Carg19845 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19845
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein 42-like
Location	Cucurbita_argyrosperma_scaffold_067 : 546173 .. 553170 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGCGCTACCCGGCCAAGCTTGTGACAATCGGAGCATTTTCAAGCCCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGGCTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGACTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTATATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGTCGCATAACATGCATACGATTTTAATTTTTAGTGCGGAGTTCTGGTTTTATTCTATTTTTGCTATGGTTTAGGGAAAATTGTTATGGAGCTTGACGTTTCTGATGGATAAGGGAATATTTTTTGGTTCAATTTATGGCTTTAGCATGCTTGTAACATTTCCCCCCCTGTTTTACCTACTATGAACAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAGTATGCATTATTTACGTTCTTTAATTTCACGTATTTGCAATCATTGGGCTTGCTGTGATCTCTAGGAATAATTTTAATTGTTATGGGCCTCTGATATCAGCTTGAACCGATGGATGTTTCTTTTAGTTACTACACGTATTACATAGCAACCTCGGCAAATTTCAAGCAAGGACTGGATACTTGGCTTTGGACTTAAAATAATTTCTGTAATGCACCACGAGTGGTTTGGGTTTTCCTTTATGTAATTTTACGAATCAATAAAATAGTTTCTTGTTCCTCTCTGGAGAAAAGTATAACAAAATTAAATACAATAAAACAAAAGATCTTTTTGGCTACATGACTTTGAATATTTCTTTAGGAGGTAATGAGCCTGGAGAAATAAGGTTTTTGCTGTTATAATGGAAATAAGGGAGATAGATGGTTTTCCAAGAAGCCTAAGGAGCCAATGGAAAAGAATAAAGAGGCTGAAACAAAGGTTTGAAGAATTCACCTCTAAGATAATTGGTGATGGGAGGGACATCGAATTGCAAAGGTAGCAAGGCTTATGTTTATACCTAGGAAGTATAAACACACCATTTTTTTTTTTGCAGAGTCTCGGACATCTATCATACATGGGCATGCTCGAACACACACCTGACATTTGAAAAAGTCTAATTGATAAGTGCTATAGATGTTGGATTTACAAAACTAGAGGTACTTCTAGGATCTTGCAAATATTCACAAATAAGGCTAACTTATCAAATAGATTCCAACCAAGAGCTTAGCTAGAAGATGAAACTCTTGGATCTAACATAGAATCTAGGATGGTTACTCCTAGACGACTCACCCTATAATTAGATTGATTGAAGCTAATCCAAAGAATTGATTGAACTTCAAACACAAAGCAAGATTTGAAAAAACCAGCACCAAGATGGATTTGAGAAACACAAGTTTCTTTGTTTGGTTGCAAAAAAGTCTTCCAAATACAAAGTATTACATGCCCTTAAATAAGCCCAAATGGTCGTTCAAGTTCCCAAGAATCAAGTCCTTCAAATACAAATAAATGATAATTGGAGAAAATAAAACCTAGGAAATGAAGCTCAATTGCACAACAATTGAGAAGTCTAAATGTGGAACAAAAAAATGTAGAAATGTTTTAAATTTTCTTCAATATCTATGGTAGGATCCACTTGACTTGATGAGAACGTTTGACAAGTTTTAACATCATAAACTCTCAGGAGGTGCAATTTGGAAAGGCATCTCTTCACAGGTTCTACGTAGTTTTTTTGTCCATCGTGCCATCTTCCAAACTACACTACTTTTGCATGCCATCTTTACTTCATTCACTTTTTGACTTGTTGAAATAACGTTATGAAGAAATCAGGGTTCAACATTCGTTCTCTCCTTGTGCATTAGCTAGTTTTTGAAGATACAATGTAGAAGCCTTTTGATTTTTTTTTTTTTTTTTTTTTGCCTTGTTCATTGTAATAGCTCCTTCAGGTACAAGTAATGGATCGAAGGTTGGATTCACCTCACCAATTATTCAATATTTTAATTTCTTGATATAGTTCGAAAAAGAAAGTATAACAAAGTACAACATTTGTTGGATTTGAAAGCCCAATACCCACTGGAAAATGAAGGTGCCCACTTAAAAAAAATACCTAAATTTAATATGTCAAAAATAAGAGAGCAATTCCACTTGTTTGATCCTATTTTCAAGTTTATTCCATAAACCTTATTGAAACTCAATCGTTTTTGGCTCAGTGTGGGAGACCCCGATTATTGGGGGGGAGGGGGTGGACTAGTTTCACAGTCATCATCTCTCTATTTTTTAATGCCATAGGAAGGATTTATTCATGATTTCTTTTGGAGAGGAGTAGCGAAAGAATATGAAAACATTCTAGTAACTTGGAAAAACATCAACCTACTTGCGAGATGGGGGTGGAAATTCATGGAAGAAAATAATGCCCTATGGAAGGATGTAATTGCCAACAATTACTCTGGAGTAATAGATTCCAAAGCCGAATAGCCATGGGCCAAGCAAAGGTCCTTGGAAGGAGGTAATTGCCAACAATTATGGTTGGGTTGTTCCTTTTAGGAATTTGACCGTTGATGAGATTCTTGAGTGGATCAAGCTCTACAGCCTTGTTTATATACAATGACCTTCGAATGTAGAAGATTCTCTCTCTTGGACCCTCAAAAGAGATGGTTGATTTTCGGTTAATTCCTTAACTTTTGAGCTAAGCACTCATCAGGCCCCGTCAATGTTAATCCATCAAAGGTGATTTGGGTGGCTAAAGTCCCTAAGAGGAAGTGAAAGCCTTCATATGGGTCTTTGTCTGAAGGAATTTAAACACAAGGGATGTCTACAAAGAAGACGACTGAATAATCCGTGCCCCCAAATTGGTGCATGATGTGCAGATCAAATGAAGAAAATCGGCATCATCTTTTCTTCCTGTTCTCTTGGGCAAACTCCTTAGGGTTAGATTATTGAATTTTTTGGGGAGCTGGTGTGTCCTGAAAGAAATGATGGGGCCTGTTTTTGCTTATTTTTGGAACTCCTTTCGAGGATAAAGGTCGTATTTTATGGTTAATGGTGATTTTGTGGAAACTGTGGCATGAGAGGAACTAGAAGGGCTTTGTAGAGAAGACGACTAACCTTTACAAGCTTTGTGACCCCATCAAACTCTTTGCATCCATCTGTGTCTCTTTCAAAGTCTTTTTGTAATTATGATCTTGTGCATATTTCAGCTGATTGGGAGTCCTTTTTTGTGACCCTTTGGCCTAGTAGGGATAATTCATCTACCTTTTGTACTACTTCCTCCCAATCAATATATTTTTTGTTTCTTATTAAAAAAAGGAGAAGAAAATACACACTTATTGGATAATGAATATTATTGGTTGTCAATCACTGTTTCGATGAATTTAATTTTGTTTTGATGTTGACTCTTAGATATTATATTTACTTTTATATTATTAAGAATTTTGAAATATTAGTGGTCATAGGCTTGTGTGTATGCACATAATTACAGAGAAAAAAAAAAACTATCATAACCCCAATATATCATGTCCTAGTTTTTTATCATGTTGCCGTGTTAGTCATTTTATTGGTGACATATTTCATGTTTCTTAAATAGTTACTGATCTGCCGTACTCTTGATTCTTATATTTTTCCACCGATTTTGATGGATTTCCTTTTCCTGTTGGCTTTGTAGAAATAATGACTACTATAGAGTAGAAATTGAATTAGTGCATGTAATGTTCCTATGCTGTACTCTCTCTAACTTTTTAAATTTGTATCTATTGCTTTCATCTTTAGCTGGAAGTATCTCTTACTGAGGAAAATTTTCTGTTGTTGCAGATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTAAGTTTATTGAGTCCAATATTCTACCTAATTCATTTTTATTTTCAATTTTTGTTCTTGGCATTCTGCATGATGGTTAGTTTCCTTGAAAGTGTTTGGTCCGTTTAAAAGGTCGCAATGCATCTATAGGTACGTCTTGTTTGTACATTTACATGTGATTCTGATTGCATTTGAGGCTTCTGATATGTCCACAGGAATCTGTTCCTTGAATTGTAATATATTTTTTATATTTTTTAAGGTTTAAGTTCTATTTTGGTCGAAAAAGCTTTTATATTATTTTGTTTGGCTTCTAAACTTGTAAATATTCTGTTTTGGTCACTAAGCTATCAACTTTATCCCTGAAACTATGCATAATAAACTAATTTAGTCATTTCTGTTAATTCTTTTTGTTGATCATTTGGAGTTTGCTAACCTGCTTTGTGTAACCCCAAAAACATACCTTGTAGACAGACACTCACCAGATTTAGGAACAAAAGATGTGTCGAATCAAGTTTCTGTTAAATGATTTTTATAAATTAAAGCAAAACTAATGACTGAAAATATATTTTTTTTGACGGACAAAAATAGAATCATCTGGAAGACTAAAATGAAAAAAGTATAATATCTCCAGAAATAAAATAGTATTAAAACCTGTTTTTATGTTTCTTAAAAATTATTTATGAGGTTAAGAATTTTCTTTAAGAAAGATGCGATCATCTGATTGGGAGATATGCAGCTGGAACCTCTTTATGGAGCTTGTATCCCTTAGAATTTACCAAGTTCATAGACTAGCTTGAGTTGTAACATGGTTGGGTCATTTAAACTTGCGAGAGACAGGTTAGCTCTCGAGCTTCTAAAAGTGGTTATTCTTTTCCTTGGTATTTTCACTCTCTTACTGCTTGTGGGGGTATGAGGAAAGTCCCTTAAAATTTTGTGCACGAAACTATCCATGAAATTTTCAACAGAGGGACTTGAAGACTGTGTGAGCTCTTGACTTTTAGTAATGATTGGAGATATTTTTCTTTTGGTATTCACTCACGAATCTTGAAGATTCACTGTTAAAGTGATCGGCCCTGTGATTTCCCTCCTTTGTGGTCATTGTATAGTCATGCCATTAAACATAGGCTTTACAACCATTTCATCTGGTATTGGGTCTTGTCATGGAATATTTATTTTATTGGTGTTATTGTTGCTCATGCATATTTTATGGTTGAACTCGTAATTTAATTCTCACCAACATTTGTAGTTTTTGAACCATTGTCAACTGCAAGGACATTGCCCAATTGTTTATAAGGATTTCTATGGCATAATTTTATGGAAGTGGTTTGGACCAATTGATGCACTTTTATAAGAAACAATCTCAACTATCTTGAAAAATATACTATTTCATGACTTTGCGGATTGACCTAAAATTTTTTGATACTCCATTTATGGTTTATTTTCTACTTACCAATGGATCTATATGCTTATAATTTTGTTTAGGTTGTTAGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGTAATATGCTGATTTTAGTTTTATATGGGTTCTGCAGTTCTTTCATCTCTCTGTTGGACCTGTGCTTCCTGTTCAATGCTCATGACATGTACTGTGTAATATAATAAAACCTTCCTCGTTGGTGGAACGCTATAGGATAACGAGTTTAATTAGGTTGTCATTTAACTTTTTCTTTTTACGAGAAACAAATTTTTTTACTGAAATAATGAAAATGACTAATGCTCAAAAGTTACAATTCTTTTTTGTTTTACTTCTCTCTCTCAAAAACATTTTGAAGAAAGTTGTAAGAAATTAAAATGTAGGTTTTGAGAAAACAAGTGTTTTTCTGCATTCACAATTTGGTCAGGATTTTGAAGTATTTCTAAAATGTACGATACCGAATTACTTTCTAAAAGAACTAAACAAATTAAAGGATAATCTTTAGATAGACCCAATTTTTTGTTCTTATGATCGCCTCCTGTGGAGGAAATTTCCTTTGAACTAGACCCATCTGTATGAACTAGCGTGGTCAAGAATCTTATGGTCTAATCCTCAAGCTTATGTGTCTTCTAGGGTGTGTGGTAATGGTTGGGTAGTTTGACATTCTTAAATGCCTTGTGTTCTCTTCAAAATCTCTGAAACTATTCTTATGTGCTTAGACCCTTCTTGATTGCAGGCAAGTATGTCGGAAATAGGCCAATAAAATTAAGAAAGAGCAATTGGAAGGAAAGGACAGACTATGATGCCCTGGAAAGACACAAGGTAAATAACGTTCGGTGTTCGTATGCACCGTTACTTCTTGCTTATTTTTAAAGTTCGACGTTTCAGTTTTTTTGATAAACTAATTTGAAGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATATCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTAAATGAAGTGATTGTGCACTAGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATAGAAATCAACAGTCTTTCACTGTTCTTGACCATTGATCTGACATTACATCTTATTCAAACGACGCTTAAATGTGATTCAGAAAGAAGAACGATTCCCCTTTGTTTGAGCAGAAGAATATAATATCCTCAACGAATTGAAGATGAGATAAATACAACTCATCT

mRNA sequence

AGTGCGCTACCCGGCCAAGCTTGTGACAATCGGAGCATTTTCAAGCCCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGGCTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGACTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTATATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCAATAAAATTAAGAAAGAGCAATTGGAAGGAAAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATATCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTAAATGAAGTGATTGTGCACTAGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATAGAAATCAACAGTCTTTCACTGTTCTTGACCATTGATCTGACATTACATCTTATTCAAACGACGCTTAAATGTGATTCAGAAAGAAGAACGATTCCCCTTTGTTTGAGCAGAAGAATATAATATCCTCAACGAATTGAAGATGAGATAAATACAACTCATCT

Coding sequence (CDS)

ATGGCGGGACCTTCCTCGGCTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGACTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTATATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTAGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCAATAAAATTAAGAAAGAGCAATTGGAAGGAAAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAG

Protein sequence

MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSILHK

Homology

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BLAST of Carg19845 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 441.4 bits (1134), Expect = 2.0e-120
Identity = 249/251 (99.20%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGXXXXXX 60
           MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQ+APAPAGPQYPSPYVAAP XXXXXX
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Carg19845 vs. NCBI nr
Match: XP_022997003.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 441.0 bits (1133), Expect = 2.6e-120
Identity = 243/251 (96.81%), Postives = 244/251 (97.21%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGXXXXXX 60
           MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQ+A APAGPQYPSPYVAAPG   XXX
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAXXX 60

Query: 61  XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           XXXXXXXXXXXX   LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  XXXXXXXXXXXXAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Carg19845 vs. NCBI nr
Match: XP_022929768.1 (RNA-binding protein 42-like [Cucurbita moschata])

HSP 1 Score: 436.8 bits (1122), Expect = 5.0e-119
Identity = 247/251 (98.41%), Postives = 248/251 (98.80%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGXXXXXX 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQ+APAPAGPQYPSPYVAA  XXXXXX
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  XXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]

BLAST of Carg19845 vs. NCBI nr
Match: XP_022965496.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104
Identity = 227/255 (89.02%), Postives = 231/255 (90.59%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQ----YPSPYVAAPGXX 60
           MAGP SAPSA SSSSG+QFTYSNGSYFPLPFHLQQ+APA   PQ              XX
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120
           XXXXXXXXXXXXXXXXX  LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET
Sbjct: 61  XXXXXXXXXXXXXXXXXYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAET 120

Query: 121 KKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180
           KKKAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR
Sbjct: 121 KKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVR 180

Query: 181 DKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNH 240
           DKRTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL R+KNH
Sbjct: 181 DKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNH 240

Query: 241 TQKKSKLPKKSILHK 252
           TQKKSKLPKKSILHK
Sbjct: 241 TQKKSKLPKKSILHK 255

[Close]

BLAST of Carg19845 vs. NCBI nr
Match: XP_022937609.1 (RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 226/253 (89.33%), Postives = 230/253 (90.91%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGP--QYPSPYVAAPGXXXX 60
           MAGP SAPSA SSSSG+QFTYSNGSYFPLPFHLQQ+APA   P             XXXX
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           XXXXXXXXXXXXXXXXX  QYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL R+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Carg19845 vs. TAIR10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 305.8 bits (782), Expect = 2.4e-83
Identity = 151/173 (87.28%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 79  YQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEW 138
           YQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+AIPRKAAGQSWEDPTL+EW
Sbjct: 73  YQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQSWEDPTLSEW 132

Query: 139 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLA 198
           PENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRTGKTKGYGFVSF NP DLA
Sbjct: 133 PENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLA 192

Query: 199 AALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSILHK 252
           AALKEMNGKYVGNRPIKLRKS+WKERTD +A ER K+H+ KK K  KKSILHK
Sbjct: 193 AALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSILHK 245

[Close]

BLAST of Carg19845 vs. TAIR10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           EMNGK++ +R I   + NW
Sbjct: 204 EMNGKWLSSRQI---RCNW 219

[Close]

BLAST of Carg19845 vs. TAIR10
Match: AT1G17370.1 (oligouridylate binding protein 1B)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           E+ GK++G+R I   + NW
Sbjct: 199 EITGKWLGSRQI---RCNW 214

[Close]

BLAST of Carg19845 vs. TAIR10
Match: AT3G19130.1 (RNA-binding protein 47B)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 142 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 201
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 202 LKEMNGKYVGNRPIKL 217
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

[Close]

BLAST of Carg19845 vs. TAIR10
Match: AT1G54080.2 (oligouridylate-binding protein 1A)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-12
Identity = 38/97 (39.18%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPS----FNMARVVRDKRTGKTKGYGFVSFSNPTDLA 202
           + +F GDL  EV D  L  +FS F S    +  ARV+ D++TG+++G+GFVSF N  D  
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207

Query: 203 AALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKN 236
            A+ EMNGK+V +R I   + NW  +      ++H +
Sbjct: 208 TAINEMNGKWVSSRQI---RCNWATKGATFGEDKHSS 241

[Close]

BLAST of Carg19845 vs. Swiss-Prot
Match: sp|Q0P5L0|RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.7e-41
Identity = 86/143 (60.14%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 97  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVND 156
           ALE V   L+  + + K E  K+ I R AAG SWEDP+L EW  +D+R+FCGDLGNEVND
Sbjct: 305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 364

Query: 157 DVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKL 216
           D+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKL
Sbjct: 365 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 424

Query: 217 RKSNWKERTDYDALERHKNHTQK 240
           RKS WK+R + D + + +   +K
Sbjct: 425 RKSMWKDR-NLDVVRKKQKEKKK 444

[Close]

BLAST of Carg19845 vs. Swiss-Prot
Match: sp|Q9BTD8|RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-41
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 97  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVND 156
           ALE V   L   + + K E  K+ I R AAG SWEDP+L EW  +D+R+FCGDLGNEVND
Sbjct: 337 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 396

Query: 157 DVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKL 216
           D+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKL
Sbjct: 397 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 456

Query: 217 RKSNWKERTDYDALERHKNHTQK 240
           RKS WK+R + D + + +   +K
Sbjct: 457 RKSMWKDR-NLDVVRKKQKEKKK 476

[Close]

BLAST of Carg19845 vs. Swiss-Prot
Match: sp|Q91V81|RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-41
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 97  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVND 156
           ALE V   L   + + K E  K+ I R AAG SWEDP+L EW  +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 390

Query: 157 DVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKL 216
           D+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKL
Sbjct: 391 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 450

Query: 217 RKSNWKERTDYDALERHKNHTQK 240
           RKS WK+R + D + + +   +K
Sbjct: 451 RKSMWKDR-NLDVVRKKQKEKKK 470

[Close]

BLAST of Carg19845 vs. Swiss-Prot
Match: sp|Q6AXT7|RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-41
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 97  ALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVND 156
           ALE V   L   + + K E  K+ I R AAG SWEDP+L EW  +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 390

Query: 157 DVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKL 216
           D+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+RPIKL
Sbjct: 391 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 450

Query: 217 RKSNWKERTDYDALERHKNHTQK 240
           RKS WK+R + D + + +   +K
Sbjct: 451 RKSMWKDR-NLDVVRKKQKEKKK 470

[Close]

BLAST of Carg19845 vs. Swiss-Prot
Match: sp|Q66KL9|RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-40
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 110 IEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKA 169
           +E   E KKK  P K       AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++A
Sbjct: 253 LEPVQEDKKKTKPEKLKRCIRTAAGTSWEDQSLLEWESDDFRIFCGDLGNEVNDDILARA 312

Query: 170 FSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWK 229
           FSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKLRKS WK
Sbjct: 313 FSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIKLRKSQWK 372

Query: 230 ERTDYDALERHKNHTQK 240
           +R + D + + +   +K
Sbjct: 373 DR-NMDVVRKKQREKKK 388

[Close]

BLAST of Carg19845 vs. TrEMBL
Match: tr|F6H614|F6H614_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0036g00630 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.0e-96
Identity = 206/242 (85.12%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 19  FTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVA---------APGXXXXXXXXXXXXXXX 78
           FTYSN SYFPLPFHLQQ+ P  A  QYP PYVA            XXXXXXXXXXXXXXX
Sbjct: 16  FTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPXXXXXXXXXXXXXXXXXXXXXXXXXX 75

Query: 79  XXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 138
           XX    LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQ+
Sbjct: 76  XXGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQT 135

Query: 139 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFV 198
           WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA+VVRDKRTGKT+GYGFV
Sbjct: 136 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTRGYGFV 195

Query: 199 SFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSIL 252
           SFSNP DLAAALKEMNGKYVGNRPIKLRKSNW+ERTD++ALER KNH QKK KL KKS+L
Sbjct: 196 SFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKNHIQKKPKLSKKSVL 255

[Close]

BLAST of Carg19845 vs. TrEMBL
Match: tr|A0A2C9VAX4|A0A2C9VAX4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G148000 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 9.6e-95
Identity = 191/257 (74.32%), Postives = 206/257 (80.16%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYS------NGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPG 60
           M+ P S+ + PS+SSGSQFTY+      N SYFP+PFHLQQ+           PYVA P 
Sbjct: 1   MSIPPSSTTTPSASSGSQFTYTAATATPNTSYFPMPFHLQQSV---------QPYVAPPA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKA 120
                                LPQ+QQAQQLFQRDAQTITPEALE VKAALASSEIEHK 
Sbjct: 61  ---VQPVGASVYTAPVGPVYSLPQFQQAQQLFQRDAQTITPEALEGVKAALASSEIEHKQ 120

Query: 121 ETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARV 180
           ETKKKAIPRKAAGQ+WEDPTL++WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARV
Sbjct: 121 ETKKKAIPRKAAGQAWEDPTLSDWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARV 180

Query: 181 VRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHK 240
           VRDKRTGKTKGYGFVSFSNP+DLAAALKEMNGKYVGNRPIKLRKSNWKERTD+DALER K
Sbjct: 181 VRDKRTGKTKGYGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDHDALERQK 240

Query: 241 NHTQKKSKLPKKSILHK 252
           NH QKK K P+KS+LHK
Sbjct: 241 NHHQKKPKPPRKSVLHK 245

[Close]

BLAST of Carg19845 vs. TrEMBL
Match: tr|B9I5N8|B9I5N8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G046900v3 PE=4 SV=2)

HSP 1 Score: 355.1 bits (910), Expect = 1.3e-94
Identity = 187/250 (74.80%), Postives = 200/250 (80.00%), Query Frame = 0


Query: 11  PSSSSGSQFTY---------SNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGXXXXXXX 70
           PSSS+  QFTY         +NG+YFP PFHLQQ+ P      YP PYV +P        
Sbjct: 5   PSSSTSQQFTYAASATSATAANGTYFPTPFHLQQSDP------YPKPYVTSP----PTVM 64

Query: 71  XXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAI 130
                         LPQYQQAQQLFQRDAQTITPEALE VKAALASSEIEHKAETKKKA+
Sbjct: 65  APVYPPAPIGPVYSLPQYQQAQQLFQRDAQTITPEALEGVKAALASSEIEHKAETKKKAV 124

Query: 131 PRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTG 190
           PRKAAG +WEDPTLAEWPENDYR+FCGDLGNEVNDDVLSKAFSRFPSFN+ARVVRDKR+G
Sbjct: 125 PRKAAGLTWEDPTLAEWPENDYRVFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRSG 184

Query: 191 KTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKS 250
           KTKGYGFVSF+NPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDY A++RHKNH  KK 
Sbjct: 185 KTKGYGFVSFANPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYGAVDRHKNHNHKKP 244

Query: 251 KLPKKSILHK 252
           KL KKSILHK
Sbjct: 245 KLSKKSILHK 244

[Close]

BLAST of Carg19845 vs. TrEMBL
Match: tr|A0A0A0LH39|A0A0A0LH39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 8.1e-94
Identity = 212/253 (83.79%), Postives = 213/253 (84.19%), Query Frame = 0


Query: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHL--QQTAPAPAGPQYPSPYVAAPGXXXX 60
           MAGPSSA             YSNGSYFPLPFHL                       XXXX
Sbjct: 1   MAGPSSAXXXXXXXXXXXXXYSNGSYFPLPFHLXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           XXXXXXXXXXXXXXX  LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  XXXXXXXXXXXXXXXYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of Carg19845 vs. TrEMBL
Match: tr|A0A200PVZ0|A0A200PVZ0_9MAGN (RNA recognition motif domain OS=Macleaya cordata OX=56857 GN=BVC80_9099g187 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.4e-93
Identity = 188/259 (72.59%), Postives = 202/259 (77.99%), Query Frame = 0


Query: 5   SSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQT------------APAPAGPQYPSPYVAA 64
           S+ P++ S  S SQFTYSNGSYFPLPFHLQQ+             P PA P    P   +
Sbjct: 2   SNDPASNSHPSSSQFTYSNGSYFPLPFHLQQSDSMSVYQFPNSHIPGPAMPVQIPPPAPS 61

Query: 65  PGXXXXXXXXXXXXXXXXXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEH 124
                                  LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEH
Sbjct: 62  KVMTAPMLPSVYAAPAPAASAYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEH 121

Query: 125 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 184
           KAETKK+AIPRKAAGQ+WEDPTLAEWPENDYRLFCGDLGNEVND+VLSKAFSRFPSFNMA
Sbjct: 122 KAETKKRAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDEVLSKAFSRFPSFNMA 181

Query: 185 RVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALER 244
           RVVRDKRTGKT+G+GFVSF NP DLAAALKEMNGKYVGNRPIKLRKS+WKERTD +ALE+
Sbjct: 182 RVVRDKRTGKTRGFGFVSFGNPLDLAAALKEMNGKYVGNRPIKLRKSSWKERTDMEALEK 241

Query: 245 HKNHTQKKSKLPKKSILHK 252
            KNH  KK KLPKKS+LHK
Sbjct: 242 QKNHAHKKQKLPKKSVLHK 260

The following BLAST results are available for this feature:

BLAST of Carg19845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545858.1	2.0e-120	99.20	RNA-binding protein 42-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997003.1	2.6e-120	96.81	RNA-binding protein 42-like [Cucurbita maxima]	[more]
XP_022929768.1	5.0e-119	98.41	RNA-binding protein 42-like [Cucurbita moschata]	[more]
XP_022965496.1	1.2e-104	89.02	RNA-binding protein 42-like [Cucurbita maxima]	[more]
XP_022937609.1	1.1e-102	89.33	RNA-binding protein 42-like [Cucurbita moschata] >XP_023538266.1 RNA-binding pro...	[more]

BLAST of Carg19845 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04500.1	2.4e-83	87.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G14100.1	4.0e-14	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	1.5e-13	43.04	oligouridylate binding protein 1B	[more]
AT3G19130.1	3.4e-13	46.05	RNA-binding protein 47B	[more]
AT1G54080.2	1.3e-12	39.18	oligouridylate-binding protein 1A	[more]

BLAST of Carg19845 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q0P5L0\|RBM42_BOVIN	3.7e-41	60.14	RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1	[more]
sp\|Q9BTD8\|RBM42_HUMAN	4.8e-41	60.14	RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1	[more]
sp\|Q91V81\|RBM42_MOUSE	4.8e-41	60.14	RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=1	[more]
sp\|Q6AXT7\|RBM42_RAT	4.8e-41	60.14	RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=1	[more]
sp\|Q66KL9\|RBM42_XENTR	2.4e-40	59.12	RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1	[more]

BLAST of Carg19845 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|F6H614\|F6H614_VITVI	1.0e-96	85.12	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0036g00630 PE=4 SV=...	[more]
tr\|A0A2C9VAX4\|A0A2C9VAX4_MANES	9.6e-95	74.32	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G148000 PE=4 SV=...	[more]
tr\|B9I5N8\|B9I5N8_POPTR	1.3e-94	74.80	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G046900v3 PE=...	[more]
tr\|A0A0A0LH39\|A0A0A0LH39_CUCSA	8.1e-94	83.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1	[more]
tr\|A0A200PVZ0\|A0A200PVZ0_9MAGN	1.4e-93	72.59	RNA recognition motif domain OS=Macleaya cordata OX=56857 GN=BVC80_9099g187 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034215	RBM42_RRM
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19845-RA	Carg19845-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 144..217 e-value: 5.1E-21 score: 85.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 145..215 e-value: 5.8E-19 score: 67.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 143..221 score: 16.347
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 74..239 e-value: 1.2E-23 score: 85.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..251
None	No IPR available	PANTHER	PTHR44834	FAMILY NOT NAMED	coord: 6..251
None	No IPR available	PANTHER	PTHR44834:SF2	SUBFAMILY NOT NAMED	coord: 6..251
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 137..219 e-value: 1.13954E-57 score: 179.726
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 126..223

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19845	Csa2G075290	Cucumber (Chinese Long) v2	carcuB0184
Carg19845	MELO3C008710	Melon (DHL92) v3.5.1	carmeB0170
Carg19845	CSPI02G07290	Wild cucumber (PI 183967)	carcpiB0191
Carg19845	Cucsa.178480	Cucumber (Gy14) v1	carcgyB0204
Carg19845	CmaCh12G009600	Cucurbita maxima (Rimu)	carcmaB0220
Carg19845	CmaCh05G007620	Cucurbita maxima (Rimu)	carcmaB0221
Carg19845	CmoCh05G008030	Cucurbita moschata (Rifu)	carcmoB0232
Carg19845	CmoCh12G009630	Cucurbita moschata (Rifu)	carcmoB0231
Carg19845	Lsi11G008800	Bottle gourd (USVL1VR-Ls)	carlsiB148
Carg19845	Cp4.1LG07g07960	Cucurbita pepo (Zucchini)	carcpeB0238
Carg19845	Cp4.1LG11g06850	Cucurbita pepo (Zucchini)	carcpeB0237
Carg19845	CsGy2G007510	Cucumber (Gy14) v2	carcgybB0179
Carg19845	CsaV3_2G009740	Cucumber (Chinese Long) v3	carcucB0191
Carg19845	Bhi06G000975	Wax gourd	carwgoB0215

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19845	Carg26545	Silver-seed gourd	carcarB202

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19845	Melon (DHL92) v3.6.1	carmedB0172
Carg19845	Watermelon (Charleston Gray)	carwcgB0158
Carg19845	Watermelon (97103) v1	carwmB0155
Carg19845	Watermelon (97103) v2	carwmbB0172
Carg19845	Wax gourd	carwgoB0214