ClCG11G007090 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G007090
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transcription factor TFIIIC, tau55-related protein LENGTH=107
Location	CG_Chr11 : 7916758 .. 7919363 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTAAGGCCGTCCTTCAAACCCCTTCAACCTTTCTCTCTCTACCCACTACGAACAAAAAAGACGTCGCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCTCCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGGTAAGGCCCTCCATCCCCATTCTTTCTCTTTCTCTTTCTGTTTCTCAATCTCATCCTGTTTGCAGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCGCCTGAGCTCTGACTAATTTCAAATTTTTATTTGATATTGCTTAGGTATCAAATCAAATCACAACTGATTTCAAATTCCTTAGGTTTTTTTTTCTCCTTTGCATTTAAACACACTGATTTGGAATTCTACCAAAATCAGCGGTTACAAACAGGGGTTAGCCAAAAGCTTTATTTGATATTGTTGAGCCGCTGACAAATTCAATTTATTTTTCAGAGATATCTCTAAGGAACATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGTATGTTTCTGGCCTACTCTAAATCTTGATATTTAATTACTTGCTTTCAAGTTACCGTTGTTAAATTAAAAATGAGATGTTCATTAATTTCCACTTTGAGCAGTTAAGAATACGAACATTTGTGTATTTAAGAATTAGACTTTACCAGGTAGAAGAATAATCTCCATTACTTTCAATACATGTATTATACAGAAATTTCATTGTACAATAGTCCATATATGATATATTTAATGGCATATTTAGGGATACTTATTGATATTCTTTGGAACAAATTGAACGCCATATGTTATGAGAATTAGTGGGGAGCTAAGCCAAGAAAGGGGTTGTTTTATTGATTTTCTAGAAAATGAATGCAAAAGGGAAACTCCACCTTTATAAGGAGGTTAGATTTCAGGGGAATGAGACTGAATGGCATTAGGTTCCATGAAGTTAATATGAAATAACCTTAGGTAAAAGCTGATCCTAACAACTCATCAACCAATTATTTTTTTCACACACCTCAAATTTTGCAAGGGCCAATCTCCTTTTTCTTACGCTTACCATATACTTCTACATACCCCCAGGAGGTCTGCTGTTCCTTAAGTGCACCATGGCTAATTCTCCAACGTCAGAATCCTTGTTACATTGCTTCCTGTTTGCTAATGCATATTGTACATTAGCCTTAGTGAAACAGCCATACCAAACTAAGTTGAAGGAAGGGGCATTTACTTTTTAGCACAAGGACACAGTTGTACAACCTATAGAACAGATCTTGTTCAATAAGGTCGTAGGGAGGGGCATCTAATTGGTTTAAAAAACAATGAATGCAAGTTACAATACATAAGGGCAAGCTCCACCTTCATGAATTGGTTTGATTTGAGAAAAAGAGAGCAACTTACCTTAGTTATCATGACAACTACTCAAAATAAGGTTATACTTTAACCCCGTATGCCTATATAAAGAGAAGTAATTAATTAGTAAGGTAATAACTTTATCACAATTTTTTTCCAACCATGAGTACTCCCTCTACTAGGTTTCAGTGCTAGACTGATGCACAACTTATATTTTCCTGGAGTATCGTGTAAGGGTTTAATTGGTTTTTGATTTTTACATGCAGCGAGCTTTAAGAGAAAAAGAATTATGTATGTAGTTGGGCAAGCATTCTGTTAAACTGTACTGTTTATGTGAATTTTGATTAATTTGTTTTGCAGGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGGTAAGTTGTTAATAAGATACAAACTCTATACCTAGTGTACTGCAGCAGAACCATAATATGTCGTCTCTTAGCATTAATGCTCACAATTTAAATGACATTGATCTTACTCTCTTATCTTTTGGTTTGGGGCAACTGACAAGGCTGTTGTAGACTATCTTTTGTGATTAACAGGCAATTCTATATAACTTGCATATTAAAATATTTTTTTTAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGGTGAGCAAATTTAAATGAAAAGAAGTCATTTGATTCCTAAACTTTAAAGCAAGTTTTCAATTTGTTCTTTAAGACTTTGCATATACTGTTTGAATATTTCAATAGAAATTGGAAAACCATTGTCTTACACTGAAGTGTCATGTTCCCTAATGTAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAGTTCACTAAAGAGACTAATGTTATCTGTATATATAACTTTAGCATGCTTCTAAATAAACCTTTTGAAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTGTCTATAGTTAGCTGCAATGGACAGAC

mRNA sequence

AAGGTAAGGCCGTCCTTCAAACCCCTTCAACCTTTCTCTCTCTACCCACTACGAACAAAAAAGACGTCGCCGCCTTCTTCCGTCCGACCGCTGCCCGCCTCTACTCATTCCTCCGTCTAACTTTCGACCGCCGTCTCCGACCGATCATCCGCCGCACCACTTAGCAGCCCAGCCACCACGCAACTCCTCCGCCTCCGACCTTCCGTCGTCGCCACGCTACCGCCTGAGCTCTGACTAATTTCAAATTTTTATTTGATATTGCTTAGAGATATCTCTAAGGAACATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAGTTCACTAAAGAGACTAATGTTATCTGTATATATAACTTTAGCATGCTTCTAAATAAACCTTTTGAAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTGTCTATAGTTAGCTGCAATGGACAGAC

Coding sequence (CDS)

ATGGAGAAAGCTACAATTGATTCTACCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACTATAGGCACATGTCTTACCTTCGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAGTCGTCGCTCGAGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAAGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGCTCCAAACTCAATATCTTAG

Protein sequence

MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLDSAAPNSIS

Homology

[Close]

BLAST of ClCG11G007090 vs. TrEMBL
Match: A0A0A0LML8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-54
Identity = 113/128 (88.28%), Postives = 116/128 (90.62%), Query Frame = 1


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSET R SRE VEP+QA +KELK VA VHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           S  P+SIS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of ClCG11G007090 vs. TrEMBL
Match: A0A061F685_THECC (Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-31
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 12  GEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFA 71
           GE EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K+K+IGEYEETIGTCL F+
Sbjct: 15  GESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFS 74

Query: 72  EEEV-PVVEEEAGPSETSRRS-REAVEPKQAPRKELKPVASVHKILKFKLL 120
           E+E  PVV EE GPSE +  S +  ++P QAPRK++KPVA +HKILKF+LL
Sbjct: 75  EDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFRLL 125

[Close]

BLAST of ClCG11G007090 vs. TrEMBL
Match: A0A067G3D4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032469mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1


Query: 11  DGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTF 70
           D EEE+ LLDL  +S   DIPPNAPYVLSGLDT+NPVL I +KIK+IGEYEETIGTC  F
Sbjct: 14  DDEEEFALLDLDVLSGNFDIPPNAPYVLSGLDTLNPVLVIDNKIKLIGEYEETIGTCFAF 73

Query: 71  AEEEVPVVEEEAGPSETSRRSREA-VEPKQAPRKELKPVASVHKILKFKLL 120
           AE+  P+V EEAG SE +  S +  ++  QAPRK++KPVA +HKILKF++L
Sbjct: 74  AEDAAPMVHEEAGSSELNLFSGKCIIDSNQAPRKQVKPVARLHKILKFRIL 124

[Close]

BLAST of ClCG11G007090 vs. TrEMBL
Match: W9R8U5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025663 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 1


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEY 60
           ME  + +   + E+EYVLLDL  VS  LDIPPNAPYVLSGLDT NPVL I DK+K+IG+Y
Sbjct: 1   MEANSANQVKEDEDEYVLLDLDSVSGQLDIPPNAPYVLSGLDTPNPVLIIGDKLKLIGDY 60

Query: 61  EETIGTCLTFAEEE-VPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKL 119
           EETIGTCL F E++  PVV EE GP       +  ++PKQ+PRK++KP+ S+ KILKF+L
Sbjct: 61  EETIGTCLFFTEKDNGPVVHEETGPEANLFSGKCIIDPKQSPRKQVKPMTSLKKILKFRL 120

[Close]

BLAST of ClCG11G007090 vs. TrEMBL
Match: A0A072VBF0_MEDTR (Transcription factor tfiiic, tau55-like protein, putative OS=Medicago truncatula GN=MTR_2g079590 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 7   DSTSDGEEEYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGT 66
           ++TS+ E+EYVLLDL  V  L+DIPPNA YVL GLDT+NP+L I DK K+IGEYEETIGT
Sbjct: 4   NATSNDEDEYVLLDLDGVYGLIDIPPNANYVLKGLDTLNPILIIDDKFKLIGEYEETIGT 63

Query: 67  CLTFAEEEVPVVEEEAGPSETSRRS-REAVEPKQAPRKELKPVASVHKILKFKLLDSAA 124
           C+ F+E+  PVV +E GPSET+  S    ++  Q P K+++PV  +HK+LKFKL   +A
Sbjct: 64  CIAFSEQHAPVVHKETGPSETNLFSGTRLIDSSQPPTKQVEPVCQLHKVLKFKLSPDSA 122

[Close]

BLAST of ClCG11G007090 vs. TAIR10
Match: AT3G15420.1 (AT3G15420.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAE 72
           EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK++GEY ETIGTCL F+E
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSE 61

Query: 73  EEVPVVEEEAGPSETSRRSREAVEPKQAPRKE-LKPVASVHKILKFKL 119
                 +EE   SE            Q P K+ ++PVA +HKILKF+L
Sbjct: 62  ------KEEVSASE-----------NQMPHKKIIEPVAKLHKILKFRL 92

[Close]

BLAST of ClCG11G007090 vs. TAIR10
Match: AT1G80745.1 (AT1G80745.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-19
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAE 72
           E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K++GEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 73  EEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKL 119
           +         G ++T +            +K ++PVA +HKILKF+L
Sbjct: 62  K---------GDNQTPQ------------KKTVEPVAKLHKILKFRL 87

[Close]

BLAST of ClCG11G007090 vs. NCBI nr
Match: gi|778673260|ref|XP_004138617.2| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 7.3e-54
Identity = 113/128 (88.28%), Postives = 116/128 (90.62%), Query Frame = 1


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS SD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSET R SRE VEP+QA +KELK VA VHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           S  P+SIS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of ClCG11G007090 vs. NCBI nr
Match: gi|659081450|ref|XP_008441338.1| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 111/128 (86.72%), Postives = 114/128 (89.06%), Query Frame = 1


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDS S+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETSRRSREAVEPKQAPRKELKPVASVHKILKFKLLD 120
           ETIGTCLTFAEEEVPVVEEEA PSET+  SREA EPKQA RKELK  A VHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120

Query: 121 SAAPNSIS 129
           S  P+ IS
Sbjct: 121 SDVPSPIS 128

[Close]

BLAST of ClCG11G007090 vs. NCBI nr
Match: gi|590608770|ref|XP_007021355.1| (Transcription factor TFIIIC, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 142.9 bits (359), Expect = 3.9e-31
Identity = 74/111 (66.67%), Postives = 88/111 (79.28%), Query Frame = 1


Query: 12  GEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFA 71
           GE EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K+K+IGEYEETIGTCL F+
Sbjct: 15  GESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFS 74

Query: 72  EEEV-PVVEEEAGPSETSRRS-REAVEPKQAPRKELKPVASVHKILKFKLL 120
           E+E  PVV EE GPSE +  S +  ++P QAPRK++KPVA +HKILKF+LL
Sbjct: 75  EDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFRLL 125

[Close]

BLAST of ClCG11G007090 vs. NCBI nr
Match: gi|1009161770|ref|XP_015899074.1| (PREDICTED: uncharacterized protein LOC107432442 [Ziziphus jujuba])

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-30
Identity = 73/125 (58.40%), Postives = 93/125 (74.40%), Query Frame = 1


Query: 1   MEKATIDSTSDGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEY 60
           ME  T+ +  + +EEYVLLDL  VS  LDIPPNAPYVL+GLDT+NP+L I  K+K+IG Y
Sbjct: 1   MEANTVQNNHEDDEEYVLLDLDGVSGQLDIPPNAPYVLTGLDTLNPILIIDGKLKLIGNY 60

Query: 61  EETIGTCLTFAEEEV-PVVEEEAGPSETSRRSREA-VEPKQAPRKELKPVASVHKILKFK 120
           EETIGTCL F EE+  PVV EE GPSE +  S +  ++P QAP+K++KPV  ++KIL+FK
Sbjct: 61  EETIGTCLVFTEEDTGPVVHEETGPSEANLFSGKCIIDPNQAPKKQVKPVTRLNKILRFK 120

Query: 121 LLDSA 123
           L   A
Sbjct: 121 LAPDA 125

[Close]

BLAST of ClCG11G007090 vs. NCBI nr
Match: gi|747100477|ref|XP_011098327.1| (PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum indicum])

HSP 1 Score: 139.4 bits (350), Expect = 4.3e-30
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1


Query: 10  SDGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLT 69
           ++ EEEYVLLDL  VS  + IPPNAPYVLSGLDT+NP+LTI DKIK+IGEYEETIGTCL 
Sbjct: 16  AEEEEEYVLLDLDGVSDHVQIPPNAPYVLSGLDTLNPILTIDDKIKLIGEYEETIGTCLV 75

Query: 70  FAE-EEVPVVEEEAGPSETSRRS-REAVEPKQAPRKELKPVASVHKILKFKL 119
           F E +E P+V EEAGPSET+  S R  V+PKQ P K++  VA+++K+LKF+L
Sbjct: 76  FNESDEAPIVHEEAGPSETNLFSGRCIVDPKQTPAKQVNAVATLNKVLKFRL 127

The following BLAST results are available for this feature:

BLAST of ClCG11G007090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LML8_CUCSA	5.1e-54	88.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1	[more]
A0A061F685_THECC	2.7e-31	66.67	Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384...	[more]
A0A067G3D4_CITSI	1.1e-29	63.96	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032469mg PE=4 SV=1	[more]
W9R8U5_9ROSA	1.5e-29	59.17	Uncharacterized protein OS=Morus notabilis GN=L484_025663 PE=4 SV=1	[more]
A0A072VBF0_MEDTR	1.5e-29	57.14	Transcription factor tfiiic, tau55-like protein, putative OS=Medicago truncatula...	[more]

BLAST of ClCG11G007090 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15420.1	1.3e-21	52.78	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	1.2e-19	47.66	Transcription factor TFIIIC, tau55-related protein	[more]

BLAST of ClCG11G007090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673260\|ref\|XP_004138617.2\|	7.3e-54	88.28	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus]	[more]
gi\|659081450\|ref\|XP_008441338.1\|	2.8e-53	86.72	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]	[more]
gi\|590608770\|ref\|XP_007021355.1\|	3.9e-31	66.67	Transcription factor TFIIIC, putative isoform 1 [Theobroma cacao]	[more]
gi\|1009161770\|ref\|XP_015899074.1\|	1.9e-30	58.40	PREDICTED: uncharacterized protein LOC107432442 [Ziziphus jujuba]	[more]
gi\|747100477\|ref\|XP_011098327.1\|	4.3e-30	66.07	PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum ind...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019481	TFIIIC_tau55-rel

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G007090.1	ClCG11G007090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019481	Transcription factor TFIIIC, tau55-related	PFAM	PF10419	TFIIIC_sub6	coord: 35..69 score: 6.2
None	No IPR available	PANTHER	PTHR21860	UNCHARACTERIZED	coord: 13..118 score: 7.4
None	No IPR available	PANTHER	PTHR21860:SF2	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 6	coord: 13..118 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G007090	Csa2G406680	Cucumber (Chinese Long) v2	cuwcgB106
ClCG11G007090	MELO3C008192	Melon (DHL92) v3.5.1	mewcgB272
ClCG11G007090	Cla006507	Watermelon (97103) v1	wcgwmB108
ClCG11G007090	Cla97C11G214030	Watermelon (97103) v2	wcgwmbB065
ClCG11G007090	Bhi04G001985	Wax gourd	wcgwgoB158
ClCG11G007090	CSPI02G25630	Wild cucumber (PI 183967)	cpiwcgB113
ClCG11G007090	Cucsa.087730	Cucumber (Gy14) v1	cgywcgB098
ClCG11G007090	CmaCh15G000780	Cucurbita maxima (Rimu)	cmawcgB252
ClCG11G007090	CmoCh15G000790	Cucurbita moschata (Rifu)	cmowcgB240
ClCG11G007090	Lsi03G003960	Bottle gourd (USVL1VR-Ls)	lsiwcgB226
ClCG11G007090	CsGy2G025260	Cucumber (Gy14) v2	cgybwcgB105
ClCG11G007090	MELO3C008192.2	Melon (DHL92) v3.6.1	medwcgB263

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G007090	Cucumber (Chinese Long) v3	cucwcgB122
ClCG11G007090	Cucurbita maxima (Rimu)	cmawcgB619
ClCG11G007090	Cucurbita moschata (Rifu)	cmowcgB621
ClCG11G007090	Cucurbita pepo (Zucchini)	cpewcgB159
ClCG11G007090	Cucurbita pepo (Zucchini)	cpewcgB355
ClCG11G007090	Silver-seed gourd	carwcgB0019
ClCG11G007090	Silver-seed gourd	carwcgB0985