Cla97C08G149370 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149370
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17733885 .. 17734487 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAACGATTCCCAAAAGATCAAGAAGCCGCCATTGCCGCCGAAAACGGCGGCGCGGTCGCCGGTCATAAGGTACGAGTACCAGAAGGACCGGATCATTAAAGTAAAAACCCCTGCAGACTTCGCCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCCAAACACCCCTGTACTTGTGACGACGACGATCCTCAGCCGCAGGCCCGCCCACAAGGGATTCTGTCCCCGACTCCCACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTTCGTCGCCGTCTCCTCCTACGCCGCCACCGCCGCCTTCGTCTGACCAAGAACTCTGCATTTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCAAACCCTATTGTTAATTCACCACCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCCAGTTTCAACACTCCTCTGCCTCCTCTGTTCTTCCCACCCAATCATTTTCCCCACAACAATTAA

mRNA sequence

ATGAGTAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAACGATTCCCAAAAGATCAAGAAGCCGCCATTGCCGCCGAAAACGGCGGCGCGGTCGCCGGTCATAAGGTACGAGTACCAGAAGGACCGGATCATTAAAGTAAAAACCCCTGCAGACTTCGCCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCCAAACACCCCTGTACTTGTGACGACGACGATCCTCAGCCGCAGGCCCGCCCACAAGGGATTCTGTCCCCGACTCCCACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTTCGTCGCCGTCTCCTCCTACGCCGCCACCGCCGCCTTCGTCTGACCAAGAACTCTGCATTTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCAAACCCTATTGTTAATTCACCACCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCCAGTTTCAACACTCCTCTGCCTCCTCTGTTCTTCCCACCCAATCATTTTCCCCACAACAATTAA

Coding sequence (CDS)

ATGAGTAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAACGATTCCCAAAAGATCAAGAAGCCGCCATTGCCGCCGAAAACGGCGGCGCGGTCGCCGGTCATAAGGTACGAGTACCAGAAGGACCGGATCATTAAAGTAAAAACCCCTGCAGACTTCGCCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCCAAACACCCCTGTACTTGTGACGACGACGATCCTCAGCCGCAGGCCCGCCCACAAGGGATTCTGTCCCCGACTCCCACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTTCGTCGCCGTCTCCTCCTACGCCGCCACCGCCGCCTTCGTCTGACCAAGAACTCTGCATTTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCAAACCCTATTGTTAATTCACCACCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTCGCCATTTCGTACGCTGAATACGGAAATTCCGCCCAGTTTCAACACTCCTCTGCCTCCTCTGTTCTTCCCACCCAATCATTTTCCCCACAACAATTAA

Protein sequence

MSSSWSSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSSPSPPTPPPPPSSDQELCIFDLLEEWAEPAALSSNPIVNSPPPPAPNFRVPPSPFRTLNTEIPPSFNTPLPPLFFPPNHFPHNN

Homology

[Close]

BLAST of Cla97C08G149370 vs. NCBI nr
Match: KGN47475.1 (hypothetical protein Csa_6G338070 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-24
Identity = 90/196 (45.92%), Postives = 101/196 (51.53%), Query Frame = 0


Query: 6   SSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKD-RIIKVKTPADFAYI 65
           S P RE GRK+VLQIS DSQ IKKPPL       +PVIRY+Y+ D +II VKT  DF YI
Sbjct: 2   SYPGRE-GRKQVLQISKDSQTIKKPPL-------APVIRYKYEMDPKIINVKTSVDFTYI 61

Query: 66  VQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSXXXXXXXX 125
           VQLLTGDPN PPP +PC C       Q R    LSP P    P   P A           
Sbjct: 62  VQLLTGDPNHPPPIYPCNCH------QRRLH--LSPPPNDFTP---PPA----------- 121

Query: 126 XXXXXXXELCIFDLLEEWAEPAALXXXXXXXXXXXXXPNFRVPPSPFRTLNTEIPXXXXX 185
                   L ++ LL   + P                PNF+VPPSPFRTLNTEIP     
Sbjct: 122 --------LPLYSLLNPPSLP------------PPSAPNFKVPPSPFRTLNTEIP--PRF 145

Query: 186 XXXXXXFPPNHFPHNN 201
                 +PPNHFP NN
Sbjct: 182 NSTPQFYPPNHFPPNN 145

[Close]

BLAST of Cla97C08G149370 vs. NCBI nr
Match: XP_022959600.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 11 EQGRKEVLQISNDSQKIKKPPLPPKTA-ARSPVIRYEYQKDRIIKVKTPADFAYIVQLLT 70
          E+  ++ LQIS  S+ IKKPPLPP +A  R  +I+Y+  K +II VKTPA+F YIVQLLT
Sbjct: 14 EKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKV-KPKIIHVKTPAEFKYIVQLLT 73

Query: 71 GDPNRPPP 78
          G PN PPP
Sbjct: 74 GSPNHPPP 80

[Close]

BLAST of Cla97C08G149370 vs. NCBI nr
Match: XP_020687141.1 (protein MKS1-like [Dendrobium catenatum] >PKU70304.1 Protein MKS1 [Dendrobium catenatum])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 14  RKEVLQISNDSQKIKKP-PLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDP 73
           R   L++S DS KI KP PLP +   R PVI Y     ++I V+ PA+F  +VQ LTG P
Sbjct: 17  RPSPLRVSKDSHKITKPSPLPQQ--QREPVIIYTI-SPKVIHVE-PANFMGLVQRLTG-P 76

Query: 74  NRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTS 117
           +R     P T      +P A   GIL P PTSLPP+  P AF S
Sbjct: 77  DRAAADPPTTSSAAPERPVAIRPGILLPVPTSLPPI--PPAFFS 113

[Close]

BLAST of Cla97C08G149370 vs. TrEMBL
Match: tr|A0A0A0KCP3|A0A0A0KCP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24
Identity = 90/196 (45.92%), Postives = 101/196 (51.53%), Query Frame = 0


Query: 6   SSPTREQGRKEVLQISNDSQKIKKPPLPPKTAARSPVIRYEYQKD-RIIKVKTPADFAYI 65
           S P RE GRK+VLQIS DSQ IKKPPL       +PVIRY+Y+ D +II VKT  DF YI
Sbjct: 2   SYPGRE-GRKQVLQISKDSQTIKKPPL-------APVIRYKYEMDPKIINVKTSVDFTYI 61

Query: 66  VQLLTGDPNRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTSXXXXXXXX 125
           VQLLTGDPN PPP +PC C       Q R    LSP P    P   P A           
Sbjct: 62  VQLLTGDPNHPPPIYPCNCH------QRRLH--LSPPPNDFTP---PPA----------- 121

Query: 126 XXXXXXXELCIFDLLEEWAEPAALXXXXXXXXXXXXXPNFRVPPSPFRTLNTEIPXXXXX 185
                   L ++ LL   + P                PNF+VPPSPFRTLNTEIP     
Sbjct: 122 --------LPLYSLLNPPSLP------------PPSAPNFKVPPSPFRTLNTEIP--PRF 145

Query: 186 XXXXXXFPPNHFPHNN 201
                 +PPNHFP NN
Sbjct: 182 NSTPQFYPPNHFPPNN 145

[Close]

BLAST of Cla97C08G149370 vs. TrEMBL
Match: tr|A0A2I0W3R9|A0A2I0W3R9_9ASPA (Protein MKS1 OS=Dendrobium catenatum OX=906689 GN=MKS1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 47/104 (45.19%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 14  RKEVLQISNDSQKIKKP-PLPPKTAARSPVIRYEYQKDRIIKVKTPADFAYIVQLLTGDP 73
           R   L++S DS KI KP PLP +   R PVI Y     ++I V+ PA+F  +VQ LTG P
Sbjct: 17  RPSPLRVSKDSHKITKPSPLPQQ--QREPVIIYTI-SPKVIHVE-PANFMGLVQRLTG-P 76

Query: 74  NRPPPKHPCTCDDDDPQPQARPQGILSPTPTSLPPLFSPDAFTS 117
           +R     P T      +P A   GIL P PTSLPP+  P AF S
Sbjct: 77  DRAAADPPTTSSAAPERPVAIRPGILLPVPTSLPPI--PPAFFS 113

The following BLAST results are available for this feature:

BLAST of Cla97C08G149370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47475.1	2.8e-24	45.92	hypothetical protein Csa_6G338070 [Cucumis sativus]	[more]
XP_022959600.1	1.1e-09	58.82	extensin-like [Cucurbita moschata]	[more]
XP_020687141.1	4.2e-04	45.19	protein MKS1-like [Dendrobium catenatum] >PKU70304.1 Protein MKS1 [Dendrobium ca...	[more]

BLAST of Cla97C08G149370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCP3\|A0A0A0KCP3_CUCSA	1.9e-24	45.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1	[more]
tr\|A0A2I0W3R9\|A0A2I0W3R9_9ASPA	2.8e-04	45.19	Protein MKS1 OS=Dendrobium catenatum OX=906689 GN=MKS1 PE=4 SV=1	[more]

BLAST of Cla97C08G149370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149370 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149370.1	Cla97C08G149370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149370	Cla013848	Watermelon (97103) v1	wmwmbB100
Cla97C08G149370	Csa6G338070	Cucumber (Chinese Long) v2	cuwmbB498
Cla97C08G149370	MELO3C008397	Melon (DHL92) v3.5.1	mewmbB308
Cla97C08G149370	ClCG08G006560	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149370	CSPI06G18000	Wild cucumber (PI 183967)	cpiwmbB524
Cla97C08G149370	MELO3C008397.2	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G149370	CsaV3_6G029620	Cucumber (Chinese Long) v3	cucwmbB514
Cla97C08G149370	Bhi04G001407	Wax gourd	wgowmbB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149370	Silver-seed gourd	carwmbB0063
Cla97C08G149370	Silver-seed gourd	carwmbB0862
Cla97C08G149370	Cucumber (Gy14) v2	cgybwmbB474
Cla97C08G149370	Cucumber (Gy14) v1	cgywmbB076
Cla97C08G149370	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149370	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149370	Cucurbita moschata (Rifu)	cmowmbB026
Cla97C08G149370	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149370	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149370	Cucumber (Chinese Long) v3	cucwmbB517
Cla97C08G149370	Bottle gourd (USVL1VR-Ls)	lsiwmbB445