MELO3C008515.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008515.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ARGOS-like protein
Location	chr05 : 11569096 .. 11570101 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTCTTCCAATCACCGCCTCTCTCATCATCATCATCATCATCATCATCATCATTCCATAAATTCCCCCATTTCTCCTCTTCCCCTTTTCCGATTTCACTTTTTTTCTTTTCTTCCGTCTCACTTTCTAGATCCATTTTTCATCCTACCCTTTTGCGATTCCCTCATGCTCCTCCTTCTCCATCCATTCCTTCTTTGATTTTGTCTCTTTTTAATTTACATGACTCTTGGATTTCAAGAAGCTGAGAAAAGGGGAGTTCCCAATCCCAACCATTTTCTTAATTTGCACCAACCCTCTCGAAATCATCACTATTTCATGGATGCATCCTCCAATAATTCCAATTTCGGTTCCGATTCCACCAATACGATTACGTATTACGCCGCCGCAGCACAAGACCGCCGTAAGGTCGAGTATTTGCGATCTCCATCCCAGGGGACACCACGTCGATTGGTGCCGGCCGCCAGCTATTTAGGGGTGCTGCTGTGTTTGGCGGCGTCGTTGTTGATTCTTCCGTTGGTTCTACCGCCGCTGCCGCCGCCGCCCTTGATGCTGCTGCTGCTTCTTCCGATTGGGATTTTGGGAATGCTAATGGTGTTAGCCTTTATGCCTTCTAATGACACCAAGGATATAACCTCTTCCTCTCATACATATATGTAATGTAAATGTTCGATCATCTTTTTTTTTTCTTTTTTTTCTTTTTGGGAAAATTTTGTATGTTCTTTAATTTCTCTTTGCACTTCAACAAAAGAAGAAGGAAAAAAAAAAAAGGGATAGATTGGAAATCGGTTCTTTGATTACTTGAAAAAGTTTAATTTGTTAGATTTAATAATGATGATCATGAATCTGGCTGCTTCAAATTTTTATTTACCATTCTTTTATTATTTTTGTTTCTATGAATCTGTACCATTGCATTCTCTCACGTTTCAATTCTTTTAATTACTGTGGGTCCTTCCATTTTATGTCTGTCTTCTTTTTTTTCTTTTCTTTGTTTTACACCATAGCTTC

mRNA sequence

CCTCTCTTCCAATCACCGCCTCTCTCATCATCATCATCATCATCATCATCATCATTCCATAAATTCCCCCATTTCTCCTCTTCCCCTTTTCCGATTTCACTTTTTTTCTTTTCTTCCGTCTCACTTTCTAGATCCATTTTTCATCCTACCCTTTTGCGATTCCCTCATGCTCCTCCTTCTCCATCCATTCCTTCTTTGATTTTGTCTCTTTTTAATTTACATGACTCTTGGATTTCAAGAAGCTGAGAAAAGGGGAGTTCCCAATCCCAACCATTTTCTTAATTTGCACCAACCCTCTCGAAATCATCACTATTTCATGGATGCATCCTCCAATAATTCCAATTTCGGTTCCGATTCCACCAATACGATTACGTATTACGCCGCCGCAGCACAAGACCGCCGTAAGGTCGAGTATTTGCGATCTCCATCCCAGGGGACACCACGTCGATTGGTGCCGGCCGCCAGCTATTTAGGGGTGCTGCTGTGTTTGGCGGCGTCGTTGTTGATTCTTCCGTTGGTTCTACCGCCGCTGCCGCCGCCGCCCTTGATGCTGCTGCTGCTTCTTCCGATTGGGATTTTGGGAATGCTAATGGTGTTAGCCTTTATGCCTTCTAATGACACCAAGGATATAACCTCTTCCTCTCATACATATATGTAATGTAAATGTTCGATCATCTTTTTTTTTTCTTTTTTTTCTTTTTGGGAAAATTTTGTATGTTCTTTAATTTCTCTTTGCACTTCAACAAAAGAAGAAGGAAAAAAAAAAAAGGGATAGATTGGAAATCGGTTCTTTGATTACTTGAAAAAGTTTAATTTGTTAGATTTAATAATGATGATCATGAATCTGGCTGCTTCAAATTTTTATTTACCATTCTTTTATTATTTTTGTTTCTATGAATCTGTACCATTGCATTCTCTCACGTTTCAATTCTTTTAATTACTGTGGGTCCTTCCATTTTATGTCTGTCTTCTTTTTTTTCTTTTCTTTGTTTTACACCATAGCTTC

Coding sequence (CDS)

ATGACTCTTGGATTTCAAGAAGCTGAGAAAAGGGGAGTTCCCAATCCCAACCATTTTCTTAATTTGCACCAACCCTCTCGAAATCATCACTATTTCATGGATGCATCCTCCAATAATTCCAATTTCGGTTCCGATTCCACCAATACGATTACGTATTACGCCGCCGCAGCACAAGACCGCCGTAAGGTCGAGTATTTGCGATCTCCATCCCAGGGGACACCACGTCGATTGGTGCCGGCCGCCAGCTATTTAGGGGTGCTGCTGTGTTTGGCGGCGTCGTTGTTGATTCTTCCGTTGGTTCTACCGCCGCTGCCGCCGCCGCCCTTGATGCTGCTGCTGCTTCTTCCGATTGGGATTTTGGGAATGCTAATGGTGTTAGCCTTTATGCCTTCTAATGACACCAAGGATATAACCTCTTCCTCTCATACATATATGTAA

Protein sequence

MTLGFQEAEKRGVPNPNHFLNLHQPSRNHHYFMDASSNNSNFGSDSTNTITYYAAAAQDRRKVEYLRSPSQGTPRRLVPAASYLGVLLCLAASLLILPLVLPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDTKDITSSSHTYM

Homology

[Close]

BLAST of MELO3C008515.2 vs. NCBI nr
Match: KGN61450.1 (hypothetical protein Csa_2G123610 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 127/145 (87.59%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNPNHFLNLHQPSRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 60
           MTLGFQEAEKRGVPNPNHFL+LHQ    XXXXXXXXXXXXXXXXXXXXX          R
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60

Query: 61  RKVEYLRSPSQGTPRRLVPAASYLGVLLCXXXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           RKVEYLRS SQGTPRRLVPAASYLGVLLC  XXXXXXXXXXXXXXXXXXXXXXXXPIGIL
Sbjct: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSNDTKDITSSSHTYM
Sbjct: 121 GMLMVLAFMPSNDTKDITSSSHTYM 145

[Close]

BLAST of MELO3C008515.2 vs. NCBI nr
Match: XP_022974015.1 (ARGOS-like protein [Cucurbita maxima] >XP_022974016.1 ARGOS-like protein [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 6.6e-15
Identity = 91/145 (62.76%), Postives = 102/145 (70.34%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNPNHFLNLHQPSRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 60
           M+LG  +A+  GVPNP+ F ++H     XXXXXXXXX                      +
Sbjct: 1   MSLGLPDADTPGVPNPDDFRSMHXXXXXXXXXXXXXXAADSKPAFPSSNTTPYDAAPQEQ 60

Query: 61  RKVEYLRSPSQGTPRRLVPAASYLGVLLCXXXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           R +EY RS SQGT RRLVPAA+YL VL+ XXXXXXXXXXXXXXXXXXXXXXXXXXPIGI+
Sbjct: 61  RMLEYTRSLSQGTARRLVPAATYLAVLVXXXXXXXXXXXXXXXXXXXXXXXXXXXPIGIM 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSN  KDITSS  TYM
Sbjct: 121 GMLMVLAFMPSNHAKDITSSHTTYM 145

[Close]

BLAST of MELO3C008515.2 vs. NCBI nr
Match: XP_023514167.1 (ARGOS-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 65/86 (75.58%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 60  RRKVEYLRSPSQGTPRRLVPAASYLGVLLCXXXXXXXXXXXXXXXXXXXXXXXXXXPIGI 119
           +R +EY RS SQGT RRLVPAA+YL VL+C         XXXXXXXXXXXXXXXXX IGI
Sbjct: 70  QRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPXXXXXXXXXXXXXXXXXXIGI 129

Query: 120 LGMLMVLAFMPSNDTKDITSSSHTYM 146
           LGMLMVLAFMPSND KDI SSSHTYM
Sbjct: 130 LGMLMVLAFMPSNDAKDI-SSSHTYM 154

[Close]

BLAST of MELO3C008515.2 vs. NCBI nr
Match: XP_022930113.1 (ARGOS-like protein [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 3.1e-12
Identity = 91/145 (62.76%), Postives = 101/145 (69.66%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNPNHFLNLHQPSRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 60
           M+LG  + +  GVPNP+ F++             XXXXXXXXXXXXXXXXXX       +
Sbjct: 1   MSLGLPDTDTPGVPNPDDFIS-------------XXXXXXXXXXXXXXXXXXHDAAPQEQ 60

Query: 61  RKVEYLRSPSQGTPRRLVPAASYLGVLLCXXXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           R +EY RS SQGT RRLVPAA+YL VL+C         XXXXXXXXXXXXXXXXX IGIL
Sbjct: 61  RMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPXXXXXXXXXXXXXXXXXXIGIL 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSND KDI SSSHT M
Sbjct: 121 GMLMVLAFMPSNDAKDI-SSSHTSM 131

[Close]

BLAST of MELO3C008515.2 vs. TrEMBL
Match: tr|A0A0A0LHQ4|A0A0A0LHQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123610 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 127/145 (87.59%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNPNHFLNLHQPSRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 60
           MTLGFQEAEKRGVPNPNHFL+LHQ    XXXXXXXXXXXXXXXXXXXXX          R
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60

Query: 61  RKVEYLRSPSQGTPRRLVPAASYLGVLLCXXXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           RKVEYLRS SQGTPRRLVPAASYLGVLLC  XXXXXXXXXXXXXXXXXXXXXXXXPIGIL
Sbjct: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSNDTKDITSSSHTYM
Sbjct: 121 GMLMVLAFMPSNDTKDITSSSHTYM 145

The following BLAST results are available for this feature:

BLAST of MELO3C008515.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61450.1	3.8e-31	87.59	hypothetical protein Csa_2G123610 [Cucumis sativus]	[more]
XP_022974015.1	6.6e-15	62.76	ARGOS-like protein [Cucurbita maxima] >XP_022974016.1 ARGOS-like protein [Cucurb...	[more]
XP_023514167.1	1.4e-12	75.58	ARGOS-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022930113.1	3.1e-12	62.76	ARGOS-like protein [Cucurbita moschata]	[more]

BLAST of MELO3C008515.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C008515.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C008515.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHQ4\|A0A0A0LHQ4_CUCSA	2.5e-31	87.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123610 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0046622	positive regulation of organ growth

Vocabulary: **INTERPRO**
Term	Definition
IPR037468	ARGOS/ARL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0046622	positive regulation of organ growth
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008515.2.1	MELO3C008515.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037468	ARGOS/ARL	PANTHER	PTHR36023	FAMILY NOT NAMED	coord: 13..140
None	No IPR available	PANTHER	PTHR36023:SF3	ARGOS-LIKE PROTEIN-RELATED	coord: 13..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008515.2	Csa2G123610	Cucumber (Chinese Long) v2	cumedB126
MELO3C008515.2	CSPI02G08930	Wild cucumber (PI 183967)	cpimedB126
MELO3C008515.2	Cucsa.266210	Cucumber (Gy14) v1	cgymedB441
MELO3C008515.2	Lsi09G010760	Bottle gourd (USVL1VR-Ls)	lsimedB030
MELO3C008515.2	CsGy2G009200	Cucumber (Gy14) v2	cgybmedB112
MELO3C008515.2	Cla002012	Watermelon (97103) v1	medwmB429
MELO3C008515.2	Bhi12G001194	Wax gourd	medwgoB451
MELO3C008515.2	CsaV3_2G011320	Cucumber (Chinese Long) v3	cucmedB128

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008515.2	Silver-seed gourd	carmedB0747
MELO3C008515.2	Watermelon (97103) v2	medwmbB382
MELO3C008515.2	Cucurbita maxima (Rimu)	cmamedB317
MELO3C008515.2	Cucurbita moschata (Rifu)	cmomedB302
MELO3C008515.2	Cucurbita pepo (Zucchini)	cpemedB208
MELO3C008515.2	Watermelon (Charleston Gray)	medwcgB381