MELO3C008397 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C008397
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVQ motif protein
Locationchr3 : 5354864 .. 5355454 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTTCGAAATTCCCTCCAAGTGAGGGAACAAAACATCTGCTCCAAATCTCCAACAATTCTCGAAATATCAAGAAGCCGCCACTCCCGACGAAGAGGGCGCCGCCGGTAGTAAAGTACGAGTTGGAGCCGAGGATCATTAATGTACAAACCCCCACAGACTTCAAATACATTGTCCAACTCCTAACCGGCGACCCCAACCGTCCCCCGCCTGTATACCCCTGTAATTGTGACCACCACGACAATTATAATAATCCTCAACAGCCGGACGACCACCCACAGGGAATTCTGTCCCCGGCTCCCACCTCTCTTCGCCCGCTCGTTTCTCCCGGTGATTTTACTCCGTTTCCGTCGTCGTTTGATCAAGATTTCAACAGTTTTGATTTGCTTCAAGAATTGGAAGTAGAACCACCCACTTTATCTTTATCCCCTCCTGTTATTAATATTTCTCCATCGCCTTCCCCTCCTCCGTCGCCTTTGCCAGTACCGCAACCCATTTTCAGAGTTTCTCCGTCGATGTATACGGAAATTCCGCCGAGTTTCTACACCCAACAGCCTCCTATGTTCTTCCCACCCAACAGTAATTAA

mRNA sequence

ATGAGTTCTTCGAAATTCCCTCCAAGTGAGGGAACAAAACATCTGCTCCAAATCTCCAACAATTCTCGAAATATCAAGAAGCCGCCACTCCCGACGAAGAGGGCGCCGCCGGTAGTAAAGTACGAGTTGGAGCCGAGGATCATTAATGTACAAACCCCCACAGACTTCAAATACATTGTCCAACTCCTAACCGGCGACCCCAACCGTCCCCCGCCTGTATACCCCTGTAATTGTGACCACCACGACAATTATAATAATCCTCAACAGCCGGACGACCACCCACAGGGAATTCTGTCCCCGGCTCCCACCTCTCTTCGCCCGCTCGTTTCTCCCGGTGATTTTACTCCGTTTCCGTCGTCGTTTGATCAAGATTTCAACAGTTTTGATTTGCTTCAAGAATTGGAAGTAGAACCACCCACTTTATCTTTATCCCCTCCTGTTATTAATATTTCTCCATCGCCTTCCCCTCCTCCGTCGCCTTTGCCAGTACCGCAACCCATTTTCAGAGTTTCTCCGTCGATGTATACGGAAATTCCGCCGAGTTTCTACACCCAACAGCCTCCTATGTTCTTCCCACCCAACAGTAATTAA

Coding sequence (CDS)

ATGAGTTCTTCGAAATTCCCTCCAAGTGAGGGAACAAAACATCTGCTCCAAATCTCCAACAATTCTCGAAATATCAAGAAGCCGCCACTCCCGACGAAGAGGGCGCCGCCGGTAGTAAAGTACGAGTTGGAGCCGAGGATCATTAATGTACAAACCCCCACAGACTTCAAATACATTGTCCAACTCCTAACCGGCGACCCCAACCGTCCCCCGCCTGTATACCCCTGTAATTGTGACCACCACGACAATTATAATAATCCTCAACAGCCGGACGACCACCCACAGGGAATTCTGTCCCCGGCTCCCACCTCTCTTCGCCCGCTCGTTTCTCCCGGTGATTTTACTCCGTTTCCGTCGTCGTTTGATCAAGATTTCAACAGTTTTGATTTGCTTCAAGAATTGGAAGTAGAACCACCCACTTTATCTTTATCCCCTCCTGTTATTAATATTTCTCCATCGCCTTCCCCTCCTCCGTCGCCTTTGCCAGTACCGCAACCCATTTTCAGAGTTTCTCCGTCGATGTATACGGAAATTCCGCCGAGTTTCTACACCCAACAGCCTCCTATGTTCTTCCCACCCAACAGTAATTAA

Protein sequence

MSSSKFPPSEGTKHLLQISNNSRNIKKPPLPTKRAPPVVKYELEPRIINVQTPTDFKYIVQLLTGDPNRPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPFPSSFDQDFNSFDLLQELEVEPPTLSLSPPVINISPSPSPPPSPLPVPQPIFRVSPSMYTEIPPSFYTQQPPMFFPPNSN*
Homology
[Close]
BLAST of MELO3C008397 vs. TrEMBL
Match: A0A0A0KCP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338070 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 80/191 (41.88%), Postives = 99/191 (51.83%), Query Frame = 1 

Query: 6   FPPSEGTKHLLQISNNSRNIKKPPLPTKRAPPVV--KYELEPRIINVQTPTDFKYIVQLL 65
           +P  EG K +LQIS +S+ IKKPPL      PV+  KYE++P+IINV+T  DF YIVQLL
Sbjct: 3   YPGREGRKQVLQISKDSQTIKKPPLA-----PVIRYKYEMDPKIINVKTSVDFTYIVQLL 62

Query: 66  TGDPNRPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPFPSSFDQ 125
           TGDPN PPP+YPCNC     + +P                       P DFTP P+    
Sbjct: 63  TGDPNHPPPIYPCNCHQRRLHLSP----------------------PPNDFTPPPA---- 122

Query: 126 DFNSFDLLQELEVEPPTLSLSPPVINISPSPSPPPSPLPVPQPIFRVSPSMYTEIPPSFY 185
               + LL      PP  SL PP    +P+   PPSP       FR   ++ TEIPP F 
Sbjct: 123 -LPLYSLL-----NPP--SLPPP---SAPNFKVPPSP-------FR---TLNTEIPPRF- 139

Query: 186 TQQPPMFFPPN 195
               P F+PPN
Sbjct: 183 -NSTPQFYPPN 139

[Close]
BLAST of MELO3C008397 vs. TAIR10
Match: AT3G22120.1 (AT3G22120.1 cell wall-plasma membrane linker protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-07
Identity = 47/173 (27.17%), Postives = 65/173 (37.57%), Query Frame = 1 

Query: 27  KPPLPTKRAPPVVKYELEPRIINVQTPTDFKYIVQLLTGDPN-RPPPVYPCNCDHHDNYN 86
           KPP P    PP  K    P +     P   K   +  T  P+ +PP V P       +  
Sbjct: 53  KPPKPPAVKPPTPK---PPTVKPHPKPPTVKPHPKPPTVKPHPKPPTVKP------PHPK 112

Query: 87  NPQQPDDHPQGIL-----SPAPTSLRPLVSPGDFTPFPSSFDQDFNSFDLLQELEVEPPT 146
            P +P  HP+  +      P P++ +P   P   TP P +                +PP 
Sbjct: 113 PPTKPHPHPKPPIVKPPTKPPPSTPKPPTKPPPSTPKPPT---------------TKPPP 172

Query: 147 LSLSPPVINISPSPSPPPSPLPVPQPIFRVSPSMYTEIPPSFYTQQPPMFFPP 194
            +  PP     P+P PPP+P P P  +   +P+     PP   T  PP+  PP
Sbjct: 173 STPKPPHHKPPPTPCPPPTPTPTPPVVTPPTPTPPVITPP---TPTPPVVTPP 198

[Close]
BLAST of MELO3C008397 vs. NCBI nr
Match: gi|700192271|gb|KGN47475.1| (hypothetical protein Csa_6G338070 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-23
Identity = 80/191 (41.88%), Postives = 99/191 (51.83%), Query Frame = 1 

Query: 6   FPPSEGTKHLLQISNNSRNIKKPPLPTKRAPPVV--KYELEPRIINVQTPTDFKYIVQLL 65
           +P  EG K +LQIS +S+ IKKPPL      PV+  KYE++P+IINV+T  DF YIVQLL
Sbjct: 3   YPGREGRKQVLQISKDSQTIKKPPLA-----PVIRYKYEMDPKIINVKTSVDFTYIVQLL 62

Query: 66  TGDPNRPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPFPSSFDQ 125
           TGDPN PPP+YPCNC     + +P                       P DFTP P+    
Sbjct: 63  TGDPNHPPPIYPCNCHQRRLHLSP----------------------PPNDFTPPPA---- 122

Query: 126 DFNSFDLLQELEVEPPTLSLSPPVINISPSPSPPPSPLPVPQPIFRVSPSMYTEIPPSFY 185
               + LL      PP  SL PP    +P+   PPSP       FR   ++ TEIPP F 
Sbjct: 123 -LPLYSLL-----NPP--SLPPP---SAPNFKVPPSP-------FR---TLNTEIPPRF- 139

Query: 186 TQQPPMFFPPN 195
               P F+PPN
Sbjct: 183 -NSTPQFYPPN 139

The following BLAST results are available for this feature:
BLAST of MELO3C008397 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCP3_CUCSA2.5e-2341.88Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338070 PE=4 SV=1[more]
BLAST of MELO3C008397 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22120.12.2e-0727.17 cell wall-plasma membrane linker protein[more]
BLAST of MELO3C008397 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192271|gb|KGN47475.1|3.5e-2341.88hypothetical protein Csa_6G338070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008397T1MELO3C008397T1mRNA