MELO3C008192 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008192
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcription factor tfiiic, tau55-like protein, putative
Location	chr3 : 1759236 .. 1761399 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGCTACAATTGACTCCGCCTCTAATGCCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATACGTTCTATCTGTATGTTTCTGACCTACTCTAATTATCAAGTAATGAAATTTTTTCTACGAGCTAATTCTTGATCTTTAATTACTTGCTTTCAAGTTACCGTTGTTAAATTAAAATGAGTTGTTTATTAATTTCCCCTCTAAGTAGTTAAGAATAACATATTTGAATATTTAAGAATTAGACTTTAACAAGCATCAGGGGTTATTAAATTTTTATTTATGAAAGTGACGAATGCATCTACTGTAAGTTTGAAAATAAACTTTGCACTGTTATATGCTTATATGTAATCTTTGGATTAATGTTGTGTAAATTTTGACACGAGACTTAGTAGAAACTAATGTAATCTTAGGATTGTAGACCATTGTGTACTCCTTGTGAACCTAGTGTAAAGTAGTTCAACACTAGTGATAGTGTTAACCAATCTCTGTATGCAAGCATTATTGCAGACATGCTGCTGACTGCAGTAGGCCATATATAGTGTAGGATTACTGTGTAGGTTTACAAGCAAACCTAGGGTAGAGCATTGGGTTGTCATAGAAAGTATTATGACATACTTGAAGAAAACCTAGAACCTAGGATTGTATTAGCATGATATTCTGAACTGTATGAAAAAGGTTGAACTTAGTTCTTAATGAGGTGTTTAACTTTATTTTGATGCCCAAACGTTCACACCCAAACCTTATGCATAAATTCATGAATTCTATGGTGCTTAACTTGTTGTTTTGATGTTTTTAAATGGAATATTTCACAATATGTTCATGTACACGAAAAAGATTTAATTTTATAATAAAAAAATAATGTCTCCTCAATGTGTCGTACCCTACTTTTTCGAAAATTGGCATGTTGTGTCGGTGTCCATGTTTCCTAGCATATAGACGTTCGTAACTTGGTTTGATTTGAGAGAAGAGAAAATTACATTACTTGTGATGACATCTATTCAAAATAAGGTTATACTTTAACCCTGTATGCCTATATAAAAGAGAAGTAGTTAACTAGTAAATAACCTTATTACAAATTTTTTCCAACCAGGAGTAACCCCCTCCACTAGGTTTTCATGGTAGACCGATACACAAGTTGTGTATTCCTAGAGTATCGTGTGAGGGTTTGGTTCGTTTATGATTACTACGTGCAACAAGCTTTAATGAAAAAGAATATATTGTGTAATTGGGCAAGCCTTCTGTTAATTTGTATGCTTTATGTGAATGTTGATTCATTTCTTTTCCAGGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGGTAAGTTGTTAATAAGATACAAGCTTTTACCTAGTGTACTTCAGCAGAACCATAATGTGTAGTCTCTTGGCATTATTGTGTTTACCATTGTTGTTAAGAGTACCTAAATTTTTACCATTTAAGGATAAGCTTCAAATGTATAGAAATTTATGTTAATACACAATGTAAATGATATTGATCTTACTCTCTTATCTTTTGGTTTGATTCAAGGCTGTTGTAGTCTATATTTTGTGATTAACAGGCATTTCTATCAAACTTCCATATAAAAATATTTGTTTGAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACCATAGGCACATGTCTTACCTTTGCGGAAGGTGAGCAAATTTAAAGAAAACGTAGCCGTTTGATTTTAAAGCAAGGTTTCAAATTGTTCTTTAAGACTTTGCATAGATATTGGAAAACCAATGTCTTACACTGAATTCATGTCGTCTAATGTAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATGGTTGCTCGAGAGAAGCAGCTGAACCAAAACAAGCTACCAGAAAGGAGTTAAAGGCCACTGCCTGTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGATGTTCCAAGCCCAATATCTTAGTGCACTAAAGAGAATAATGTTATTTCATATTTGTATATATTGAGGTGTAAGTTTTATGTATAGTTTAGATGCAATGGGACTGATAAGGTAAGAATTTAGATGAGTTGTGAGTACTCATCCAAGTAAAGAGCACAGTGAAAGAGCTA

mRNA sequence

ATGGAAAAAGCTACAATTGACTCCGCCTCTAATGCCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATACGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGTCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATGGTTGCTCGAGAGAAGCAGCTGAACCAAAACAAGCTACCAGAAAGGAGTTAAAGGCCACTGCCTGTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGATGTTCCAAGCCCAATATCTTAGTGCACTAAAGAGAATAATGTTATTTCATATTTGTATATATTGAGGTGTAAGTTTTATGTATAGTTTAGATGCAATGGGACTGATAAGGTAAGAATTTAGATGAGTTGTGAGTACTCATCCAAGTAAAGAGCACAGTGAAAGAGCTA

Coding sequence (CDS)

ATGGAAAAAGCTACAATTGACTCCGCCTCTAATGCCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATACGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGTCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACAAATGGTTGCTCGAGAGAAGCAGCTGAACCAAAACAAGCTACCAGAAAGGAGTTAAAGGCCACTGCCTGTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGATGTTCCAAGCCCAATATCTTAG

Protein sequence

MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSDVPSPIS*

Homology

[Close]

BLAST of MELO3C008192 vs. TrEMBL
Match: A0A0A0LML8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.5e-58
Identity = 117/128 (91.41%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60
           MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EP+QAT+KELK  ACVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 121 SDVPSPIS 129
           SDVPS IS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of MELO3C008192 vs. TrEMBL
Match: A0A061F685_THECC (Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 9.1e-27
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 13  EEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE 72
           E EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K K+IGEYEETIGTCL F+E
Sbjct: 16  ESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFSE 75

Query: 73  EEV-PVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKFKLLDSD 123
           +E  PVV EE  PSE N  S +   +P QA RK++K  A +HKILKF+LL  D
Sbjct: 76  DEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFRLLLDD 128

[Close]

BLAST of MELO3C008192 vs. TrEMBL
Match: A0A072VBF0_MEDTR (Transcription factor tfiiic, tau55-like protein, putative OS=Medicago truncatula GN=MTR_2g079590 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 7   DSASNAEEEYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGT 66
           ++ SN E+EYVLLDL  V  L+DIPPNA YVL GLDT+NP+L I DKFK+IGEYEETIGT
Sbjct: 4   NATSNDEDEYVLLDLDGVYGLIDIPPNANYVLKGLDTLNPILIIDDKFKLIGEYEETIGT 63

Query: 67  CLTFAEEEVPVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKFKL 119
           C+ F+E+  PVV +E  PSETN  S     +  Q   K+++    +HK+LKFKL
Sbjct: 64  CIAFSEQHAPVVHKETGPSETNLFSGTRLIDSSQPPTKQVEPVCQLHKVLKFKL 117

[Close]

BLAST of MELO3C008192 vs. TrEMBL
Match: A0A0B0NSN1_GOSAR (General transcription factor 3C polypeptide 6 OS=Gossypium arboreum GN=F383_22055 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.7e-26
Identity = 75/128 (58.59%), Postives = 87/128 (67.97%), Query Frame = 1


Query: 1   MEKATIDSASNAEE-EYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGE 60
           MEK   D     E+ EYVLLDL  V   +DIPPNAPY LSGLDTMNP+L I  K K+IGE
Sbjct: 1   MEKNKDDDYGEEEDSEYVLLDLEAVRGQIDIPPNAPYTLSGLDTMNPILIIDKKVKLIGE 60

Query: 61  YEETIGTCLTFAEEEV-PVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKF 120
           YEETIGTC  F+E+E  PVV EE  PSE N  S +   +P QA RK++K  A + KILKF
Sbjct: 61  YEETIGTCFVFSEDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVARLRKILKF 120

Query: 121 K-LLDSDV 124
           + LLD DV
Sbjct: 121 RLLLDEDV 128

[Close]

BLAST of MELO3C008192 vs. TrEMBL
Match: A0A0D2TQB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319700 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.7e-26
Identity = 75/128 (58.59%), Postives = 87/128 (67.97%), Query Frame = 1


Query: 1   MEKATIDSASNAEE-EYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGE 60
           MEK   D     E+ EYVLLDL  V   +DIPPNAPY LSGLDTMNP+L I  K K+IGE
Sbjct: 1   MEKNKDDDYGEEEDSEYVLLDLEAVRGQIDIPPNAPYTLSGLDTMNPILIIDKKVKLIGE 60

Query: 61  YEETIGTCLTFAEEEV-PVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKF 120
           YEETIGTC  F+E+E  PVV EE  PSE N  S +   +P QA RK++K  A + KILKF
Sbjct: 61  YEETIGTCFVFSEDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVARLQKILKF 120

Query: 121 K-LLDSDV 124
           + LLD DV
Sbjct: 121 RLLLDEDV 128

[Close]

BLAST of MELO3C008192 vs. TAIR10
Match: AT3G15420.1 (AT3G15420.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-20
Identity = 54/113 (47.79%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE 72
           EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  K K++GEY ETIGTCL F+E
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSE 61

Query: 73  EEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKL--LDSD 123
           +E     E   P                 +K ++  A +HKILKF+L  LD+D
Sbjct: 62  KEEVSASENQMPH----------------KKIIEPVAKLHKILKFRLAALDND 98

[Close]

BLAST of MELO3C008192 vs. TAIR10
Match: AT1G80745.1 (AT1G80745.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = 1


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE 72
           E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K K++GEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 73  EEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLDSD 123
           +                      + +   +K ++  A +HKILKF+L   D
Sbjct: 62  K---------------------GDNQTPQKKTVEPVAKLHKILKFRLAPLD 91

[Close]

BLAST of MELO3C008192 vs. NCBI nr
Match: gi|659081450|ref|XP_008441338.1| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60
           MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120

Query: 121 SDVPSPIS 129
           SDVPSPIS
Sbjct: 121 SDVPSPIS 128

[Close]

BLAST of MELO3C008192 vs. NCBI nr
Match: gi|778673260|ref|XP_004138617.2| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-58
Identity = 117/128 (91.41%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60
           MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EP+QAT+KELK  ACVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 121 SDVPSPIS 129
           SDVPS IS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of MELO3C008192 vs. NCBI nr
Match: gi|747100477|ref|XP_011098327.1| (PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum indicum])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-27
Identity = 73/114 (64.04%), Postives = 88/114 (77.19%), Query Frame = 1


Query: 13  EEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE 72
           EEEYVLLDL  VS  + IPPNAPYVLSGLDT+NP+LTI DK K+IGEYEETIGTCL F E
Sbjct: 19  EEEYVLLDLDGVSDHVQIPPNAPYVLSGLDTLNPILTIDDKIKLIGEYEETIGTCLVFNE 78

Query: 73  -EEVPVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKFKL-LDSD 123
            +E P+V EEA PSETN  S R   +PKQ   K++ A A ++K+LKF+L L++D
Sbjct: 79  SDEAPIVHEEAGPSETNLFSGRCIVDPKQTPAKQVNAVATLNKVLKFRLFLEAD 132

[Close]

BLAST of MELO3C008192 vs. NCBI nr
Match: gi|590608770|ref|XP_007021355.1| (Transcription factor TFIIIC, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-26
Identity = 71/113 (62.83%), Postives = 82/113 (72.57%), Query Frame = 1


Query: 13  EEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE 72
           E EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K K+IGEYEETIGTCL F+E
Sbjct: 16  ESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFSE 75

Query: 73  EEV-PVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKFKLLDSD 123
           +E  PVV EE  PSE N  S +   +P QA RK++K  A +HKILKF+LL  D
Sbjct: 76  DEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFRLLLDD 128

[Close]

BLAST of MELO3C008192 vs. NCBI nr
Match: gi|922392638|ref|XP_013464728.1| (transcription factor tfiiic, tau55-like protein, putative [Medicago truncatula])

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-26
Identity = 65/114 (57.02%), Postives = 82/114 (71.93%), Query Frame = 1


Query: 7   DSASNAEEEYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGT 66
           ++ SN E+EYVLLDL  V  L+DIPPNA YVL GLDT+NP+L I DKFK+IGEYEETIGT
Sbjct: 4   NATSNDEDEYVLLDLDGVYGLIDIPPNANYVLKGLDTLNPILIIDDKFKLIGEYEETIGT 63

Query: 67  CLTFAEEEVPVVEEEAQPSETNGCS-REAAEPKQATRKELKATACVHKILKFKL 119
           C+ F+E+  PVV +E  PSETN  S     +  Q   K+++    +HK+LKFKL
Sbjct: 64  CIAFSEQHAPVVHKETGPSETNLFSGTRLIDSSQPPTKQVEPVCQLHKVLKFKL 117

The following BLAST results are available for this feature:

BLAST of MELO3C008192 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LML8_CUCSA	1.5e-58	91.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1	[more]
A0A061F685_THECC	9.1e-27	62.83	Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384...	[more]
A0A072VBF0_MEDTR	2.6e-26	57.02	Transcription factor tfiiic, tau55-like protein, putative OS=Medicago truncatula...	[more]
A0A0B0NSN1_GOSAR	7.7e-26	58.59	General transcription factor 3C polypeptide 6 OS=Gossypium arboreum GN=F383_2205...	[more]
A0A0D2TQB4_GOSRA	7.7e-26	58.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319700 PE=4 SV=1	[more]

BLAST of MELO3C008192 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15420.1	4.3e-20	47.79	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	1.5e-17	43.24	Transcription factor TFIIIC, tau55-related protein	[more]

BLAST of MELO3C008192 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081450\|ref\|XP_008441338.1\|	2.4e-65	100.00	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]	[more]
gi\|778673260\|ref\|XP_004138617.2\|	2.2e-58	91.41	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus]	[more]
gi\|747100477\|ref\|XP_011098327.1\|	1.2e-27	64.04	PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum ind...	[more]
gi\|590608770\|ref\|XP_007021355.1\|	1.3e-26	62.83	Transcription factor TFIIIC, putative isoform 1 [Theobroma cacao]	[more]
gi\|922392638\|ref\|XP_013464728.1\|	3.8e-26	57.02	transcription factor tfiiic, tau55-like protein, putative [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019481	TFIIIC_tau55-rel

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0042128	nitrate assimilation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0010477	response to sulfur dioxide
biological_process	GO:0006790	sulfur compound metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0030151	molybdenum ion binding
molecular_function	GO:0008482	sulfite oxidase activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008192T1	MELO3C008192T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019481	Transcription factor TFIIIC, tau55-related	PFAM	PF10419	TFIIIC_sub6	coord: 35..69 score: 1.2
None	No IPR available	PANTHER	PTHR21860	UNCHARACTERIZED	coord: 13..118 score: 1.0
None	No IPR available	PANTHER	PTHR21860:SF2	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 6	coord: 13..118 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008192	Csa2G406680	Cucumber (Chinese Long) v2	cumeB115
MELO3C008192	Cla006507	Watermelon (97103) v1	mewmB328
MELO3C008192	ClCG11G007090	Watermelon (Charleston Gray)	mewcgB272
MELO3C008192	Cla97C11G214030	Watermelon (97103) v2	mewmbB282
MELO3C008192	Bhi04G001985	Wax gourd	mewgoB341
MELO3C008192	CSPI02G25630	Wild cucumber (PI 183967)	cpimeB116
MELO3C008192	Cucsa.087730	Cucumber (Gy14) v1	cgymeB100
MELO3C008192	CmaCh15G000780	Cucurbita maxima (Rimu)	cmameB267
MELO3C008192	CmoCh15G000790	Cucurbita moschata (Rifu)	cmomeB258
MELO3C008192	Lsi03G003960	Bottle gourd (USVL1VR-Ls)	lsimeB259
MELO3C008192	Cp4.1LG13g11310	Cucurbita pepo (Zucchini)	cpemeB167
MELO3C008192	CsGy2G025260	Cucumber (Gy14) v2	cgybmeB099
MELO3C008192	Carg24277	Silver-seed gourd	carmeB0983
MELO3C008192	CsaV3_2G034140	Cucumber (Chinese Long) v3	cucmeB121

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C008192	Cucurbita maxima (Rimu)	cmameB679
MELO3C008192	Cucurbita moschata (Rifu)	cmomeB671
MELO3C008192	Cucurbita pepo (Zucchini)	cpemeB400
MELO3C008192	Silver-seed gourd	carmeB0023