Lsi03G003960 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G003960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor tfiiic, tau55-like protein, putative
Location	chr03 : 4555945 .. 4559696 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGAGCAGTGAGTGAGTGAGTAAGGCCTCCTCCAAACCCCTTTCAACCTTTCTCTCTCTACCCATACTAAACCGTACGAGCAAAATAGACGCCCCCCCGCCTTCCTCCGTCCGACCGATCATCCGTCGCAGTCGCCACCGGTAAGGCCCTCCATTCCGCAATCTCTCTCTCTCTCTCTCTCTCCCATTCTGTTTGCAGCACCGCTTAGCAACCCTCCGCCTCCGATCGTCCATTGTCGCCACGCTACCGCCGGAGCTTCGACTATTTCAAATTTTTATTTGATATTGCATAGGTATTTTTTTCGCCTTTGCATTCAAACACACTGATCTGGAATCCTACCAAAATCAGGGGTTATAAACTGGGGTTAGCCAAAAGCTTTATTTGATATTGCTGAGCCGCTGACGAATTCATATTATTTTTTCAGAGGTATCTCTAAGGAACATGGAGAAAGCTACAATTGATTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCACTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGTATGTGACCTTCTCTAATTATCAAGTAATGAAAATTTTTCTGCGAGCTAATTCTTGATATTTAATAACCTGCTTTCAAGTTACCGTTGTTAAATTAAAACTGAGATGTTCATTAATTTCCCCTTTAAGCAGTTAAGAATTCGATATTTGAATATTTAAGAATTAGACTTAACAGGTAGAAGAATAATCTCCATAACTACCAATACACGTATTATACAGAAATTTGATTGTACAATAGTCCATATATGATATATTTAATGGCATATTTAGGGATACTTATTGATATTCTTTGGAACAAATTGAATGCCATATGTTATGAGAATTAGTGGGGAGCTAAGCCAAGAAAGCGGTTGCCTTATTGATTTTCTTAAAAATGAATGCAAATGGGGAAGCTCCACCTTCGTAACTAGGTTAGGTTTCAGGGGAGTGAGAGTGAATAGCATTAGGTTCCATGAAGTTAATATGAAATAACCTTAGGTAAAAGCTAATCCTAACAACTCATCAACATAAGATTACAATTTTGCCGTTATCCCTACACCATTAACGTCCTCCTAAGAAAAATAACTCGAAATTTTGCAAGGAAAGTTAGAAATGTTGAGATCAGATGGTAGGTCATGGTCAACAACTAATTATTTTTCTCGCACACTTCAAAATTTTGCAAGGGCCAATCTACCTTTTCTTACGCTTACCATATATTTCTACGTACCCTCAGGAGGAGGCCCACTGTTCCTTAAGTGCACCATGGTTAGTTCTCTAACTTCAGAATCCTTGTTACATTGCTTCCTGTTTGCTAATGCATATTGTACATTAGCCTTACCAAACTTGGTGGAGAGCTAAGTCAAAGGAAGGGGCATCTACATTTTAGAACTCAAGGACACAGTTGTACAACCTATAGAACAGATCTTGTTCAAAGGCATCTAATTGGTTTAAAAAACAATGAATGCAAGTTACAATACATAAGGGCAAGCCCCACCATCATGAATTGGTTTGATTTGAGAAAGAGAGAGCAAATTACATTAGTTTTCATGACAACTACTCAAAACAAGGTTATACTTTAACCCCGTATGCCTATTTAAACAGAAGTAGTTAACTAGTAAGGTTATAACTTTATCACAAATTTTTTCCAACCATGAGTACTCCCCTCTACTAGGTTCCAGTGCTACACCGATACACAACTTGTATTTTCTTGGAGTATCGTGTGAGGGTTTGATTGGTTTTTGATTATTACGTGCAGTGAGCTTTAAGAAGAAAAAAAATATGTATGTTGTTGGGCAAGCATTCTGTTAATTTGTACGGTTTACGTGAATTTTGATTAATTTGTTTTGCAGGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGGTAAGTTGTTAATAAGAGAGAAGCTCTACACCTAAGTGTACTGCAGTAGAACCATAATGTGTAATCTCTTGCCATTATTGAGTTCACACATTAGCTCATTTGTGCCCCTTCCCCCCTTTACAGTTGATTTGTTTAGTATTGTTAGAGTACCTAAATGTTTACCATTTAAGGATAAGCTTCAGATGTATAGTAATTTATGCTATGCTCACAATTTAAATGACATTGATCTTACTTTCTTTTCTTTTGGTTTGGGGCAACTTACAAGGCTGTTGTAGTCTATTTTCTGTGATTAACAGGCAATTCTATAACTTTCATATTAAAATATTTGTTTTATATCTCTTCTGTAGATTGGAGAATATGAAGAAACCATAGGTACATGTCTTACCTTTGCGGAAGGTGAGCAAATTTAAATGAAACGGAGTCATTTGATTCCTAAACTTTAAGCAAGTTTTCAATATGATCTTTGAGACTTTGCATATAGCATTTGAACATTTCAATTGGAAAACCATTGTCTTACATTGAAGTCATGTTCCCTAATGTAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAATCGTCGCTCGGGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAGTTACTTGATTCTGCTGTTCCAAACTCAATATCTTAGTACTAAAGAGACTAATGTTATCTGTATATATTACTTTAAAATGCTTCTAAATAAACCTTTCGACAAAAAGTAAATTGATAGAACTTGTGGATCGAGTTATAAGTTTTGTCTATAGTTAGCTGCAATGGGAAAACAGATGAACAATTTGGATGAGCTCTGAGTACTTGTAATTGTACTTGAAATCTGGATTTAGGTTAAAAGAGAGTATTTTCCTACTGAATATTTAAGCCTTTGCTATCGACACTCTAATTCATTATTTATATTTCCTTGCCCTCGCCGCGTTAGGGGAATGATATGGGGAGCAGGAATGAGGAAGTCATCTCCGCTCTCGTCCTGCCTGTAAACATCTCTAATACCAAAGCTATCAAAACTCATATAACACAAGGATTTTAAAACATATCAAAATAATATTTTTATCAAAGAGTTGTTTTGTAATATTAGTTAAAAACAAGGTTTAAAATATCAAAGTCGATGAAAATACTAAATAAAATAATAAAATAATTTAAATTAATAAATAAACATTTTGATGGTATTTAAACCAGTTAACATATCATTTATTTATATTATATTTACTTGTTATTTTTTATGTTGGATGAATATAAACATGGATGGAAATTTATGAAACAATGGGCTTTGGCATCGTAAACATCCCCCCAAAACCACAGATTTGGCAAAGCAACAAATCAGAACAAGCAGCCACGTCAGTTTCCACGTAGGCCTTCCCATTGTCAGCTCACTTGCCTGTGACGATTTTAACAATCACAGACAGCCTCTGCCTCAGCTCATCAAGCATCAGTTCACTCGCCTCGGCTGTGACAATGCCTGGATTAACAGCACCCTCAGATTACTCTCAAGAGCCACTTCGTCACCCATGTCTCCGAATCAACGCCAAGGCAACCCTTTCTTATTCAAAATTTGCCTTCTACTTGTTGAAGAAGCAGTGGTTTCAGCTTTGTTTGTTATGAATATTTTTGTGCTGATTTTCTCTTCCTCAGGAGCCCTTCAATGCAGAGCCACCCCGCTCAGCCCTGATTTCATCTTATATCACTCCTGTACAATTCTTTTACAAGAGAAATCACGGCCCTATTCCATTAGTGGATGA

mRNA sequence

CGGGAGCAGTGAGTGAGTGAGTAAGGCCTCCTCCAAACCCCTTTCAACCTTTCTCTCTCTACCCATACTAAACCGTACGAGCAAAATAGACGCCCCCCCGCCTTCCTCCGTCCGACCGATCATCCGTCGCAGTCGCCACCGGTAAGGCCCTCCATTCCGCAATCTCTCTCTCTCTCTCTCTCTCCCATTCTGTTTGCAGCACCGCTTAGCAACCCTCCGCCTCCGATCGTCCATTGTCGCCACGCTACCGCCGGAGCTTCGACTATTTCAAATTTTTATTTGATATTGCATAGAGGTATCTCTAAGGAACATGGAGAAAGCTACAATTGATTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCACTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACCATAGGTACATGTCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAATCGTCGCTCGGGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAACAGCCTCTGCCTCAGCTCATCAAGCATCAGTTCACTCGCCTCGGCTGTGACAATGCCTGGATTAACAGCACCCTCAGATTACTCTCAAGAGCCACTTCGTCACCCATGTCTCCGAATCAACGCCAAGGCAACCCTTTCTTATTCAAAATTTGCCTTCTACTTGTTGAAGAAGCAGTGGTTTCAGCTTTGTTTGTTATGAATATTTTTGTGCTGATTTTCTCTTCCTCAGGAGCCCTTCAATGCAGAGCCACCCCGCTCAGCCCTGATTTCATCTTATATCACTCCTGTACAATTCTTTTACAAGAGAAATCACGGCCCTATTCCATTAGTGGATGA

Coding sequence (CDS)

ATGGAGAAAGCTACAATTGATTCTGCCTCTGATGGCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCACTGCTTGACATTCCACCCAATGCTCCATATGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGCGACAAAATTAAGATGATTGGAGAATATGAAGAAACCATAGGTACATGTCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTGGGCCATCTGAAACAAATCGTCGCTCGGGAGAAGCAGTTGAACCAAAACAAGCTCCTAGAAAGGAGTTGAAGCCCGTTGCTTCTGTACATAAGATCCTTAAATTTAAACAGCCTCTGCCTCAGCTCATCAAGCATCAGTTCACTCGCCTCGGCTGTGACAATGCCTGGATTAACAGCACCCTCAGATTACTCTCAAGAGCCACTTCGTCACCCATGTCTCCGAATCAACGCCAAGGCAACCCTTTCTTATTCAAAATTTGCCTTCTACTTGTTGAAGAAGCAGTGGTTTCAGCTTTGTTTGTTATGAATATTTTTGTGCTGATTTTCTCTTCCTCAGGAGCCCTTCAATGCAGAGCCACCCCGCTCAGCCCTGATTTCATCTTATATCACTCCTGTACAATTCTTTTACAAGAGAAATCACGGCCCTATTCCATTAGTGGATGA

Protein sequence

MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVHKILKFKQPLPQLIKHQFTRLGCDNAWINSTLRLLSRATSSPMSPNQRQGNPFLFKICLLLVEEAVVSALFVMNIFVLIFSSSGALQCRATPLSPDFILYHSCTILLQEKSRPYSISG

Homology

[Close]

BLAST of Lsi03G003960 vs. TrEMBL
Match: A0A0A0LML8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.2e-47
Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDSASD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVHKILKFK 118
           ETIGTCLTFAEEEVPVVEEEA PSET R S E VEP+QA +KELK VA VHKILKFK
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFK 117

[Close]

BLAST of Lsi03G003960 vs. TrEMBL
Match: A0A061F685_THECC (Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-30
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 12  GEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFA 71
           GE EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K+K+IGEYEETIGTCL F+
Sbjct: 15  GESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFS 74

Query: 72  EEEV-PVVEEEAGPSETNRRSGE-AVEPKQAPRKELKPVASVHKILKFK 118
           E+E  PVV EE GPSE N  SG+  ++P QAPRK++KPVA +HKILKF+
Sbjct: 75  EDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFR 123

[Close]

BLAST of Lsi03G003960 vs. TrEMBL
Match: A0A067G3D4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032469mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 1


Query: 11  DGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTF 70
           D EEE+ LLDL  +S   DIPPNAPYVLSGLDT+NPVL I +KIK+IGEYEETIGTC  F
Sbjct: 14  DDEEEFALLDLDVLSGNFDIPPNAPYVLSGLDTLNPVLVIDNKIKLIGEYEETIGTCFAF 73

Query: 71  AEEEVPVVEEEAGPSETNRRSGEA-VEPKQAPRKELKPVASVHKILKFKQPLPQLIKHQF 130
           AE+  P+V EEAG SE N  SG+  ++  QAPRK++KPVA +HKILKF+  L   ++++ 
Sbjct: 74  AEDAAPMVHEEAGSSELNLFSGKCIIDSNQAPRKQVKPVARLHKILKFRILLDDDVQNRT 133

[Close]

BLAST of Lsi03G003960 vs. TrEMBL
Match: A0A067G397_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032469mg PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 75/122 (61.48%), Postives = 93/122 (76.23%), Query Frame = 1


Query: 11  DGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTF 70
           D EEE+ LLDL  +S   DIPPNAPYVLSGLDT+NPVL I +KIK+IGEYEETIGTC  F
Sbjct: 14  DDEEEFALLDLDVLSGNFDIPPNAPYVLSGLDTLNPVLVIDNKIKLIGEYEETIGTCFAF 73

Query: 71  AEEE-VPVVEEEAGPSETNRRSGEA-VEPKQAPRKELKPVASVHKILKFKQPLPQLIKHQ 130
           AE+E  P+V EEAG SE N  SG+  ++  QAPRK++KPVA +HKILKF+  L   ++++
Sbjct: 74  AEDEAAPMVHEEAGSSELNLFSGKCIIDSNQAPRKQVKPVARLHKILKFRILLDDDVQNR 133

[Close]

BLAST of Lsi03G003960 vs. TrEMBL
Match: A0A0D2TQB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319700 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.5e-28
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 1


Query: 1   MEKATIDSASDGEE-EYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGE 60
           MEK   D   + E+ EYVLLDL  V   +DIPPNAPY LSGLDTMNP+L I  K+K+IGE
Sbjct: 1   MEKNKDDDYGEEEDSEYVLLDLEAVRGQIDIPPNAPYTLSGLDTMNPILIIDKKVKLIGE 60

Query: 61  YEETIGTCLTFAEEEV-PVVEEEAGPSETNRRSGE-AVEPKQAPRKELKPVASVHKILKF 118
           YEETIGTC  F+E+E  PVV EE GPSE N  SG+  ++P QAPRK++KPVA + KILKF
Sbjct: 61  YEETIGTCFVFSEDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVARLQKILKF 120

[Close]

BLAST of Lsi03G003960 vs. TAIR10
Match: AT3G15420.1 (AT3G15420.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 1


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAE 72
           EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  KIK++GEY ETIGTCL F+E
Sbjct: 2   EEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFSE 61

Query: 73  EEVPVVEEEAGPSETNRRSGEAVEPKQAPRKE-LKPVASVHKILKFK 118
                 +EE   SE            Q P K+ ++PVA +HKILKF+
Sbjct: 62  ------KEEVSASE-----------NQMPHKKIIEPVAKLHKILKFR 91

[Close]

BLAST of Lsi03G003960 vs. TAIR10
Match: AT1G80745.1 (AT1G80745.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-18
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 1


Query: 13  EEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFAE 72
           E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K+K++GEY  TIGTCL F++
Sbjct: 2   EDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFSD 61

Query: 73  EEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVHKILKFK 118
           +         G ++T +            +K ++PVA +HKILKF+
Sbjct: 62  K---------GDNQTPQ------------KKTVEPVAKLHKILKFR 86

[Close]

BLAST of Lsi03G003960 vs. NCBI nr
Match: gi|659081450|ref|XP_008441338.1| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 6.2e-48
Identity = 105/117 (89.74%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 1   MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVHKILKFK 118
           ETIGTCLTFAEEEVPVVEEEA PSETN  S EA EPKQA RKELK  A VHKILKFK
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFK 117

[Close]

BLAST of Lsi03G003960 vs. NCBI nr
Match: gi|778673260|ref|XP_004138617.2| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 3.1e-47
Identity = 105/117 (89.74%), Postives = 107/117 (91.45%), Query Frame = 1


Query: 1   MEKATIDSASDGEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYE 60
           MEKATIDSASD EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDK KMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 61  ETIGTCLTFAEEEVPVVEEEAGPSETNRRSGEAVEPKQAPRKELKPVASVHKILKFK 118
           ETIGTCLTFAEEEVPVVEEEA PSET R S E VEP+QA +KELK VA VHKILKFK
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFK 117

[Close]

BLAST of Lsi03G003960 vs. NCBI nr
Match: gi|590608770|ref|XP_007021355.1| (Transcription factor TFIIIC, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 74/109 (67.89%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 12  GEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLTFA 71
           GE EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K+K+IGEYEETIGTCL F+
Sbjct: 15  GESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFS 74

Query: 72  EEEV-PVVEEEAGPSETNRRSGE-AVEPKQAPRKELKPVASVHKILKFK 118
           E+E  PVV EE GPSE N  SG+  ++P QAPRK++KPVA +HKILKF+
Sbjct: 75  EDEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFR 123

[Close]

BLAST of Lsi03G003960 vs. NCBI nr
Match: gi|1009161770|ref|XP_015899074.1| (PREDICTED: uncharacterized protein LOC107432442 [Ziziphus jujuba])

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-29
Identity = 73/120 (60.83%), Postives = 92/120 (76.67%), Query Frame = 1


Query: 1   MEKATIDSASDGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEY 60
           ME  T+ +  + +EEYVLLDL  VS  LDIPPNAPYVL+GLDT+NP+L I  K+K+IG Y
Sbjct: 1   MEANTVQNNHEDDEEYVLLDLDGVSGQLDIPPNAPYVLTGLDTLNPILIIDGKLKLIGNY 60

Query: 61  EETIGTCLTFAEEEV-PVVEEEAGPSETNRRSGEA-VEPKQAPRKELKPVASVHKILKFK 118
           EETIGTCL F EE+  PVV EE GPSE N  SG+  ++P QAP+K++KPV  ++KIL+FK
Sbjct: 61  EETIGTCLVFTEEDTGPVVHEETGPSEANLFSGKCIIDPNQAPKKQVKPVTRLNKILRFK 120

[Close]

BLAST of Lsi03G003960 vs. NCBI nr
Match: gi|747100477|ref|XP_011098327.1| (PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum indicum])

HSP 1 Score: 136.3 bits (342), Expect = 6.5e-29
Identity = 74/111 (66.67%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 10  SDGEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKIKMIGEYEETIGTCLT 69
           ++ EEEYVLLDL  VS  + IPPNAPYVLSGLDT+NP+LTI DKIK+IGEYEETIGTCL 
Sbjct: 16  AEEEEEYVLLDLDGVSDHVQIPPNAPYVLSGLDTLNPILTIDDKIKLIGEYEETIGTCLV 75

Query: 70  FAE-EEVPVVEEEAGPSETNRRSGEA-VEPKQAPRKELKPVASVHKILKFK 118
           F E +E P+V EEAGPSETN  SG   V+PKQ P K++  VA+++K+LKF+
Sbjct: 76  FNESDEAPIVHEEAGPSETNLFSGRCIVDPKQTPAKQVNAVATLNKVLKFR 126

The following BLAST results are available for this feature:

BLAST of Lsi03G003960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G003960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LML8_CUCSA	2.2e-47	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1	[more]
A0A061F685_THECC	9.1e-30	67.89	Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384...	[more]
A0A067G3D4_CITSI	1.0e-28	61.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032469mg PE=4 SV=1	[more]
A0A067G397_CITSI	5.0e-28	61.48	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032469mg PE=4 SV=1	[more]
A0A0D2TQB4_GOSRA	6.5e-28	61.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319700 PE=4 SV=1	[more]

BLAST of Lsi03G003960 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15420.1	1.3e-19	52.34	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	4.2e-18	47.17	Transcription factor TFIIIC, tau55-related protein	[more]

BLAST of Lsi03G003960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081450\|ref\|XP_008441338.1\|	6.2e-48	89.74	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]	[more]
gi\|778673260\|ref\|XP_004138617.2\|	3.1e-47	89.74	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus]	[more]
gi\|590608770\|ref\|XP_007021355.1\|	1.3e-29	67.89	Transcription factor TFIIIC, putative isoform 1 [Theobroma cacao]	[more]
gi\|1009161770\|ref\|XP_015899074.1\|	5.0e-29	60.83	PREDICTED: uncharacterized protein LOC107432442 [Ziziphus jujuba]	[more]
gi\|747100477\|ref\|XP_011098327.1\|	6.5e-29	66.67	PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum ind...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019481	TFIIIC_tau55-rel

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G003960.1	Lsi03G003960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019481	Transcription factor TFIIIC, tau55-related	PFAM	PF10419	TFIIIC_sub6	coord: 35..69 score: 1.6
None	No IPR available	PANTHER	PTHR21860	UNCHARACTERIZED	coord: 13..118 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G003960	Csa2G406680	Cucumber (Chinese Long) v2	culsiB115
Lsi03G003960	CSPI02G25630	Wild cucumber (PI 183967)	cpilsiB113
Lsi03G003960	Cucsa.087730	Cucumber (Gy14) v1	cgylsiB098
Lsi03G003960	CmaCh15G000780	Cucurbita maxima (Rimu)	cmalsiB276
Lsi03G003960	CmoCh15G000790	Cucurbita moschata (Rifu)	cmolsiB265
Lsi03G003960	Cla006507	Watermelon (97103) v1	lsiwmB277
Lsi03G003960	MELO3C008192	Melon (DHL92) v3.5.1	lsimeB259
Lsi03G003960	ClCG11G007090	Watermelon (Charleston Gray)	lsiwcgB226
Lsi03G003960	MELO3C008192.2	Melon (DHL92) v3.6.1	lsimedB272
Lsi03G003960	Cla97C11G214020	Watermelon (97103) v2	lsiwmbB222
Lsi03G003960	Bhi04G001985	Wax gourd	lsiwgoB322
Lsi03G003960	CsGy2G025260	Cucumber (Gy14) v2	cgyblsiB102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G003960	Cucurbita maxima (Rimu)	cmalsiB656
Lsi03G003960	Cucurbita moschata (Rifu)	cmolsiB645
Lsi03G003960	Cucurbita pepo (Zucchini)	cpelsiB143
Lsi03G003960	Cucurbita pepo (Zucchini)	cpelsiB339
Lsi03G003960	Silver-seed gourd	carlsiB017
Lsi03G003960	Silver-seed gourd	carlsiB924
Lsi03G003960	Cucumber (Chinese Long) v3	cuclsiB127