTAGACGCACTACGGGAACATTTATTGCTAGCTCAACAACAAATGAAACTATATGCTGACCGAAAAAGAAGACAAGTGGAATTCCAGGTTGATGAATTAGTGCTGCTTAAAATACGTCCATACCGACAAACCACTTTACGAAGCAAAAGGAATAAAAAGTTATCATCACGGTATTTTGGACCTTACAAAATTCTCGAAAGAATTGGTGAGGTAGCGTATAGATTGGAATTACCAACGGATGCAGCTATCCACCCTGTTTTTCATGTTTCGCAACTAAAGAAGTTCGTAAATCAGCAGACAAATATATTGCCCACACTACAAAACATAACAGAGAAGCTCGAGTGGCAATCTCAACCGGAAGAAGCACGTGACTACAGACAAGACAAAACCGGGAAATGGGAAGTGTTAATTGCCTGGAAGAATTTACCGGACTATGAAGCATCGTGGGAAGACTATGATGAGATAAACCAGCGGTATCCTAATCTACACCTTGAGGACAAGGTGAATCTCAAAGGGGGGAGTAATGTTAGACCTCCAATCTTTTAGTTTACCAAAGAAGAAACAAACTACAACAGAATTAGTTAAGAAAGTAGTTAACAGTTTTTTATTAGTTAGAAATTTTTTACACATGTTAAATGTGTTTAGATTTTTTAAAATTTTTTTGTGTATAAATAGAGGATTAATGATAGAAGAATGATATGGAAAATTTAGTGAGAAGTTGTACTTGATTCTTGAGAAGCAAGATCAAGAGCTTGTGGCAGAATTGATAACTCATCAATTCTGTGTGTTCATTGTTACCGATATTAATAAGAGAAGGATAAATTCAGTTTACTTGGTCGGAGTTCTATCATATTTATCAATTCTTTTTGGTCAATCGCTTGGAATTTCCTAACCTGATTTGTGCTACTCAAATTACTTATCTATGTTGACACTAAACACGTAAAGGAACAAAAGCTGTGTCATATCATGTTTCTGCTAAATGATTTATAAATGTTAAAAGAAAATTAATGACAGTGACAAAATATTCTTTTATGCAAAGCTGAAGGACGAAAATGGAATTATCTGGAAAACCAAAATGAAAAAAGTACTATAGCTCCAAAGTAAAATAGTAGTACCTTTTTTTTCATGTTTCATAAATATTATTTGTGGGGCTATTAATTTTATTTAAGAAAGACGTGATCATCTGATTGGGAATTGTGCAGCTGGAACCTCTTTATGGATCTTGTATGTAAACCCTTGGAATTTACTGAGTTCATGGACTAGCTTGAGTTGTAACATGGTTGGGTCATTTAAGCTTGTAAGAAAGAGGTCAGGTCTGAAGCTTTTAAAAGCGGGACTTCTTTTCCTTGGTCATTCTGACTATCTTTCTGCTTGTGGGGATAAGGGGAAAATACCTAAAAATTTTGGGCGTGAAACTATACATGAAATTTTCAATAGCGACATGAAGACAGTGAGCTCTCTGCTTTGAGTAATTTTTCTTTTGGTATTCGGTCATGAATTTTGAAGATAGGAGCTATTATAGTGATGGGTTCTGCGATTTCCCCATGTAGGTGCATATATTCGTGCTTTTTGGTCATTGTATATTCATCCGGTTAAATATATGACCACCTTCACTCACATTTCATGTCTGGTATTGGGTCCTATCACCGGAAGGTTTATTTGATTTGTGTTAATGTTTCCTCATGGACATTGTGTCGGTGAACCTAACTTAATTCTCACAAACATTTGTATGTTCTGGACCATGGTCAATTTCAAATACATTGCCCAATTGTTAAAAGGACTTCCATGTCGAACATTTTAGGAGTGGTTTTGACCATATCTTTTATATACGCGAGTGTCTAGGCCAACTTACGTGCACCTCGACTAATCTCACAAGACAACTTGTCTGACCTTACCACATTTAGGTGTCAAGGAAACTCGTAGAAAGTTGTTTTGACCGATTGATGCATCTTTTATAAGAAACAATTTGAACTCTGTATCTTGGAAAATGTATACTATTTTATGACTTTGAAGATTGACCTAAATTATTTTGATATTTTATTTATGGTTTATGTTTATTGATTACGTTGTTCTTTGGGGAATATTTTCTTTTTACCAATGGATTAACATGCATATAATTTTGTCAAGGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGCTTCTCCAATCCTACCGACCTTGCTGGAGCACTTAAAGAAATGAATGGTAATATTCTGATTTTAGATCTATATGGGTTCGCCAGTTATTTCATCTCTCTGTTGGACTCGTGCTTCTTGTTCAATTCTCATGACATGTACTGTGTAACCCTACTGACCTTGTGCAAGATTTTATTAGAAGATTTTGAATGGAAAAAACCTTGTTTTGTGGTTGGTTAAGTAACAAGTGTTTGGTTTTTCTTCAATTTGCAGTTTTCTTTCTCTCAGAAACATTTGAAAGAAAATTTTAGATTTTAAATTGTAGATTTGAATTTTTTTTTTTTTTTTGGTTGAAATTTTAAATTGTCCTTTTAAAAAGGACAGTATGAATTACTTTCTAAAAGAACTAAGTAAAAGATGGTTTGGAACTAGCATAGATGAATCTCATGGTCAAATCCTCGAGCGTGTGCCATCTAGGCTGTGGTAGCTAGAGTTTATAAAGATGTGAAGTTTGCCATTTTTCGATGTCTTATGTTTTCCTACAAATTATCTGAAACTATTCTTTACATCCTTTCTTTAATCCTTGAAGCCTTCTTTCCCTTTACTTCCTTTTGTTATCGTTTATGTGCTTAGACCCTTCTTGATCACAGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTAGGAAGACACAAGGTAAAGTAACGTACTATGGGGGGTTCTTTTGCACCCTCATTTCTTGCTTTCTTTCGATGCTCAAACTTCTAATTTGGATGTGTTTACTAATCGACTAATTTAATTACAGAATCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAA

mRNA sequence

ATGGCAAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGCTTCTCCAATCCTACCGACCTTGCTGGAGCACTTAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTAGGAAGACACAAGAATCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAA

Coding sequence (CDS)

ATGGCAAGAGTTGTTAGAGATAAGCGAACTGGTAAAACCAAGGGCTATGGATTTGTTAGCTTCTCCAATCCTACCGACCTTGCTGGAGCACTTAAAGAAATGAATGGCAAGTACGTCGGAAATAGGCCGATAAAACTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGAAGCCCTAGGAAGACACAAGAATCACACACAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAA

Protein sequence

MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQKKSKLPKKSILHK*

Homology

[Close]

BLAST of MELO3C008710 vs. Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.4e-18
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 55
           A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 322 AKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR 374

[Close]

BLAST of MELO3C008710 vs. Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 7.0e-18
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALG 61
           A+VVRDKRTGKTKGYGFVSF +P D   A++EMNG+YVG+RPIKLRKS WK+R + E + 
Sbjct: 332 AKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSAWKDR-NLEVV- 391

Query: 62  RHKNHTQKK 71
             KN  +KK
Sbjct: 392 -RKNQKEKK 397

[Close]

BLAST of MELO3C008710 vs. Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.0e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 55
           A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 404 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 456

[Close]

BLAST of MELO3C008710 vs. Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.0e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 55
           A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 404 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 456

[Close]

BLAST of MELO3C008710 vs. Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.0e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKER 55
           A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKLRKS WK+R
Sbjct: 410 AKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDR 462

[Close]

BLAST of MELO3C008710 vs. TrEMBL
Match: A0A0A0LH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.7e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL
Sbjct: 173 MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 232

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
           GRHKNHTQKKSKLPKKSILHK
Sbjct: 233 GRHKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of MELO3C008710 vs. TrEMBL
Match: A0A0E0QMK2_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGA+KEMNGKYVGNRPIKLRKSNWKERTD +AL
Sbjct: 155 MARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDAL 214

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R KNH QKK K+PKKSILHK
Sbjct: 215 ERQKNHIQKKPKMPKKSILHK 235

[Close]

BLAST of MELO3C008710 vs. TrEMBL
Match: B8B9N2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30332 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGA+KEMNGKYVGNRPIKLRKSNWKERTD +AL
Sbjct: 155 MARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDAL 214

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R KNH QKK K+PKKSILHK
Sbjct: 215 ERQKNHIQKKPKMPKKSILHK 235

[Close]

BLAST of MELO3C008710 vs. TrEMBL
Match: A0A0E0EP88_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGA+KEMNGKYVGNRPIKLRKSNWKERTD +AL
Sbjct: 105 MARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDAL 164

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R KNH QKK K+PKKSILHK
Sbjct: 165 ERQKNHIQKKPKMPKKSILHK 185

[Close]

BLAST of MELO3C008710 vs. TrEMBL
Match: A0A0D3H3D7_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGA+KEMNGKYVGNRPIKLRKSNWKERTD +AL
Sbjct: 155 MARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDAL 214

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R KNH QKK K+PKKSILHK
Sbjct: 215 ERQKNHIQKKPKMPKKSILHK 235

[Close]

BLAST of MELO3C008710 vs. TAIR10
Match: AT3G04500.1 (AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-32
Identity = 65/81 (80.25%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MA+V+RDKRTGKTKGYGFVSF NP DLA ALKEMNGKYVGNRPIKLRKS+WKERTD EA 
Sbjct: 165 MAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAA 224

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R K+H+ KK K  KKSILHK
Sbjct: 225 ERQKHHSNKKQKTVKKSILHK 245

[Close]

BLAST of MELO3C008710 vs. TAIR10
Match: AT1G54080.2 (AT1G54080.2 oligouridylate-binding protein 1A)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-08
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALG 61
           ARV+ D++TG+++G+GFVSF N  D   A+ EMNGK+V +R I   + NW   T     G
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI---RCNW--ATKGATFG 240

Query: 62  RHKNHTQKKS 72
             K+ +  KS
Sbjct: 241 EDKHSSDGKS 245

[Close]

BLAST of MELO3C008710 vs. TAIR10
Match: AT3G14100.1 (AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNW 52
           ARV+ D++TG+++G+GFVSF N  D   A+ EMNGK++ +R I   + NW
Sbjct: 173 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI---RCNW 219

[Close]

BLAST of MELO3C008710 vs. TAIR10
Match: AT4G27000.1 (AT4G27000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-07
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIK 46
           A+VV D+ TG++KGYGFV F++ ++   A+ EMNG+Y  +RP++
Sbjct: 203 AKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246

HSP 2 Score: 33.5 bits (75), Expect = 7.5e-02
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNG 37
           A+V+R+K+ G ++GYGF+ F N       L+  NG
Sbjct: 109 AKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNG 143

[Close]

BLAST of MELO3C008710 vs. TAIR10
Match: AT1G17370.1 (AT1G17370.1 oligouridylate binding protein 1B)

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-07
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 2   ARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALG 61
           ARV+ D++TG+++G+GFVSF N  D   A+ E+ GK++G+R I   + NW   T     G
Sbjct: 168 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQI---RCNW--ATKGATSG 227

Query: 62  RHKNHTQKKS 72
             K  +  KS
Sbjct: 228 EDKQSSDSKS 232

[Close]

BLAST of MELO3C008710 vs. NCBI nr
Match: gi|449470234|ref|XP_004152823.1| (PREDICTED: RNA-binding protein 42 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL
Sbjct: 173 MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 232

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
           GRHKNHTQKKSKLPKKSILHK
Sbjct: 233 GRHKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of MELO3C008710 vs. NCBI nr
Match: gi|659082432|ref|XP_008441837.1| (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.5e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL
Sbjct: 173 MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 232

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
           GRHKNHTQKKSKLPKKSILHK
Sbjct: 233 GRHKNHTQKKSKLPKKSILHK 253

[Close]

BLAST of MELO3C008710 vs. NCBI nr
Match: gi|937931851|dbj|BAT06767.1| (Os08g0567200 [Oryza sativa Japonica Group])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGA+KEMNGKYVGNRPIKLRKSNWKERTD +AL
Sbjct: 119 MARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDAL 178

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R KNH QKK K+PKKSILHK
Sbjct: 179 ERQKNHIQKKPKMPKKSILHK 199

[Close]

BLAST of MELO3C008710 vs. NCBI nr
Match: gi|1002290990|ref|XP_015649833.1| (PREDICTED: RNA-binding protein 42 [Oryza sativa Japonica Group])

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-34
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MARVVRDKRTGKTKGYGFVSFSNPTDLAGA+KEMNGKYVGNRPIKLRKSNWKERTD +AL
Sbjct: 155 MARVVRDKRTGKTKGYGFVSFSNPTDLAGAIKEMNGKYVGNRPIKLRKSNWKERTDVDAL 214

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R KNH QKK K+PKKSILHK
Sbjct: 215 ERQKNHIQKKPKMPKKSILHK 235

[Close]

BLAST of MELO3C008710 vs. NCBI nr
Match: gi|976912123|gb|KVH98718.1| (Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus])

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-34
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 1   MARVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEAL 60
           MA+VVRDKRTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTD EAL
Sbjct: 165 MAKVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDVEAL 224

Query: 61  GRHKNHTQKKSKLPKKSILHK 82
            R K HTQ+K+KLPKKS+LHK
Sbjct: 225 ERQKKHTQRKTKLPKKSVLHK 245

The following BLAST results are available for this feature:

BLAST of MELO3C008710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBM42_XENTR	5.4e-18	75.47	RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1	[more]
RBM42_DANRE	7.0e-18	65.22	RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2	[more]
RBM42_RAT	7.0e-18	75.47	RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1	[more]
RBM42_MOUSE	7.0e-18	75.47	RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1	[more]
RBM42_HUMAN	7.0e-18	75.47	RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1	[more]

BLAST of MELO3C008710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH39_CUCSA	1.7e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1	[more]
A0A0E0QMK2_ORYRU	1.3e-34	90.12	Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1	[more]
B8B9N2_ORYSI	1.3e-34	90.12	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30332 PE=4...	[more]
A0A0E0EP88_9ORYZ	1.3e-34	90.12	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
A0A0D3H3D7_9ORYZ	1.3e-34	90.12	Uncharacterized protein OS=Oryza barthii PE=4 SV=1	[more]

BLAST of MELO3C008710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04500.1	1.1e-32	80.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G54080.2	1.8e-08	42.86	oligouridylate-binding protein 1A	[more]
AT3G14100.1	1.2e-07	48.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G27000.1	2.0e-07	47.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	2.0e-07	40.00	oligouridylate binding protein 1B	[more]

BLAST of MELO3C008710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470234\|ref\|XP_004152823.1\|	2.5e-39	100.00	PREDICTED: RNA-binding protein 42 [Cucumis sativus]	[more]
gi\|659082432\|ref\|XP_008441837.1\|	2.5e-39	100.00	PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo]	[more]
gi\|937931851\|dbj\|BAT06767.1\|	1.8e-34	90.12	Os08g0567200 [Oryza sativa Japonica Group]	[more]
gi\|1002290990\|ref\|XP_015649833.1\|	1.8e-34	90.12	PREDICTED: RNA-binding protein 42 [Oryza sativa Japonica Group]	[more]
gi\|976912123\|gb\|KVH98718.1\|	5.4e-34	88.89	Nucleotide-binding, alpha-beta plait [Cynara cardunculus var. scolymus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008710T1	MELO3C008710T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..45 score: 2.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..51 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 2..56 score: 5.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 2..56 score: 2.96
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 2..54 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008710	Cla007918	Watermelon (97103) v1	mewmB426
MELO3C008710	Bhi06G000975	Wax gourd	mewgoB468
MELO3C008710	CSPI02G07290	Wild cucumber (PI 183967)	cpimeB139
MELO3C008710	Cucsa.178480	Cucumber (Gy14) v1	cgymeB320
MELO3C008710	CmaCh05G007620	Cucurbita maxima (Rimu)	cmameB737
MELO3C008710	CmaCh12G009600	Cucurbita maxima (Rimu)	cmameB175
MELO3C008710	CmoCh05G008030	Cucurbita moschata (Rifu)	cmomeB725
MELO3C008710	CmoCh12G009630	Cucurbita moschata (Rifu)	cmomeB164
MELO3C008710	Cp4.1LG11g06850	Cucurbita pepo (Zucchini)	cpemeB102
MELO3C008710	Cp4.1LG07g07960	Cucurbita pepo (Zucchini)	cpemeB777
MELO3C008710	CsGy2G007510	Cucumber (Gy14) v2	cgybmeB120
MELO3C008710	Carg19845	Silver-seed gourd	carmeB0170
MELO3C008710	Carg26545	Silver-seed gourd	carmeB0712
MELO3C008710	CsaV3_2G009740	Cucumber (Chinese Long) v3	cucmeB141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008710	Watermelon (97103) v2	mewmbB369
MELO3C008710	Wax gourd	mewgoB456
MELO3C008710	Cucumber (Chinese Long) v2	cumeB133
MELO3C008710	Watermelon (Charleston Gray)	mewcgB367
MELO3C008710	Bottle gourd (USVL1VR-Ls)	lsimeB115