Cucsa.087730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.087730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription factor tfiiic, tau55-like protein, putative
Location	scaffold00888 : 299337 .. 301590 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTAAGGAACATGGAAAAAGCTACAATTGATTCCGCCTCTGATGTCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCTATCTGTATGTTTCTGACCTACTCTAATTATCAAGTAATTAAATTTTATCTTCCAGCTAATTCTTGATCTTTAATTACTTGCTTTCAAGTTACCGTTGTTAAATTAAAATGAGTTGTTTATTAATTTCCCCTTTAAGCAGTTAAGAATAACATATTTGAGTATTTAAGAATCAGACTTTAACAAGCATCAGGGGTTGTTTAAATTTTATTAATTGAAGTGACAAATGCATCTACTATAACTTTGAAAATAAACTTTGCACTATTACGTGCTTATATGTAATCTTTGGATCAAACTTACCTATTATATAAATGATGTCAAATATATGTTGAGTGTAAATTTTGACGTAACACTTATGATTGTAAACCATCACGTACTCCTTATGATCTTAGTGTAAAGTTGATCCACACTGGTGATACTGTTAACCAATCTCCGTATGCAAGCATTATTGGCAGTCTCAGACATGCTCCTAACTGCATAGTGTGGGATTACTATGTAGGTTTACAAGCAGACCTAGTGTAGAGCATTGGAATGTCATAGAAAGTATCATGAGATACTTGAAGAAAACCTAGGACATAGGATTGTATTAGCATGACATTCTGAACTGTATGGAAAAGATTGATGTCAGTTCTTAATGAGGTGTTTAACTTGTTATTTTGATGCCCAAACGTTCACACATAAATTCATGAATTCTATGGTGTTTAACTTGTTGTTTCGATGTTTTTAAATGGAGCATTTCACAATATGTTCACATACACGATATAGATTTAATTTTTTAATAAAAAAATAATGTCTCCCCAATATGTCAGTGTGTCGTGCCCTACTTTTTCGATAATTGGCGTGTTTGCCGTGTCGGTGTCCATGCTTCCTAGCATATGGGCATTCATAACTTGGTTTGATTTGAGAGAAGAGCAAATTACATTACTCGTGATGACATCTATTCAAAATAAGGTTATACTTTTAACCCCATATGCCTATATAAAGAGAAGTAGTTAACTAGTAAGTTACCTTGGTGCAAACTTTTTCCAACCAGGAGTACCCCCTCTACCAGGTTTTCGCGCTAGACCGATACACAACTTGCGTATTCCTAGAGTATCGTGTGAGAGTTTGGTTGGTTTGTGACTATTACGTGCAATAAGCTTTAAGGAAAATGAATATATTGTGTAATTTGGCAAGCATTCTGTTAATTTGTACGCTTTATGTGAATTTTGATTCATTTGTTTTCCAGGGTTTGGACACCATGAATCCAGTGTTGACTATCTGTGATAAATTTAAGATGGTAAGTTGTTAATGAGATACAAGCTTTCACCTAGTGTACTACTGCAGAACCATAAAGTGTAGTCTCTTGGCATTATTGTGTTTGCTATTGCTGTTAAGAGTACCTAATTTTTTTACCATTTAAGGATAAGCTTCAGATGTATAGAAATTTATGCTAACACACAATTTAAATGATATTGATCGTATTCTCTTATCTTTTGGTTTGATTCAAGGTTGTTGTAGTCTATATTTTGTGATTAACGGGCATTTCTATCAAACTTTCGTATAAAAATACTTGTTTTAAATCTCTTTTGTAGATTGGAGAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGGTGAGCAAATTTAAAGAAAACGTAGCCATTTGATTTTAAAGCAAGTTTTCAAATTGTTCTTTAATATTTTGCATAGATATATATAGGAAAACCAATGTCTTACTCTGTTGTCTAATGTAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTACATAAGATCCTTAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAGTGCACTAAAGAGACAGATTAATGTTAGTTCATATTTGTATATATTGAGGTGTCAGTTTTATGTATAGTTAGATGCAATGTGACAGATAACCTAAGTAAAGAACAAGTAGAGGGAAAGGTGTATCCTCGTTGGTCAACTCATCACTATCCTCTATAGAATAGAACGGAGTGTTATCGTGGAAGCTAAGAGTATTTTCTTACCAAATATTTAAAATATTCTC

mRNA sequence

CTCTAAGGAACATGGAAAAAGCTACAATTGATTCCGCCTCTGATGTCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGTGATAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTACATAAGATCCTTAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAGTGCACTAAAGAGACAGATTAATGTTAGTTCATATTTGTATATATTGAGGTGTCAGTTTTATGTATAGTTAGATGCAATGTGACAGATAACCTAAGTAAAGAACAAGTAGAGGGAAAGGTGTATCCTCGTTGGTCAACTCATCACTATCCTCTATAGAATAGAACGGAGTGTTATCGTGGAAGCTAAGAGTATTTTCTTACCAAATATTTAAAATATTCTC

Coding sequence (CDS)

CTAAGGAACATGGAAAAAGCTACAATTGATTCCGCCTCTGATGTCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGTGATAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAGAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTACATAAGATCCTTAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAG

Protein sequence

LRNMEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS*

Homology

[Close]

BLAST of Cucsa.087730 vs. TrEMBL
Match: A0A0A0LML8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-64
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 4   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 63
           MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 64  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLD 123
           ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEP+QATKKELKLVACVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 124 SDVPSSIS 132
           SDVPSSIS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of Cucsa.087730 vs. TrEMBL
Match: A0A059AM91_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00444 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-26
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 7   ATIDSASDVEEEYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEET 66
           A  D   ++EEEYVLLDL  V    DI PNAPYVLSGLDT+NP+L I +K K+IG YEET
Sbjct: 5   AAHDDDVEIEEEYVLLDLDSVPEQFDITPNAPYVLSGLDTLNPILVIDNKLKLIGHYEET 64

Query: 67  IGTCLTFAEEEV-PVVEEEAQPSETLRCS-REEVEPKQATKKELKLVACVHKILKFKL-L 126
           IGTC+   EE    +V EE  PSE  + S +  ++P Q   K++K VAC+HKILKFKL +
Sbjct: 65  IGTCIALTEEGTSSIVPEETGPSEANKSSGKSNMDPNQCPSKQVKPVACIHKILKFKLFV 124

Query: 127 DSDVPSS 130
           D++VP +
Sbjct: 125 DTNVPDA 131

[Close]

BLAST of Cucsa.087730 vs. TrEMBL
Match: A0A061F685_THECC (Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-26
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 1


Query: 16  EEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE 75
           E EYVLLDL  VS  +DIPPNAPY LSGLDT NP+L I  K K+IGEYEETIGTCL F+E
Sbjct: 16  ESEYVLLDLDAVSGQIDIPPNAPYTLSGLDTTNPILLIDQKVKLIGEYEETIGTCLVFSE 75

Query: 76  EEV-PVVEEEAQPSE-TLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSD 126
           +E  PVV EE  PSE  L   +  ++P QA +K++K VA +HKILKF+LL  D
Sbjct: 76  DEASPVVHEETGPSEANLFSGKYIIDPNQAPRKQVKPVAQLHKILKFRLLLDD 128

[Close]

BLAST of Cucsa.087730 vs. TrEMBL
Match: W9R8U5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025663 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-26
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1


Query: 4   MEKATIDSASDVEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEY 63
           ME  + +   + E+EYVLLDL  VS  LDIPPNAPYVLSGLDT NPVL I DK K+IG+Y
Sbjct: 1   MEANSANQVKEDEDEYVLLDLDSVSGQLDIPPNAPYVLSGLDTPNPVLIIGDKLKLIGDY 60

Query: 64  EETIGTCLTFAEEE-VPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKL 123
           EETIGTCL F E++  PVV EE  P   L   +  ++PKQ+ +K++K +  + KILKF+L
Sbjct: 61  EETIGTCLFFTEKDNGPVVHEETGPEANLFSGKCIIDPKQSPRKQVKPMTSLKKILKFRL 120

Query: 124 -LDSDVPSS 130
             D D+  S
Sbjct: 121 ATDDDIQDS 129

[Close]

BLAST of Cucsa.087730 vs. TrEMBL
Match: A0A0B2RX88_GLYSO (Leucine-rich repeat-containing protein 40 OS=Glycine soja GN=glysoja_001535 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-26
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 1


Query: 2   RNMEKATIDSASDVEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIG 61
           RNME        + ++EYVLL+L  VS L+DIPPNA YVL+GLDT+NPVL I DKFK+IG
Sbjct: 673 RNMEANAASHDHEDQDEYVLLNLDGVSDLIDIPPNAKYVLTGLDTLNPVLIIDDKFKLIG 732

Query: 62  EYEETIGTCLTFAEEEVPVVEEEAQPSE-TLRCSREEVEPKQATKKELKLVACVHKILKF 121
           EYEETIGTC+ F E+E  VV EE  PSE  +      ++  QA   ++K V  +HK+LKF
Sbjct: 733 EYEETIGTCIAFTEQEAAVVHEETGPSEVNIFSGTRLIDSSQAPTTQVKPVCQLHKVLKF 792

Query: 122 KLL-DSDV 127
           KL  DS++
Sbjct: 793 KLSPDSEI 800

[Close]

BLAST of Cucsa.087730 vs. TAIR10
Match: AT3G15420.1 (AT3G15420.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 97.1 bits (240), Expect = 8.9e-21
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1


Query: 15  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFA 74
           +EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  K K++GEY ETIGTCL F+
Sbjct: 1   MEEEFVMIDLDEVSRHIEIPSDAPYTLSGLDTLNPVLTIDGKIKLVGEYIETIGTCLAFS 60

Query: 75  EEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKL--LDSD 126
           E+E     E   P                 KK ++ VA +HKILKF+L  LD+D
Sbjct: 61  EKEEVSASENQMPH----------------KKIIEPVAKLHKILKFRLAALDND 98

[Close]

BLAST of Cucsa.087730 vs. TAIR10
Match: AT1G80745.1 (AT1G80745.1 Transcription factor TFIIIC, tau55-related protein)

HSP 1 Score: 87.8 bits (216), Expect = 5.4e-18
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 1


Query: 15  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFA 74
           +E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K K++GEY  TIGTCL F+
Sbjct: 1   MEDEHVMIDLDDVSRHIDIPADAPYTLSGLDTLNPVLTIDGKMKLVGEYIATIGTCLAFS 60

Query: 75  EEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSD 126
           ++                      + +   KK ++ VA +HKILKF+L   D
Sbjct: 61  DKG---------------------DNQTPQKKTVEPVAKLHKILKFRLAPLD 91

[Close]

BLAST of Cucsa.087730 vs. NCBI nr
Match: gi|778673260|ref|XP_004138617.2| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 3.6e-64
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 4   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 63
           MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE
Sbjct: 1   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 64  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLD 123
           ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEP+QATKKELKLVACVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPEQATKKELKLVACVHKILKFKLLD 120

Query: 124 SDVPSSIS 132
           SDVPSSIS
Sbjct: 121 SDVPSSIS 128

[Close]

BLAST of Cucsa.087730 vs. NCBI nr
Match: gi|659081450|ref|XP_008441338.1| (PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo])

HSP 1 Score: 235.0 bits (598), Expect = 7.8e-59
Identity = 118/128 (92.19%), Postives = 120/128 (93.75%), Query Frame = 1


Query: 4   MEKATIDSASDVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 63
           MEKATIDSAS+ EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE
Sbjct: 1   MEKATIDSASNAEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYE 60

Query: 64  ETIGTCLTFAEEEVPVVEEEAQPSETLRCSREEVEPKQATKKELKLVACVHKILKFKLLD 123
           ETIGTCLTFAEEEVPVVEEEAQPSET  CSRE  EPKQAT+KELK  ACVHKILKFKLLD
Sbjct: 61  ETIGTCLTFAEEEVPVVEEEAQPSETNGCSREAAEPKQATRKELKATACVHKILKFKLLD 120

Query: 124 SDVPSSIS 132
           SDVPS IS
Sbjct: 121 SDVPSPIS 128

[Close]

BLAST of Cucsa.087730 vs. NCBI nr
Match: gi|747100477|ref|XP_011098327.1| (PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum indicum])

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-27
Identity = 73/117 (62.39%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 13  SDVEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLT 72
           ++ EEEYVLLDL  VS  + IPPNAPYVLSGLDT+NP+LTI DK K+IGEYEETIGTCL 
Sbjct: 16  AEEEEEYVLLDLDGVSDHVQIPPNAPYVLSGLDTLNPILTIDDKIKLIGEYEETIGTCLV 75

Query: 73  FAE-EEVPVVEEEAQPSET-LRCSREEVEPKQATKKELKLVACVHKILKFKL-LDSD 126
           F E +E P+V EEA PSET L   R  V+PKQ   K++  VA ++K+LKF+L L++D
Sbjct: 76  FNESDEAPIVHEEAGPSETNLFSGRCIVDPKQTPAKQVNAVATLNKVLKFRLFLEAD 132

[Close]

BLAST of Cucsa.087730 vs. NCBI nr
Match: gi|702459925|ref|XP_010027861.1| (PREDICTED: general transcription factor 3C polypeptide 6-like [Eucalyptus grandis])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 7   ATIDSASDVEEEYVLLDLGDV-SLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEET 66
           A  D   ++EEEYVLLDL  V    DI PNAPYVLSGLDT+NP+L I +K K+IG YEET
Sbjct: 5   AAHDDDVEIEEEYVLLDLDSVPEQFDITPNAPYVLSGLDTLNPILVIDNKLKLIGHYEET 64

Query: 67  IGTCLTFAEEEV-PVVEEEAQPSETLRCS-REEVEPKQATKKELKLVACVHKILKFKL-L 126
           IGTC+   EE    +V EE  PSE  + S +  ++P Q   K++K VAC+HKILKFKL +
Sbjct: 65  IGTCIALTEEGTSSIVPEETGPSEANKSSGKSNMDPNQCPSKQVKPVACIHKILKFKLFV 124

Query: 127 DSDVPSS 130
           D++VP +
Sbjct: 125 DTNVPDA 131

[Close]

BLAST of Cucsa.087730 vs. NCBI nr
Match: gi|1009161770|ref|XP_015899074.1| (PREDICTED: uncharacterized protein LOC107432442 [Ziziphus jujuba])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 73/132 (55.30%), Postives = 92/132 (69.70%), Query Frame = 1


Query: 4   MEKATIDSASDVEEEYVLLDLGDVS-LLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEY 63
           ME  T+ +  + +EEYVLLDL  VS  LDIPPNAPYVL+GLDT+NP+L I  K K+IG Y
Sbjct: 1   MEANTVQNNHEDDEEYVLLDLDGVSGQLDIPPNAPYVLTGLDTLNPILIIDGKLKLIGNY 60

Query: 64  EETIGTCLTFAEEEV-PVVEEEAQPSE-TLRCSREEVEPKQATKKELKLVACVHKILKFK 123
           EETIGTCL F EE+  PVV EE  PSE  L   +  ++P QA KK++K V  ++KIL+FK
Sbjct: 61  EETIGTCLVFTEEDTGPVVHEETGPSEANLFSGKCIIDPNQAPKKQVKPVTRLNKILRFK 120

Query: 124 LL-DSDVPSSIS 132
           L  D+D   + S
Sbjct: 121 LAPDADTQDATS 132

The following BLAST results are available for this feature:

BLAST of Cucsa.087730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LML8_CUCSA	2.5e-64	99.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G406680 PE=4 SV=1	[more]
A0A059AM91_EUCGR	1.2e-26	54.33	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00444 PE=4 SV=1	[more]
A0A061F685_THECC	2.1e-26	61.95	Transcription factor TFIIIC, putative isoform 1 OS=Theobroma cacao GN=TCM_031384...	[more]
W9R8U5_9ROSA	3.5e-26	54.26	Uncharacterized protein OS=Morus notabilis GN=L484_025663 PE=4 SV=1	[more]
A0A0B2RX88_GLYSO	4.6e-26	53.91	Leucine-rich repeat-containing protein 40 OS=Glycine soja GN=glysoja_001535 PE=4...	[more]

BLAST of Cucsa.087730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15420.1	8.9e-21	49.12	Transcription factor TFIIIC, tau55-related protein	[more]
AT1G80745.1	5.4e-18	44.64	Transcription factor TFIIIC, tau55-related protein	[more]

BLAST of Cucsa.087730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673260\|ref\|XP_004138617.2\|	3.6e-64	99.22	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis sativus]	[more]
gi\|659081450\|ref\|XP_008441338.1\|	7.8e-59	92.19	PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]	[more]
gi\|747100477\|ref\|XP_011098327.1\|	2.1e-27	62.39	PREDICTED: general transcription factor 3C polypeptide 6 isoform X1 [Sesamum ind...	[more]
gi\|702459925\|ref\|XP_010027861.1\|	1.7e-26	54.33	PREDICTED: general transcription factor 3C polypeptide 6-like [Eucalyptus grandi...	[more]
gi\|1009161770\|ref\|XP_015899074.1\|	1.7e-26	55.30	PREDICTED: uncharacterized protein LOC107432442 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019481	TFIIIC_tau55-rel

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.087730.1	Cucsa.087730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019481	Transcription factor TFIIIC, tau55-related	PFAM	PF10419	TFIIIC_sub6	coord: 38..72 score: 1.2
None	No IPR available	PANTHER	PTHR21860	UNCHARACTERIZED	coord: 15..121 score: 6.3
None	No IPR available	PANTHER	PTHR21860:SF2	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 6	coord: 15..121 score: 6.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.087730	Cla006507	Watermelon (97103) v1	cgywmB102
Cucsa.087730	Csa2G406680	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.087730	MELO3C008192	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.087730	ClCG11G007090	Watermelon (Charleston Gray)	cgywcgB098
Cucsa.087730	CSPI02G25630	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.087730	CmaCh15G000780	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.087730	CmoCh15G000790	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.087730	Lsi03G003960	Bottle gourd (USVL1VR-Ls)	cgylsiB098
Cucsa.087730	MELO3C008192.2	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.087730	Cla97C11G214030	Watermelon (97103) v2	cgywmbB094
Cucsa.087730	Bhi04G001985	Wax gourd	cgywgoB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.087730	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.087730	Cucurbita pepo (Zucchini)	cgycpeB0164
Cucsa.087730	Cucurbita pepo (Zucchini)	cgycpeB0166
Cucsa.087730	Silver-seed gourd	carcgyB0016
Cucsa.087730	Silver-seed gourd	carcgyB1127
Cucsa.087730	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.087730	Cucurbita maxima (Rimu)	cgycmaB0171
Cucsa.087730	Cucurbita moschata (Rifu)	cgycmoB0166