CmoCh05G008030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding 42
Location	Cmo_Chr05 : 4715788 .. 4723574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCCAAGCCCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGACTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGTCGCATAACATGCATACGATTTTAATTTTTACTGCGGAGTTCTGGTTTTGTTCTATTTTTGCTATGGTTTAGGGAAAATTGTTATGGAGCTTGACGTTTCTGATGGATAAGGGAATATTTTTTGGTTCAATTTATGGCTTTAGCATGCTTGTAACATTTCCCCCCCTGTTTTACCTACTATGAACAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAGTATGCATTATTTACGTTCTTTAATTTCACGTATTTGCAATCATTGGGCTTGCTGTGATCTCTAGGAATAATTTTAATTGTTATGGGCCTCTGATATCAGCTTGAACCGATGGATGTTTCTTTTAGTTACTACACGTATTACATAGAAACCTCGGCAAATTTCAAGCAAGGACTGGATACTTGGCTTTGGACTTAAAATAATTTCTGTAATGCACCACGAGTGGTTTGGGTTTTCCTTTATGTAATTTTATGAATCAATAAAATAGTTTCTTGTTCCTCTCTGGAGAAAAGTATAACAAAATTAAATACAATAAAACAAAAGATCTTTTTGGCTACATGACTTTGAATATTTCTTTAGGAGGTAATGAGCCTGGAGAAATAAGGTTTTTGCTGTTATAATGGAAATAAGGGAGATAGATGGTTTTCCAAGAAGCCTAAGGAGCCAATGGAAAAGAATAAAGAGGCTGAAACAAAGGTTTGAAGAATTCACCAATAAGATAATTGGTGATGGGAGGGACATCGAATTGCAAAGGTAGCAAGGCTTATGTTTATACCTAGGAAGTATAAACACTCCATTTTTTTTTGCAGAGTCTCGGACATCTATCATACATGGGCATGCTCGAACACACACCTGACATTTGAAAAAGTCTAATTGATAAGTGCTATAGATGTTGGATTTACAAAACTAGAGGTACTTCTAGGATACTTGCAAATATTCACAAATAAGGCTAACTTATCAAATAGATTCCAACCAAGAGCTTAGTTAGAAGATGAAACTCTTGGATCTAACATAGAATCTAGGATGGTTACTCCTAGACGACTCACCCTATAATTAGATTGATTGAAGCTAATCCAAAGAATTGATTGAACTTCAAACACAAAGCAAGATTTGAAAAAACCAGCACCAAGATGGATTTGAGAAACACAAGTTTCTTTGTTTGGTTGCAAAAAAGTCTAACAAATACAAAGTATTACATGCCCTTAAATAAGCCCAAATGGCCGTTCAAGTTCCCAAGAATCAAGTCCTTCAAATACAAATAAATGATAATTGGAGAAAATAAAACCTAGGAAATGAAGCTCAATTGCACAACAATTGAGAAGTCTAAATGTGGAACAAAAAAATGTAGTAATGTTTTAAATTTTCTTCAATATCTATGGTAGGATCCACTTGACTTGATGAGAACGTTTGACAAGTTTTAACATCATAAACTCTCAGGAGGTGCAATTTGGAAAGGCATCTCTTCACAGGTTCTACGTAGTTTTTTTGTCCATCGTGCCATCTTCCAAACTACACTACTTTTGCATGCCATCTTTACTTCATTCACTTTTTGACTTGTTGAAATAACGTTATGAAGAAATCAGGGTTCAACATTCGTTCTCTCCTTGTGCATTAGCTAGTTTTTGAAGATACAATGTAGAAGCCTTTTGATTTTTTTTTTTTTTGCCTTGTTCATTGTAATAGCTCCTTCAGGTACAAGTAATGGATCGAAGGTTGGATTCACATCACCAATTATTCAATATTTTAATTTCTTGATATAGTTCGAAAAAGAAAGTATAACAAAGTACAACATTTGTTGGATTTGAAAGCCCAATACCCACTAGAAAATGAAGGTGCCCACTTAAAAAAAATACCTAAATTTAATATGTCAAAAATAAGAGAGCAATTCCACTGTTTGATCCTATTTTCAAGTTTATTCCATAAACCTTATTGAAACTCAATCGTTTTTGGCTCAGTGTGGGAGACCCCGATTATTAGGGGGGGAAAAATCAACTGTTTTTTGCTCCAGTGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGTGGACTAGTTTCGCAGTCATCATCTCTCTATTTTTTAATGCCATAGGAAGGATTTATTCATGATTTCTTTTGGAGAGGAGTAGCGAAAGAATATGAAAACATTCTAGTAACTTGGAAAAACATCAACCTACTTGCGAGATGGGGGTGGAAATTCATGGAAGAAAATAATGCCCTATGGAAGGATGTAATTGCCAACAATTACTCTGGAGTAATAGATTCCAAAGCCGAATAGCCATGGGCCAAGCAAAGGTCCTTGGAAGGAGGTAATTGCCAACAATTATGGTTGGGTTGTTCCTTTTAGGAATTTGACCGTTGATGAGATTCTTGAGTGGATCAAGCTCTACAGCCTTGTTTATATACAATGACCTTCGAATGTAGAAGATTCTCTCTCTTGGACCCTCAAAAGAGATGGTTGATTTTCGGTTAATTCCTTAACTTTTGAGCTAAGCACTCATCAGGCCCTGTTGATGTTAATCCATCAAAGGTGATTTGGGTGGCTAAAGTCCCTAAGAGGAAGTGAAAGCCTTCATATGGGTCTTTGTCCGAAGGAATTTAAACACAAGGGATGTCTACAAAGAAGACGACTGAATAATCCGTGCCCCCAAATTGGTGCATGATGTGCAGATCAAATGAAGAAAATCGGCATCATCTTTTCTTCCTGTTCTCTTGGGCAAACTCCTTACGGGTTAGATTATTGAATTTTTTGGGGAGCTGGTGTGTCCTGAAAGAAATGATGGGGCCTGTTTTTGCTTATTTTTGGCAGTCCTTTCGAGGATAAAGGTCGTACTTTATGGTTCATGGTGACTTTGTGGAAACTGTGGCATGAGAGGAACTAGAAGGGCTTTGTAGAGAAGACGACTAACCTTTACAAGCTTTGTGACCCCATCAAACTCTTTGCATCCATCTGTGTTCTCTTTCAAAGTCTTTTTGTAATTATGATCTTGTGCATATTTCAGCTGATTGGGAGTCCTTTTTTGTGACCCTTTGCCCTAGTAGGGATAATTCATCTACCTTTTGTACTACTTCCTCCCAATCAATATATTTTTTGTTTCTTATTAAAAAAAAGGAGAAGAAAATACACCCTTATTGGATAATGAATATTATTGGTTGTCAATCACTGTTTCGATGAATTTAATTTTGTTTTGATGTTGACTCTTAGATATTATATTTACTTTTATATTATTAAGAATTTTGAAATATTAGTGGTCATAGGCTTGTGTGTATGCACATAATTACAAAGAAAAAAAAAACTATCATAACCCCAATATATCATGTCCTAGTTTTTTATCATGTTGCCGTGTTAGTCATTTTATTGGTGACATATTTCATGTTTCTTAAATAGTTACTGATCTGCCGTACTCTTGATTCTTATATTTTTCCACCGATTTTGATGGATTTCCTTTTCCTGTTGGCTTTGTAGAAATAATGACTACTATAGAGGAGAAATTGAATTAGTGCATGTAATGTTCCTATGCTGTACTCTCTAACTTTTTAAATTTGTATCTATTACTTTCATGTTCCTATGCTGTACTCTTGATTCTTATATTTTTCCACCGATTTTGATGGATTTCCTTTTCCTGTTGGCTTTGTAGAAATAATGACTACTATAGAGTAGAAATTGAATTAGTGCATGTAATGTTCCTATGCTGTACTCTCTAACTTTTTAAATTTGTATCTATTGCTTTCATCTTTAGCTGGAAGTATCTCTTACTGAGGAAAATTTTCTGTTGTTGCAGATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTAAGTTTATTGAGTCCAATATTCTACCTAATTCATTTTTATTTTCAATTTTTGTTCTTGGCATTCTGCATGATGGTTAGTTTCCTTGAAAGTGTTTGGTCCGTTTAAAAGGTCGCAATGCATCTATAGGTATGTCTTGTTTGTACATTTACATGTGATTCTGATTGCATTTGAGGCTTCTGATATGTCCACAGGAATCTGTTCCTTGAATTGTAATATATTTTTTATATTTTTTAAGGTTTAAGTTCTATTTTGGTCGAAAAAGCTTTTATATTATTTTGTTTGGCTTCTAAACTTGTAAATATTCTGTTTTGGTCACTAAGCTATCAACTTTATCCCTGAAACTATGCATAATAAACTAATTTAGTCATTTCTGTTAATTCTTTTTGTGGATCATTTGGAGTTTGCTAACCTTCTTTGTGTAACCCCAAAAACATACCTTGTAGACAGACACTCACCAGATTTAGGAACAAAAGATGTGTCGAATCAAGTTTCTGTTAAATGATTTTTATAAATTAAAGCAAAACTAATGACTGATAAAATATATTTTTTTATGAAAAGCTGACGGACAAAAATAGAATCATCTGGAAGACTAAAATGAAAGAAGTATAATATCTCCAGAAATAAAATAGTATTAAAACCTGTTTTTATGTTTCTTAAAAATTATTTATGAGGTTAAGAATTTTCTTTAAGAAAGATGCGATCATCTGATTGGGAGATATGCAGCTGGAACCTCTTTATGGAGCTTGTATCCCTTAGAATTTACCAAGTTCATAGACTAGCTTGAGTTGTAACATGGTTGGGTCATTTAAACTTGCCAGAGACAGGTTAGCTCTCGAGCTTTTAAAAGTGGTTATTCTTTTCCTTGGTATTTTCACTCTCTTACTGCTTGTGGGAGTATGAGGAAAGTCCCTTAAAATTTTGTGCACGAAACTATCCATGAAATTTTCAACAGAGGGACTTGAAGACTGTGTGAGCTCTTGACTTTTAGTAATGATTGGAGATATTTTTCTTTTGGTATTCACTCACGAATCTTGAAGATTCGCTGTTAAAGTGATCGGCCCTGTGATTTCCCTCCTTTGTGGTCATTGTATAGTCATGCCATTAAACATAGGCTTTACACCCATTTCATCTGGTATTGGGTCTTGTCATGGAAGATTTATTTTATTTGTGTTATTGTTGCTCATGCATATTTTATGGTTGAACTCGTAATTTAATTCTCACCAACATTTGTAGTTTTTGAACCATTGTCAACTTCAAGGACATTGCCCAACTGTTTATAAGGATTTCTATTGCATAATTTTTTGGAAGTGGTTTGGACCAATTGATGCACTTTTATAAGAAACAATCTCAACTTTGTATCTTGAAAAATATACTATTTCATGACTTTGCGGATTGACCTGAAATATTTTGATACTCTATTTATGGTTTATTTTCTACTTACCAATTGATCTATATGCATATAATTTTTGTTTAGGTTGTTCGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGTAATATGCTGATTTCAGTTTTATATGGGTTCTGCAGTTCTTTCATCTCTCTGTTGGACTTGTGCTTCCTGTTCAATTCTCATGACATGTACTGTGTAATATAATAAAACCTTCCTCGTTGGTGGAACGCTATAGGATAACGAGTTTAATTAGGTTGTCATTTAACTTTTTCTTTTTACGAGAAACAAATTTTTTTACTGAAATAATGAAAATGACTAATGCTCAAAAGTTACAGTTCTTTTTTGTTTTACTTCTCTCTCTCAAAAACATTTTGAAGAAAGTTGTAAGAAATTAAAATGTAGGTTTTGAGAAAACAAGTGTTTTTCTGCATTCACAATTTGGTCAGGATTTTGAAGTATTTCTAAAATGTACGATACCGAATTACTTTCTAAAAGAACTATACAAATTAAAGGATAATTTTTAGATAGACCCAATTTTTTGTTCTTATGATCGCCTCCTGTGGAGGAAATTTCCTATGAACTAGACCCATCTGTATGAACTAGCGTGGTCAAGAATCTTATGGTCTAATCCTCAAGCTTATGTGTCTTCTAGGGTGTGTGGTAATGGTTGGGTAGTTTGACATTCTTAAATGCCTTGTGTTCTCTTCAAAATCTCTGAAACTATTCTTATGTGCTTAGACCCTTCTTGATTGCAGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGGTAAATAACGTTCGGTGTTCGTATGCACCGTTACTTCTTGCTTATTTTTAAAGTTCGACGTTTCAGTTTTTTTGATAAACTAATTTGATGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATGTCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTAAATGAAGTGATTGTGCACTGGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATGGAAATCAACAGTCTTTCACTGTTCTTGACCATTGATCTGACATTACATCTTATTTCAAACGACGCTTAAATGTGATTCAGAAAGAAGAACGATTCCCCTTTGTTTGAGCAGAAGAATATAATATCCTCAACGAATTGAAG

mRNA sequence

CTGCCAAGCCCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGACTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTCGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATGTCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTAAATGAAGTGATTGTGCACTGGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATGGAAATCAACAGTCTTTCACTGTTCTTGACCATTGATCTGACATTACATCTTATTTCAAACGACGCTTAAATGTGATTCAGAAAGAAGAACGATTCCCCTTTGTTTGAGCAGAAGAATATAATATCCTCAACGAATTGAAG

Coding sequence (CDS)

ATGGCGGGACCTTCCTCGACTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTCGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAG

Homology

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BLAST of CmoCh05G008030 vs. Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-40
Identity = 102/211 (48.34%), Postives = 130/211 (61.61%), Query Frame = 1


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYT---LPQYQQAQQLFQRDAQTITP 98
           APAGP    P +    P A+ +P+    P P P       LP  +  + L  R      P
Sbjct: 241 APAGPAVIGPSL----PLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR--P 300

Query: 99  EALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCG 158
              E     +A    E  +E KKK  P K       AAG SWEDP+L EW  +D+R+FCG
Sbjct: 301 PRPEPPPGLMALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCG 360

Query: 159 DLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKY 218
           DLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKY
Sbjct: 361 DLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKY 420

Query: 219 VGNRPIKLRKSNWKERTDYDALERHKNHTQK 240
           VG+RPIKLRKS WK+R + D + + +   +K
Sbjct: 421 VGSRPIKLRKSMWKDR-NLDVVRKKQKEKKK 444

[Close]

BLAST of CmoCh05G008030 vs. Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-40
Identity = 102/211 (48.34%), Postives = 129/211 (61.14%), Query Frame = 1


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYT---LPQYQQAQQLFQRDAQTITP 98
           APAGP    P +    P A+ +P+    P P P       LP  +  + L  R      P
Sbjct: 273 APAGPAVIGPSL----PLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR--P 332

Query: 99  EALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCG 158
              E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCG
Sbjct: 333 PRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCG 392

Query: 159 DLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKY 218
           DLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKY
Sbjct: 393 DLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKY 452

Query: 219 VGNRPIKLRKSNWKERTDYDALERHKNHTQK 240
           VG+RPIKLRKS WK+R + D + + +   +K
Sbjct: 453 VGSRPIKLRKSMWKDR-NLDVVRKKQKEKKK 476

[Close]

BLAST of CmoCh05G008030 vs. Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-40
Identity = 102/211 (48.34%), Postives = 129/211 (61.14%), Query Frame = 1


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYT---LPQYQQAQQLFQRDAQTITP 98
           APAGP    P +    P A+ +P+    P P P       LP  +  + L  R      P
Sbjct: 267 APAGPAVIGPSL----PLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR--P 326

Query: 99  EALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCG 158
              E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCG
Sbjct: 327 PRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCG 386

Query: 159 DLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKY 218
           DLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKY
Sbjct: 387 DLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKY 446

Query: 219 VGNRPIKLRKSNWKERTDYDALERHKNHTQK 240
           VG+RPIKLRKS WK+R + D + + +   +K
Sbjct: 447 VGSRPIKLRKSMWKDR-NLDVVRKKQKEKKK 470

[Close]

BLAST of CmoCh05G008030 vs. Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-40
Identity = 102/211 (48.34%), Postives = 129/211 (61.14%), Query Frame = 1


Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYT---LPQYQQAQQLFQRDAQTITP 98
           APAGP    P +    P A+ +P+    P P P       LP  +  + L  R      P
Sbjct: 267 APAGPAVIGPSL----PLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPR--P 326

Query: 99  EALESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCG 158
              E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCG
Sbjct: 327 PRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCG 386

Query: 159 DLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKY 218
           DLGNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKY
Sbjct: 387 DLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKY 446

Query: 219 VGNRPIKLRKSNWKERTDYDALERHKNHTQK 240
           VG+RPIKLRKS WK+R + D + + +   +K
Sbjct: 447 VGSRPIKLRKSMWKDR-NLDVVRKKQKEKKK 470

[Close]

BLAST of CmoCh05G008030 vs. Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 9.0e-40
Identity = 83/131 (63.36%), Postives = 102/131 (77.86%), Query Frame = 1


Query: 113 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 172
           K E  KK I R AAG SWED +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A
Sbjct: 274 KQEKVKKCI-RVAAGVSWEDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKA 333

Query: 173 RVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALER 232
           +VVRDKRTGKTKGYGFVSF +P D   A++EMNG+YVG+RPIKLRKS WK+R     LE 
Sbjct: 334 KVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSAWKDRN----LEV 393

Query: 233 HKNHTQKKSKL 244
            + + ++K KL
Sbjct: 394 VRKNQKEKKKL 399

[Close]

BLAST of CmoCh05G008030 vs. TrEMBL
Match: A0A0A0LH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-124
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 1


Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQY SPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPAP--AAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPAP  A YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of CmoCh05G008030 vs. TrEMBL
Match: F6H614_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00630 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 7.0e-108
Identity = 213/256 (83.20%), Postives = 226/256 (88.28%), Query Frame = 1


Query: 5   SSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPA-VPLP-- 64
           +ST ++ S+SS SQFTYSN SYFPLPFHLQQS P  A  QYP PYVA P PP  VP+P  
Sbjct: 2   ASTSASSSTSSSSQFTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPV 61

Query: 65  ----VTSVYPAPAPAA--YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 124
               V  VYPAPAP A  Y+LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 62  KIPAVAPVYPAPAPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 121

Query: 125 TKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 184
           TKKKAIPRKAAGQ+WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA+VV
Sbjct: 122 TKKKAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV 181

Query: 185 RDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKN 244
           RDKRTGKT+GYGFVSFSNP DLAAALKEMNGKYVGNRPIKLRKSNW+ERTD++ALER KN
Sbjct: 182 RDKRTGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKN 241

Query: 245 HTQKKSKLPKKSILHK 252
           H QKK KL KKS+LHK
Sbjct: 242 HIQKKPKLSKKSVLHK 257

[Close]

BLAST of CmoCh05G008030 vs. TrEMBL
Match: F6HBY9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01710 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-103
Identity = 209/256 (81.64%), Postives = 222/256 (86.72%), Query Frame = 1


Query: 5   SSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPA-VPLP-- 64
           S++ S+ SSSS SQFTYSN SYFPLPFHLQQS P  A  QYP PYVA   PP  VP+P  
Sbjct: 3   STSASSSSSSSSSQFTYSNASYFPLPFHLQQSGPM-AVSQYPQPYVAPSPPPVHVPVPPV 62

Query: 65  ----VTSVYPAPAPAA--YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 124
               +  VYPA AP A  Y+LPQYQQA QLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 63  KISTIAPVYPASAPGAGVYSLPQYQQAHQLFQRDAQTITPEALESVKAALASSEIEHKAE 122

Query: 125 TKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 184
           TKK+AIPRK AGQ+WEDPTLA+WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV
Sbjct: 123 TKKRAIPRKVAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 182

Query: 185 RDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKN 244
           RDKRTGKT+G+GFVSFSNP+DLAAALKEMNGKYVGNRPIKLRKSNWKERTD +ALER KN
Sbjct: 183 RDKRTGKTRGFGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDSEALERQKN 242

Query: 245 HTQKKSKLPKKSILHK 252
           H QKK KL KKSILHK
Sbjct: 243 HIQKKPKLSKKSILHK 257

[Close]

BLAST of CmoCh05G008030 vs. TrEMBL
Match: A5B7R7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033169 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 4.0e-103
Identity = 208/256 (81.25%), Postives = 222/256 (86.72%), Query Frame = 1


Query: 5   SSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPA-VPLP-- 64
           S++ S+ SSSS SQFTYSN SYFPLPFHLQQS P  A  QYP PYVA   PP  VP+P  
Sbjct: 3   STSASSSSSSSSSQFTYSNASYFPLPFHLQQSGPM-AVSQYPQPYVAPSPPPVHVPVPPV 62

Query: 65  ----VTSVYPAPAPAA--YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 124
               +  VYPA AP A  Y+LPQYQQA QLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 63  KISTIAPVYPASAPGAGVYSLPQYQQAHQLFQRDAQTITPEALESVKAALASSEIEHKAE 122

Query: 125 TKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 184
           TKK+AIPRK AGQ+WEDPTLA+WPENDYRLFCGDLGNEVNDDVLSK+FSRFPSFNMARVV
Sbjct: 123 TKKRAIPRKVAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMARVV 182

Query: 185 RDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKN 244
           RDKRTGKT+G+GFVSFSNP+DLAAALKEMNGKYVGNRPIKLRKSNWKERTD +ALER KN
Sbjct: 183 RDKRTGKTRGFGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDSEALERQKN 242

Query: 245 HTQKKSKLPKKSILHK 252
           H QKK KL KKSILHK
Sbjct: 243 HIQKKPKLSKKSILHK 257

[Close]

BLAST of CmoCh05G008030 vs. TrEMBL
Match: A0A067JW37_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23547 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 8.3e-101
Identity = 202/253 (79.84%), Postives = 212/253 (83.79%), Query Frame = 1


Query: 5   SSTPSAPSSSSGSQFTYS------NGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAV 64
           S  PS+ S+SS SQFTY+      NGSYFP+PFHLQQS    A P            PAV
Sbjct: 2   SIPPSSTSASSASQFTYTTTTPTANGSYFPMPFHLQQSVQTYAAP------------PAV 61

Query: 65  PLPVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 124
              V  VYPAP    Y+LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHK ETKK
Sbjct: 62  LPAVAPVYPAPVGPVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKQETKK 121

Query: 125 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 184
           KA+PRKAAGQ+WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 122 KAVPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 181

Query: 185 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 244
           RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNW+ERTD++ALER KNH  
Sbjct: 182 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKNHNL 241

Query: 245 KKSKLPKKSILHK 252
           KK KLPKKSILHK
Sbjct: 242 KKPKLPKKSILHK 242

[Close]

BLAST of CmoCh05G008030 vs. TAIR10
Match: AT3G04500.1 (AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 338.6 bits (867), Expect = 3.3e-93
Identity = 182/251 (72.51%), Postives = 202/251 (80.48%), Query Frame = 1


Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           M+ P S+ S+ SSSS SQ+TY+  SY+  P+   Q   A   P  P+P  + PG    P 
Sbjct: 1   MSIPPSSGSS-SSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQ 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PV      P PA Y  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+A
Sbjct: 61  PV-----GPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRT
Sbjct: 121 IPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSF NP DLAAALKEMNGKYVGNRPIKLRKS+WKERTD +A ER K+H+ KK
Sbjct: 181 GKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKK 240

Query: 241 SKLPKKSILHK 252
            K  KKSILHK
Sbjct: 241 QKTVKKSILHK 245

[Close]

BLAST of CmoCh05G008030 vs. TAIR10
Match: AT3G14100.1 (AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           EMNGK++ +R I   + NW
Sbjct: 204 EMNGKWLSSRQI---RCNW 219

[Close]

BLAST of CmoCh05G008030 vs. TAIR10
Match: AT1G17370.1 (AT1G17370.1 oligouridylate binding protein 1B)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1


Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           E+ GK++G+R I   + NW
Sbjct: 199 EITGKWLGSRQI---RCNW 214

[Close]

BLAST of CmoCh05G008030 vs. TAIR10
Match: AT3G19130.1 (AT3G19130.1 RNA-binding protein 47B)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 142 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 201
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 202 LKEMNGKYVGNRPIKL 217
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

[Close]

BLAST of CmoCh05G008030 vs. TAIR10
Match: AT5G54900.1 (AT5G54900.1 RNA-binding protein 45A)

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 142 DYRLFCGDLGNEVNDDVLSKAFSR-FPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 201
           D+ +F GDL  EV D +LS  F   + S   A+VV D+ TG++KGYGFV F++  +   A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212

Query: 202 LKEMNGKYVGNRPIKL 217
           + EMNG+Y   RP+++
Sbjct: 213 MTEMNGQYCSTRPMRI 228

[Close]

BLAST of CmoCh05G008030 vs. NCBI nr
Match: gi|659082432|ref|XP_008441837.1| (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 454.5 bits (1168), Expect = 1.2e-124
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 1


Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA P YPSPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPPYPSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPAP--AAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPAP  A YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of CmoCh05G008030 vs. NCBI nr
Match: gi|449470234|ref|XP_004152823.1| (PREDICTED: RNA-binding protein 42 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 2.0e-124
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 1


Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQY SPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPAP--AAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPAP  A YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]

BLAST of CmoCh05G008030 vs. NCBI nr
Match: gi|359488053|ref|XP_002266454.2| (PREDICTED: RNA-binding protein 42-like isoform X1 [Vitis vinifera])

HSP 1 Score: 398.3 bits (1022), Expect = 1.0e-107
Identity = 213/256 (83.20%), Postives = 226/256 (88.28%), Query Frame = 1


Query: 5   SSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPA-VPLP-- 64
           +ST ++ S+SS SQFTYSN SYFPLPFHLQQS P  A  QYP PYVA P PP  VP+P  
Sbjct: 2   ASTSASSSTSSSSQFTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPV 61

Query: 65  ----VTSVYPAPAPAA--YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 124
               V  VYPAPAP A  Y+LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 62  KIPAVAPVYPAPAPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 121

Query: 125 TKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 184
           TKKKAIPRKAAGQ+WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA+VV
Sbjct: 122 TKKKAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV 181

Query: 185 RDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKN 244
           RDKRTGKT+GYGFVSFSNP DLAAALKEMNGKYVGNRPIKLRKSNW+ERTD++ALER KN
Sbjct: 182 RDKRTGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKN 241

Query: 245 HTQKKSKLPKKSILHK 252
           H QKK KL KKS+LHK
Sbjct: 242 HIQKKPKLSKKSVLHK 257

[Close]

BLAST of CmoCh05G008030 vs. NCBI nr
Match: gi|1009117912|ref|XP_015875574.1| (PREDICTED: RNA-binding protein 42 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 385.6 bits (989), Expect = 6.8e-104
Identity = 211/259 (81.47%), Postives = 225/259 (86.87%), Query Frame = 1


Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGS-YFPLPFHLQQSAPAPAGPQYPSPYVAAPG---PP 60
           MA P S+    SS+S SQFTYSNGS YFPLPFHLQQS   PA  QYP+PY AAP    P 
Sbjct: 1   MATPPSSGPPSSSASSSQFTYSNGSSYFPLPFHLQQS---PAVSQYPAPYAAAPPSVQPV 60

Query: 61  AVPLP--VTSVYPAPAPAA--YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEH 120
            +P P  V  +YPA AP A  Y+LPQYQQAQQLFQRDAQTITPEALESVKAALA+SEIEH
Sbjct: 61  PIPAPPVVAPIYPASAPVAGVYSLPQYQQAQQLFQRDAQTITPEALESVKAALANSEIEH 120

Query: 121 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 180
           KAE KKKA+PRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA
Sbjct: 121 KAEAKKKAVPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALER 240
           RVVRDKRTGKTKGYGFVSF+NP+DLAAALKEMNGKYVGNRPIKLRKSNW+ERTD++ALER
Sbjct: 181 RVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALER 240

Query: 241 HKNHTQKKSKLPKKSILHK 252
           HKN+T KK KL KKSI HK
Sbjct: 241 HKNNTHKKPKLSKKSIFHK 256

[Close]

BLAST of CmoCh05G008030 vs. NCBI nr
Match: gi|225443254|ref|XP_002272469.1| (PREDICTED: RNA-binding protein 42 [Vitis vinifera])

HSP 1 Score: 383.6 bits (984), Expect = 2.6e-103
Identity = 209/256 (81.64%), Postives = 222/256 (86.72%), Query Frame = 1


Query: 5   SSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPA-VPLP-- 64
           S++ S+ SSSS SQFTYSN SYFPLPFHLQQS P  A  QYP PYVA   PP  VP+P  
Sbjct: 3   STSASSSSSSSSSQFTYSNASYFPLPFHLQQSGPM-AVSQYPQPYVAPSPPPVHVPVPPV 62

Query: 65  ----VTSVYPAPAPAA--YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 124
               +  VYPA AP A  Y+LPQYQQA QLFQRDAQTITPEALESVKAALASSEIEHKAE
Sbjct: 63  KISTIAPVYPASAPGAGVYSLPQYQQAHQLFQRDAQTITPEALESVKAALASSEIEHKAE 122

Query: 125 TKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 184
           TKK+AIPRK AGQ+WEDPTLA+WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV
Sbjct: 123 TKKRAIPRKVAGQTWEDPTLADWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 182

Query: 185 RDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKN 244
           RDKRTGKT+G+GFVSFSNP+DLAAALKEMNGKYVGNRPIKLRKSNWKERTD +ALER KN
Sbjct: 183 RDKRTGKTRGFGFVSFSNPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDSEALERQKN 242

Query: 245 HTQKKSKLPKKSILHK 252
           H QKK KL KKSILHK
Sbjct: 243 HIQKKPKLSKKSILHK 257

The following BLAST results are available for this feature:

BLAST of CmoCh05G008030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBM42_BOVIN	2.4e-40	48.34	RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1	[more]
RBM42_HUMAN	3.1e-40	48.34	RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1	[more]
RBM42_MOUSE	3.1e-40	48.34	RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1	[more]
RBM42_RAT	3.1e-40	48.34	RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1	[more]
RBM42_DANRE	9.0e-40	63.36	RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2	[more]

BLAST of CmoCh05G008030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH39_CUCSA	1.4e-124	93.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1	[more]
F6H614_VITVI	7.0e-108	83.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00630 PE=4 SV=...	[more]
F6HBY9_VITVI	1.8e-103	81.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01710 PE=4 SV=...	[more]
A5B7R7_VITVI	4.0e-103	81.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033169 PE=4 SV=1	[more]
A0A067JW37_JATCU	8.3e-101	79.84	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23547 PE=4 SV=1	[more]

BLAST of CmoCh05G008030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04500.1	3.3e-93	72.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G14100.1	4.0e-14	45.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17370.1	1.5e-13	43.04	oligouridylate binding protein 1B	[more]
AT3G19130.1	3.4e-13	46.05	RNA-binding protein 47B	[more]
AT5G54900.1	1.7e-12	43.42	RNA-binding protein 45A	[more]

BLAST of CmoCh05G008030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082432\|ref\|XP_008441837.1\|	1.2e-124	93.68	PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo]	[more]
gi\|449470234\|ref\|XP_004152823.1\|	2.0e-124	93.68	PREDICTED: RNA-binding protein 42 [Cucumis sativus]	[more]
gi\|359488053\|ref\|XP_002266454.2\|	1.0e-107	83.20	PREDICTED: RNA-binding protein 42-like isoform X1 [Vitis vinifera]	[more]
gi\|1009117912\|ref\|XP_015875574.1\|	6.8e-104	81.47	PREDICTED: RNA-binding protein 42 isoform X1 [Ziziphus jujuba]	[more]
gi\|225443254\|ref\|XP_002272469.1\|	2.6e-103	81.64	PREDICTED: RNA-binding protein 42 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008030.1	CmoCh05G008030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 145..215 score: 5.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 144..217 score: 5.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 143..221 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 139..225 score: 1.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 126..223 score: 1.33
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 130..224 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G008030	Cucsa.178480	Cucumber (Gy14) v1	cgycmoB0510
CmoCh05G008030	CmaCh12G009600	Cucurbita maxima (Rimu)	cmacmoB191
CmoCh05G008030	CmaCh05G007620	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G008030	Csa2G075290	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G008030	MELO3C008710	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G008030	CSPI02G07290	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G008030	Lsi11G008800	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G008030	Cp4.1LG11g06850	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G008030	Cp4.1LG07g07960	Cucurbita pepo (Zucchini)	cmocpeB743
CmoCh05G008030	CsaV3_2G009740	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G008030	Bhi06G000975	Wax gourd	cmowgoB0924
CmoCh05G008030	CsGy2G007510	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G008030	Carg19845	Silver-seed gourd	carcmoB0232
CmoCh05G008030	Carg26545	Silver-seed gourd	carcmoB0976

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G008030	CmoCh12G009630	Cucurbita moschata (Rifu)	cmocmoB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G008030	Watermelon (97103) v2	cmowmbB784
CmoCh05G008030	Wax gourd	cmowgoB0933
CmoCh05G008030	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G008030	Watermelon (97103) v1	cmowmB760
CmoCh05G008030	Melon (DHL92) v3.6.1	cmomedB822