CsaV3_2G011320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G011320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 8590016 .. 8593770 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAATATATATATATATATTGATTGTTTGGATAGGTTATATGTATTTTGAGTAGAATAATTTATGGATTAATTTTAAGTGGATGAGTGTTTTCAGAAAAGTGGATAGTTGATGAATTTTGGAGAGAAAGAAAGGGAAATGAATTAAGAAGCAGAAAAAGAAAGGATGTGTAATGAAAGATTGGAAGAATTATAGGAAGAGAAAAGGAGAAGTATGAGATTAGAAAGGGTAAAGGGGAGGGTGGCGTTGGCGTGATTTAGAAGTAAATGAGTTATAATGGAAATTAAGTAAGGATGAGAAATTGGATTTAATGAAAAAAAAGGAAGAGAGAGAGAAGAAAAGGGAAGGAAAAAGAGGGAAGGGGCTCGGAACCTTGAAAGACAGAGAGAGAGAGAGTGTTCGTTGTGTTTCCAAAACCAGCAAGTTGCATCTTTCCTAAAAGCCCCCACCTTCCCTCTTTCTAATCAAAATTCACTGAACCCAAATCCCCATCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTAACGTTTCAGTAAAATTAAAAATCCATATAACAAGACCCCATCAAATCAATATTCATCCCCCTCTTCCTCCCTTCCAATTCACCGCCTCTCTCATCATCATCATCATCATATCATTCCATAAATTCCCCCATTTCTCCTCTTCCCCTTTTCTGATTTCACTTTATTTATTTCTTCCATCTCACCTTCTAGATCCATTTTTCATCCTATACCCTATTCTACTCTTTTCGGCCATATATCTCATCTCTCATGCACCTCCTTCTGGATCCTTTCATTCTTTGATTTTGTATCTTTTTCATTTAGATGACTCTTGGATTCCAAGAAGCTGAGAAAAGGGGTGTTCCCAATCCCAACCATTTTCTTCATTTGCACCAACCCTCTCAAAATCATTACTATTCCATGGATGGATCCTCCAATAATTCCAATTTCGGTTCCGATTCCACCAATAGGATTACGTATTACGCCGCCGCAGCACAAGACCGGCGTAAGGTTGAGTATTTGCGATCTCTATCCCAGGGGACACCACGTCGATTGGTGCCGGCCGCGAGCTATTTAGGGGTTCTGCTCTGTTTGGCGGCGTCTTTGTTGATTCTTCCGTTGGTTCTACCGCCGCTGCCGCCGCCGCCTTTGATGCTGCTGCTGCTTCTTCCGATTGGGATTTTGGGAATGCTAATGGTGTTAGCGTTTATGCCTTCTAATGACACCAAGGATATAACCTCTTCCTCTCATACATATATGTAATGTAAATGTTCAATCATCTTTTTCTTCCTTTTTTTCTTTTTGGGAAAATTTTGTATGTTCTTTAATTTCTCTTTGCACATCATCAAAAGAAGGGGAAAAAAAAAGGGAGAGATTGAAAATCGGTTCTTTGATTACTCGAAAAAGTTTAATTTGTTAGATTTAATAATGATGATGTGATGAATCTGGCTGCTTCGAATTTTTTATTTACCATTCTTTTATTATTTCTGTTCTTGTGTATCTATACATTGCATTTTCTCACGTTTCAATTCTCTATGATAATGATCTTAATTACTGTGGGTCCTTCCATTTTATGTCTGTCTCCCTTTTTTTTCTTTGTTTTACACCATAGTTTCATAAATAGACTAACCCCATCTCATATATAACAAATAATATATATTATACATATAAGGTTTCTTTATTATGGTAATTACCAATAGTAGATCATTTAATTTTATTTGTTGAATTGAATAGGCACTTGGCTTATTTTTCGTTTTTATTTTTTCAATTCTACCACTTTATGGAAGTACGAAATGGTGACAAACTTATATAATATAATACATAGTCGGAGATTTGTTTTCTGTTTTGCTTTTTTTTTTTTTTTTTTTTAAATCTTGTCTATATTTAGTTTATTATATTTGAAGGTGTCTTAGTTTTTAAAGAATTCATTGGCGATGGGGGAAAGTTGGGCGAAAGTTGTGCGAAATGGAGGAGATTGTAATCACAGGTAACGCCAATATTTTGGCTATAACTATAAGGAATAAATACTCCTATATAACCCCAAAACCAGCATCATGACTCAATTACCTTTTGGCTTTTATATGGTTCACTAATCATTTATATGATCAAAATTTTAGTCTATTAACATTAAAAGAAACAAAAATTCTTTTAACGTTTTAATTGGAAAAAAGATACTTCTACTTATATGTATCATTCTAAATAAAAGGTACTTTGATTTGCGTACCATTTTAAACTTTACTTCCTCATCTCTTTTCCAAGAGCATGCGGAAGCCAATTAATTTGAAAGCTTTTATGAATATGAAAGTAAAGGAGAAGGGAGGGAAAGGTTTTGGAAAGAAACAAAAAAGAGGGGAAGGGTAAGGCAATGTAAATGGACTGGGCCTTTAACTTGGTCCATTCAAATTGTTGGGGTGGAATTTATGTTAGGTCGTTAGAGAGAGAAACGGGATGGTAGTGCATATGCTTTTGGTCTCATTTTGCGTATTCAATGTATCTTGGGTTTGTAACGGTGATGAAGTGCATAGATAAGGTAGAATTTTCTAAACACATATTTTTCTAACTTGATTCTGAAGTGACTAAACTCTTTAATTTCAACCCATCTTTCCTCTATTTTCTGAATTTTTAAATCGATTTTATATATTATATTTGTTATGAATCACTTAGACTCCAAAAATATAATATTTGTTATGATTTAGTTTTTAGACTCCAAAAATATTTAGTGCTAGATGAGCTCATGTAGGCAAAATAAAAAATATTTAATCTAAAATAGATGTCAGTATTTACTTAACAATATAATTTCAAATTGTTATTAAAAATATATATTATGTATTATTTAATTGTAAATTACCGAAATTGTTTATGATATAAAAAATTAAAAAATTTTAATATATATTTGTCAATACAATCTTGTTCAAAAACAAAATCATAGATATCCTACCTCATGTTAGGATCCATTGAAAACAAAATCTTATTTCAAATATGTAAGCTTCTAAAGAATATGAAAGTAAAAGAAAGGGAAATGGTTTCAAAAGAAAAAGAAAAAAAAAGGGAAGTCTAAGGCAACGTAAATGGACTAGGCTTTAACTTGGTCCATTGAATTTGTTGGAGTGGAATTTATGTTTAGGTAGTTAGAGAAAAAAGAGAAATTGGTAGGAATGACAGAAAAAACAAACTAGGTGGCTATTAGAATTTTGAAATGTCACGATAGTTGCTTACTCTATCATTAACCAAATCAAGATGTAGGTGATGAATGTGACGATAGAGTTGTATTGTTTATCATGAACTATATCATACCAAGAAGTTAAAAAGTAGCAGAGTAAAACGTTAATGAATGTCAATATAGAGTTGTGTGGTCTATCATAAACCGGATTTAAAATAAATAAATAAAATATCGAAGTTTAAAATATTCAAAAAAAATAAAAATAAAAGATTAAAACATCTAAAGAAAATATTGAAAATGGCTAATAAAAAAAATTCGTTTAAATTGGATTTGGGGATTTAAGACCTAAAAATTTACCAAATTAAATTCATTAAAAAAATTATGCATTAAACTCAAAATTCATCCAATTTCATATAACATTTTAATCACTTATATTCAAATGTATAGTGTGGTTATTTTTACATATTAACTAAAGTTAAAGATAAGAATAATTTTTTTTTAGATAATCGTCTTCAAGATTTACCTATCCATACACGAGCACGAATCTCGAAAAGGACATTTGTTGAGCAATAAATTTCGGTCAATTAAAT

mRNA sequence

ATGACTCTTGGATTCCAAGAAGCTGAGAAAAGGGGTGTTCCCAATCCCAACCATTTTCTTCATTTGCACCAACCCTCTCAAAATCATTACTATTCCATGGATGGATCCTCCAATAATTCCAATTTCGGTTCCGATTCCACCAATAGGATTACGTATTACGCCGCCGCAGCACAAGACCGGCGTAAGGTTGAGTATTTGCGATCTCTATCCCAGGGGACACCACGTCGATTGGTGCCGGCCGCGAGCTATTTAGGGGTTCTGCTCTGTTTGGCGGCGTCTTTGTTGATTCTTCCGTTGGTTCTACCGCCGCTGCCGCCGCCGCCTTTGATGCTGCTGCTGCTTCTTCCGATTGGGATTTTGGGAATGCTAATGGTGTTAGCGTTTATGCCTTCTAATGACACCAAGGATATAACCTCTTCCTCTCATACATATATGTAA

Coding sequence (CDS)

ATGACTCTTGGATTCCAAGAAGCTGAGAAAAGGGGTGTTCCCAATCCCAACCATTTTCTTCATTTGCACCAACCCTCTCAAAATCATTACTATTCCATGGATGGATCCTCCAATAATTCCAATTTCGGTTCCGATTCCACCAATAGGATTACGTATTACGCCGCCGCAGCACAAGACCGGCGTAAGGTTGAGTATTTGCGATCTCTATCCCAGGGGACACCACGTCGATTGGTGCCGGCCGCGAGCTATTTAGGGGTTCTGCTCTGTTTGGCGGCGTCTTTGTTGATTCTTCCGTTGGTTCTACCGCCGCTGCCGCCGCCGCCTTTGATGCTGCTGCTGCTTCTTCCGATTGGGATTTTGGGAATGCTAATGGTGTTAGCGTTTATGCCTTCTAATGACACCAAGGATATAACCTCTTCCTCTCATACATATATGTAA

Protein sequence

MTLGFQEAEKRGVPNPNHFLHLHQPSQNHYYSMDGSSNNSNFGSDSTNRITYYAAAAQDRRKVEYLRSLSQGTPRRLVPAASYLGVLLCLAASLLILPLVLPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDTKDITSSSHTYM
Homology
[Close]
BLAST of CsaV3_2G011320 vs. NCBI nr
Match: KGN61450.1 (hypothetical protein Csa_2G123610 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60
           MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60

Query: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL
Sbjct: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSNDTKDITSSSHTYM
Sbjct: 121 GMLMVLAFMPSNDTKDITSSSHTYM 145

[Close]
BLAST of CsaV3_2G011320 vs. NCBI nr
Match: XP_022974015.1 (ARGOS-like protein [Cucurbita maxima] >XP_022974016.1 ARGOS-like protein [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 3.4e-19
Identity = 99/145 (68.28%), Postives = 110/145 (75.86%), Query Frame = 0 

Query: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60
           M+LG  +A+  GVPNP+ F  +H XXXXXXXXXXXXX             T Y AA Q++
Sbjct: 1   MSLGLPDADTPGVPNPDDFRSMHXXXXXXXXXXXXXXAADSKPAFPSSNTTPYDAAPQEQ 60

Query: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           R +EY RSLSQGT RRLVPAA+YL VL+   XXXXXXXXXXXXXXXXXXXXXXXXPIGI+
Sbjct: 61  RMLEYTRSLSQGTARRLVPAATYLAVLVXXXXXXXXXXXXXXXXXXXXXXXXXXXPIGIM 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSN  KDITSS  TYM
Sbjct: 121 GMLMVLAFMPSNHAKDITSSHTTYM 145

[Close]
BLAST of CsaV3_2G011320 vs. NCBI nr
Match: XP_022930113.1 (ARGOS-like protein [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 94/145 (64.83%), Postives = 105/145 (72.41%), Query Frame = 0 

Query: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60
           M+LG  + +  GVPNP+ F+              XXXXXXXXXXXXXXX   + AA Q++
Sbjct: 1   MSLGLPDTDTPGVPNPDDFI-------------SXXXXXXXXXXXXXXXXXXHDAAPQEQ 60

Query: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           R +EY RSLSQGT RRLVPAA+YL VL+CLA       XXXXXXXXXXXXXXXXX IGIL
Sbjct: 61  RMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPXXXXXXXXXXXXXXXXXXIGIL 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSND KDI SSSHT M
Sbjct: 121 GMLMVLAFMPSNDAKDI-SSSHTSM 131

[Close]
BLAST of CsaV3_2G011320 vs. NCBI nr
Match: XP_023514167.1 (ARGOS-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 1.6e-16
Identity = 92/155 (59.35%), Postives = 102/155 (65.81%), Query Frame = 0 

Query: 1   MTLGFQEAEKRGVPNPNHFL----------HLHQXXXXXXXXXXXXXXXXXXXXXXXXXI 60
           M+LG  + +  GVPNP+ F+              XXXXXXXXXXX               
Sbjct: 1   MSLGLPDTDTPGVPNPDDFMXXXXXXXXXXXXXXXXXXXXXXXXXHAADSKPAFPSSSNA 60

Query: 61  TYYAAAAQDRRKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXX 120
           T   AA Q++R +EY RSLSQGT RRLVPAA+YL VL+CLA       XXXXXXXXXXXX
Sbjct: 61  TPSDAAPQEQRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPXXXXXXXXXXXX 120

Query: 121 XXXXXPIGILGMLMVLAFMPSNDTKDITSSSHTYM 146
           XXXXX IGILGMLMVLAFMPSND KDI SSSHTYM
Sbjct: 121 XXXXXXIGILGMLMVLAFMPSNDAKDI-SSSHTYM 154

[Close]
BLAST of CsaV3_2G011320 vs. TrEMBL
Match: tr|A0A0A0LHQ4|A0A0A0LHQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123610 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60
           MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLHLHQXXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQDR 60

Query: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120
           RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL
Sbjct: 61  RKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIGIL 120

Query: 121 GMLMVLAFMPSNDTKDITSSSHTYM 146
           GMLMVLAFMPSNDTKDITSSSHTYM
Sbjct: 121 GMLMVLAFMPSNDTKDITSSSHTYM 145

The following BLAST results are available for this feature:
BLAST of CsaV3_2G011320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61450.14.1e-41100.00hypothetical protein Csa_2G123610 [Cucumis sativus][more]
XP_022974015.13.4e-1968.28ARGOS-like protein [Cucurbita maxima] >XP_022974016.1 ARGOS-like protein [Cucurb... [more]
XP_022930113.11.2e-1664.83ARGOS-like protein [Cucurbita moschata][more]
XP_023514167.11.6e-1659.35ARGOS-like protein [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_2G011320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHQ4|A0A0A0LHQ4_CUCSA2.7e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123610 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0046622positive regulation of organ growth
Vocabulary: INTERPRO
TermDefinition
IPR037468ARGOS/ARL
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046622 positive regulation of organ growth
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G011320.1CsaV3_2G011320.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037468ARGOS/ARLPANTHERPTHR36023FAMILY NOT NAMEDcoord: 33..140
NoneNo IPR availablePANTHERPTHR36023:SF3ARGOS-LIKE PROTEIN-RELATEDcoord: 33..140

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G011320CSPI02G08930Wild cucumber (PI 183967)cpicucB080
CsaV3_2G011320Cucsa.266210Cucumber (Gy14) v1cgycucB408
CsaV3_2G011320CsGy2G009200Cucumber (Gy14) v2cgybcucB064
CsaV3_2G011320MELO3C008515Melon (DHL92) v3.5.1cucmeB135
CsaV3_2G011320Lsi09G010760Bottle gourd (USVL1VR-Ls)cuclsiB102
CsaV3_2G011320MELO3C008515.2Melon (DHL92) v3.6.1cucmedB128
CsaV3_2G011320Bhi12G001194Wax gourdcucwgoB132
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G011320Silver-seed gourdcarcucB0775
CsaV3_2G011320Cucurbita maxima (Rimu)cmacucB0329
CsaV3_2G011320Cucurbita moschata (Rifu)cmocucB0324
CsaV3_2G011320Cucurbita moschata (Rifu)cmocucB0414
CsaV3_2G011320Cucurbita pepo (Zucchini)cpecucB0146
CsaV3_2G011320Cucurbita pepo (Zucchini)cpecucB0194
CsaV3_2G011320Cucurbita pepo (Zucchini)cpecucB1046
CsaV3_2G011320Watermelon (Charleston Gray)cucwcgB159
CsaV3_2G011320Watermelon (97103) v1cucwmB189
CsaV3_2G011320Watermelon (97103) v2cucwmbB146