CSPI06G18000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G18000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 16346257 .. 16346694 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTATCCTGGGAGGGAAGGAAGAAAACAAGTACTTCAAATCTCTAAGGATTCCCAAACTATCAAGAAGCCGCCACTGGCACCCGTCATAAGATACAAGTACGAGATGGACCCGAAGATCATTAATGTAAAAACTTCCGTAGACTTCACCTACATCGTCCAACTCCTCACTGGCGACCCCAATCATCCCCCACCTATATACCCCTGTAATTGTCACCAACGCCGCCTTCACCTCTCACCCCCTCCCAATGATTTTACTCCGCCCCCGGCATTACCCTTATACTCTCTTCTTAATCCTCCGCCGCTCCCCCCACCATCCGCTCCCAACTTCAAAGTTCCGCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCGCGTTTCAACAGTACTCCCCAGTTTTACCCACCCAATCATTTTCCTCCCAACAATTAA

mRNA sequence

ATGAGTTATCCTGGGAGGGAAGGAAGAAAACAAGTACTTCAAATCTCTAAGGATTCCCAAACTATCAAGAAGCCGCCACTGGCACCCGTCATAAGATACAAGTACGAGATGGACCCGAAGATCATTAATGTAAAAACTTCCGTAGACTTCACCTACATCGTCCAACTCCTCACTGGCGACCCCAATCATCCCCCACCTATATACCCCTGTAATTGTCACCAACGCCGCCTTCACCTCTCACCCCCTCCCAATGATTTTACTCCGCCCCCGGCATTACCCTTATACTCTCTTCTTAATCCTCCGCCGCTCCCCCCACCATCCGCTCCCAACTTCAAAGTTCCGCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCGCGTTTCAACAGTACTCCCCAGTTTTACCCACCCAATCATTTTCCTCCCAACAATTAA

Coding sequence (CDS)

ATGAGTTATCCTGGGAGGGAAGGAAGAAAACAAGTACTTCAAATCTCTAAGGATTCCCAAACTATCAAGAAGCCGCCACTGGCACCCGTCATAAGATACAAGTACGAGATGGACCCGAAGATCATTAATGTAAAAACTTCCGTAGACTTCACCTACATCGTCCAACTCCTCACTGGCGACCCCAATCATCCCCCACCTATATACCCCTGTAATTGTCACCAACGCCGCCTTCACCTCTCACCCCCTCCCAATGATTTTACTCCGCCCCCGGCATTACCCTTATACTCTCTTCTTAATCCTCCGCCGCTCCCCCCACCATCCGCTCCCAACTTCAAAGTTCCGCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCGCGTTTCAACAGTACTCCCCAGTTTTACCCACCCAATCATTTTCCTCCCAACAATTAA

Homology

[Close]

BLAST of CSPI06G18000 vs. TrEMBL
Match: A0A0A0KCP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338070 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-78
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MSYPGREGRKQVLQISKDSQTIKKPPLAPVIRYKYEMDPKIINVKTSVDFTYIVQLLTGD 60
           MSYPGREGRKQVLQISKDSQTIKKPPLAPVIRYKYEMDPKIINVKTSVDFTYIVQLLTGD
Sbjct: 1   MSYPGREGRKQVLQISKDSQTIKKPPLAPVIRYKYEMDPKIINVKTSVDFTYIVQLLTGD 60

Query: 61  PNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPPPLPPPSAPNFKVPPSPFRT 120
           PNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPP LPPPSAPNFKVPPSPFRT
Sbjct: 61  PNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPPSLPPPSAPNFKVPPSPFRT 120

Query: 121 LNTEIPPRFNSTPQFYPPNHFPPNN 146
           LNTEIPPRFNSTPQFYPPNHFPPNN
Sbjct: 121 LNTEIPPRFNSTPQFYPPNHFPPNN 145

[Close]

BLAST of CSPI06G18000 vs. NCBI nr
Match: gi|700192271|gb|KGN47475.1| (hypothetical protein Csa_6G338070 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 1


Query: 1   MSYPGREGRKQVLQISKDSQTIKKPPLAPVIRYKYEMDPKIINVKTSVDFTYIVQLLTGD 60
           MSYPGREGRKQVLQISKDSQTIKKPPLAPVIRYKYEMDPKIINVKTSVDFTYIVQLLTGD
Sbjct: 1   MSYPGREGRKQVLQISKDSQTIKKPPLAPVIRYKYEMDPKIINVKTSVDFTYIVQLLTGD 60

Query: 61  PNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPPPLPPPSAPNFKVPPSPFRT 120
           PNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPP LPPPSAPNFKVPPSPFRT
Sbjct: 61  PNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPPSLPPPSAPNFKVPPSPFRT 120

Query: 121 LNTEIPPRFNSTPQFYPPNHFPPNN 146
           LNTEIPPRFNSTPQFYPPNHFPPNN
Sbjct: 121 LNTEIPPRFNSTPQFYPPNHFPPNN 145

The following BLAST results are available for this feature:

BLAST of CSPI06G18000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G18000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCP3_CUCSA	1.2e-78	99.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338070 PE=4 SV=1	[more]

BLAST of CSPI06G18000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G18000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192271\|gb\|KGN47475.1\|	1.7e-78	99.31	hypothetical protein Csa_6G338070 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G18000.1	CSPI06G18000.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G18000	Cla013848	Watermelon (97103) v1	cpiwmB483
CSPI06G18000	Csa6G338070	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G18000	MELO3C008397	Melon (DHL92) v3.5.1	cpimeB467
CSPI06G18000	ClCG08G006560	Watermelon (Charleston Gray)	cpiwcgB534
CSPI06G18000	MELO3C008397.2	Melon (DHL92) v3.6.1	cpimedB459
CSPI06G18000	CsaV3_6G029620	Cucumber (Chinese Long) v3	cpicucB372
CSPI06G18000	Cla97C08G149370	Watermelon (97103) v2	cpiwmbB524
CSPI06G18000	Bhi04G001407	Wax gourd	cpiwgoB578
CSPI06G18000	CmoCh04G025480	Cucurbita moschata (Rifu)	cmocpiB771

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G18000	Cucurbita pepo (Zucchini)	cpecpiB201
CSPI06G18000	Cucurbita pepo (Zucchini)	cpecpiB464
CSPI06G18000	Cucurbita pepo (Zucchini)	cpecpiB794
CSPI06G18000	Bottle gourd (USVL1VR-Ls)	cpilsiB490
CSPI06G18000	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G18000	Silver-seed gourd	carcpiB0071
CSPI06G18000	Silver-seed gourd	carcpiB0872
CSPI06G18000	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G18000	Cucumber (Gy14) v1	cgycpiB077
CSPI06G18000	Cucurbita maxima (Rimu)	cmacpiB317
CSPI06G18000	Cucurbita maxima (Rimu)	cmacpiB781
CSPI06G18000	Cucurbita moschata (Rifu)	cmocpiB027
CSPI06G18000	Cucurbita moschata (Rifu)	cmocpiB308