CmoCh04G025480 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G025480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMKS1-like protein
LocationCmo_Chr04 : 18685046 .. 18685483 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCCGTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCAGCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCGCCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG

mRNA sequence

ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCCGTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCAGCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCGCCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG

Coding sequence (CDS)

ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCCGTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCAGCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCGCCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG
Homology
[Close]
BLAST of CmoCh04G025480 vs. TrEMBL
Match: A0A0A0KCP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338070 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-09
Identity = 58/141 (41.13%), Postives = 73/141 (51.77%), Query Frame = 1 

Query: 11  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQL 70
           YP  +  +Q LQISK S++IKKPPL P          KY++ PKII+VKT  +F YIVQL
Sbjct: 3   YPGREGRKQVLQISKDSQTIKKPPLAPVIRY------KYEMDPKIINVKTSVDFTYIVQL 62

Query: 71  LTGSPNHPPP-DPLDSPV----LSPRTPQSPPQPDPVDESVLNPPPCEEISIYDYDWEEP 130
           LTG PNHPPP  P +       LSP      P P     S+LNPP              P
Sbjct: 63  LTGDPNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPP----------SLPPP 122

Query: 131 SYP-IPIPPANFKNITSSYYP 146
           S P   +PP+ F+ + +   P
Sbjct: 123 SAPNFKVPPSPFRTLNTEIPP 127

[Close]
BLAST of CmoCh04G025480 vs. NCBI nr
Match: gi|700192271|gb|KGN47475.1| (hypothetical protein Csa_6G338070 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 58/141 (41.13%), Postives = 73/141 (51.77%), Query Frame = 1 

Query: 11  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQL 70
           YP  +  +Q LQISK S++IKKPPL P          KY++ PKII+VKT  +F YIVQL
Sbjct: 3   YPGREGRKQVLQISKDSQTIKKPPLAPVIRY------KYEMDPKIINVKTSVDFTYIVQL 62

Query: 71  LTGSPNHPPP-DPLDSPV----LSPRTPQSPPQPDPVDESVLNPPPCEEISIYDYDWEEP 130
           LTG PNHPPP  P +       LSP      P P     S+LNPP              P
Sbjct: 63  LTGDPNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPP----------SLPPP 122

Query: 131 SYP-IPIPPANFKNITSSYYP 146
           S P   +PP+ F+ + +   P
Sbjct: 123 SAPNFKVPPSPFRTLNTEIPP 127

The following BLAST results are available for this feature:
BLAST of CmoCh04G025480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCP3_CUCSA7.4e-0941.13Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338070 PE=4 SV=1[more]
BLAST of CmoCh04G025480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192271|gb|KGN47475.1|1.1e-0841.13hypothetical protein Csa_6G338070 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025480.1CmoCh04G025480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G025480Cla013848Watermelon (97103) v1cmowmB661
CmoCh04G025480Csa6G338070Cucumber (Chinese Long) v2cmocuB762
CmoCh04G025480MELO3C008397Melon (DHL92) v3.5.1cmomeB672
CmoCh04G025480ClCG08G006560Watermelon (Charleston Gray)cmowcgB680
CmoCh04G025480CSPI06G18000Wild cucumber (PI 183967)cmocpiB771
CmoCh04G025480MELO3C008397.2Melon (DHL92) v3.6.1cmomedB760
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G025480Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G025480Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G025480Cucurbita pepo (Zucchini)cmocpeB708
CmoCh04G025480Bottle gourd (USVL1VR-Ls)cmolsiB643
CmoCh04G025480Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G025480Cucumber (Gy14) v2cgybcmoB819
CmoCh04G025480Cucumber (Gy14) v2cgybcmoB950
CmoCh04G025480Silver-seed gourdcarcmoB0094
CmoCh04G025480Silver-seed gourdcarcmoB1121
CmoCh04G025480Cucumber (Chinese Long) v3cmocucB0902
CmoCh04G025480Cucumber (Chinese Long) v3cmocucB0911
CmoCh04G025480Watermelon (97103) v2cmowmbB760
CmoCh04G025480Watermelon (97103) v2cmowmbB770
CmoCh04G025480Wax gourdcmowgoB0865
CmoCh04G025480Cucurbita moschata (Rifu)cmocmoB029
CmoCh04G025480Cucurbita moschata (Rifu)cmocmoB262
CmoCh04G025480Cucurbita moschata (Rifu)cmocmoB367
CmoCh04G025480Cucumber (Gy14) v1cgycmoB0128
CmoCh04G025480Cucumber (Gy14) v1cgycmoB0137
CmoCh04G025480Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G025480Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G025480Cucumber (Chinese Long) v2cmocuB771
CmoCh04G025480Watermelon (Charleston Gray)cmowcgB605