MELO3C007588 (gene) Melon (DHL92) v3.5.1

NameMELO3C007588
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUDP-N-acetylmuramoylalanine--D-glutamate ligase
Locationchr8 : 3904148 .. 3904686 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACATATTCACACAAATTCCCCCACATCTCTCGAGCCCAAGTTTCCCCTACGTTACTATGAGAAGCATGAGCAAGATTTTCATCGGCTTGATTCTGGTGGTTGCGCTGTTGGACAATGGCGGGTTAGTCATTGTAACAGAAGCCAGGCCATTGGGTCTGATGGGCTCGGGCTCGGCGGCAGCAATAGCTGAAGATTTCTTCGAGGGGCTTTCTTTGGGAGCCATTAAGCAGTCGGGTCCCAGCGCCGGCGGCGATGGTCACAAATTCGTTAACTATGACACGTTTGGTGGTATGAAGGATTCTGGCCCCACACCTGGCGATGGACATAGCCACGTCACCTCCTCACATCACTGAGGATGGACGGTCCAACTGTTCATGAGTTCGTTCTGTCGCAACCCCAATGTAGATTAACTAATAACTTGAAAGGGTTGAAAGCTGTCGATGTTATTATATATTTATTTATTTTGTTCTTTTGTTTGATTTTGTGTCATCATACACATTCTTGGATTTGGTTAAACCATTGAAAACATGTTGAAAAG

mRNA sequence

CACATATTCACACAAATTCCCCCACATCTCTCGAGCCCAAGTTTCCCCTACGTTACTATGAGAAGCATGAGCAAGATTTTCATCGGCTTGATTCTGGTGGTTGCGCTGTTGGACAATGGCGGGTTAGTCATTGTAACAGAAGCCAGGCCATTGGGTCTGATGGGCTCGGGCTCGGCGGCAGCAATAGCTGAAGATTTCTTCGAGGGGCTTTCTTTGGGAGCCATTAAGCAGTCGGGTCCCAGCGCCGGCGGCGATGGTCACAAATTCGTTAACTATGACACGTTTGGTGGTATGAAGGATTCTGGCCCCACACCTGGCGATGGACATAGCCACGTCACCTCCTCACATCACTGAGGATGGACGGTCCAACTGTTCATGAGTTCGTTCTGTCGCAACCCCAATGTAGATTAACTAATAACTTGAAAGGGTTGAAAGCTGTCGATGTTATTATATATTTATTTATTTTGTTCTTTTGTTTGATTTTGTGTCATCATACACATTCTTGGATTTGGTTAAACCATTGAAAACATGTTGAAAAG

Coding sequence (CDS)

ATGAGAAGCATGAGCAAGATTTTCATCGGCTTGATTCTGGTGGTTGCGCTGTTGGACAATGGCGGGTTAGTCATTGTAACAGAAGCCAGGCCATTGGGTCTGATGGGCTCGGGCTCGGCGGCAGCAATAGCTGAAGATTTCTTCGAGGGGCTTTCTTTGGGAGCCATTAAGCAGTCGGGTCCCAGCGCCGGCGGCGATGGTCACAAATTCGTTAACTATGACACGTTTGGTGGTATGAAGGATTCTGGCCCCACACCTGGCGATGGACATAGCCACGTCACCTCCTCACATCACTGA

Protein sequence

MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH*
BLAST of MELO3C007588 vs. TrEMBL
Match: A0A0A0KIE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.1e-39
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQ 60
           MRS++ IFIG ILV ALL NGGLV VT+ARPL LM  GSGSAA IAEDFFEGLSLGAIKQ
Sbjct: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH 99
           SGPSAGGDGHKFVNYDT GG+KDSGP PGDGH H+TSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 100

BLAST of MELO3C007588 vs. TrEMBL
Match: A0A059AZU8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 1

Query: 1  MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
          MRS +++ + ++LV+A+L    + +  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1  MRSATRV-LHILLVLAMLC--AVFVANEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61 GPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
          GPS G +GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61 GPSPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

BLAST of MELO3C007588 vs. TrEMBL
Match: A0A059AY97_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01292 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-15
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
           MRS +++ + ++LV+A+L    + I  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFIGNEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61  GPSAG---------------------GDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
           GPS G                     G+GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61  GPSPGEGHRFTNSETLGGIKDSGPSPGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

BLAST of MELO3C007588 vs. TrEMBL
Match: A0A059B1H0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02237 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
           MRS +++ + ++LV+A+L    + +  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61  GPSAG---------------------GDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
           GPS G                     G+GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61  GPSPGEGHKFTNSETLGGIKDSGPSPGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

BLAST of MELO3C007588 vs. TrEMBL
Match: A0A059AZV2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02234 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
           MRS +++ + ++LV+A+L    + +  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61  GPSAG---------------------GDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
           GPS G                     G+GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61  GPSPGEGHKFTNSETLGGIKDSGPSLGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

BLAST of MELO3C007588 vs. TAIR10
Match: AT2G23270.1 (AT2G23270.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-12
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1

Query: 4  MSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSGPSA 63
          M+K+ +G  L   L+ +     V EARPLGL  + +   +   FF+GLSLGAIK+SGPS+
Sbjct: 3  MNKVVLGSFLFFMLVSSN---FVVEARPLGL--TKAEENLVAKFFDGLSLGAIKESGPSS 62

Query: 64 GGDGHKFVN-YDTFGGMKDSGP-TPGDGH 91
          GG+GH+FV+  +T    K SGP T G GH
Sbjct: 63 GGEGHRFVDRTETLEYGKHSGPSTSGPGH 86

BLAST of MELO3C007588 vs. TAIR10
Match: AT4G37290.1 (AT4G37290.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-09
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 1

Query: 4  MSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSGPSA 63
          M+K  +  IL   L+ +    ++ E+RPLGL  + +        F+GLSLG+IK SGPS 
Sbjct: 3  MNKNVLSSILFFMLIGS----VLVESRPLGL--TKTEEKFVASLFDGLSLGSIKDSGPSP 62

Query: 64 GGDGHKFVN-YDTFGGMKDSGPTP-GDGH 91
           G+GHK V+  DTF  +K SGP+P G GH
Sbjct: 63 -GEGHKVVDRKDTFRFVKHSGPSPSGPGH 84

BLAST of MELO3C007588 vs. NCBI nr
Match: gi|659079571|ref|XP_008440327.1| (PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo])

HSP 1 Score: 199.1 bits (505), Expect = 3.5e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1

Query: 1  MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSG 60
          MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSG
Sbjct: 1  MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSG 60

Query: 61 PSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH 99
          PSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH
Sbjct: 61 PSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH 98

BLAST of MELO3C007588 vs. NCBI nr
Match: gi|700193355|gb|KGN48559.1| (hypothetical protein Csa_6G491710 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 8.7e-39
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQ 60
           MRS++ IFIG ILV ALL NGGLV VT+ARPL LM  GSGSAA IAEDFFEGLSLGAIKQ
Sbjct: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH 99
           SGPSAGGDGHKFVNYDT GG+KDSGP PGDGH H+TSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 100

BLAST of MELO3C007588 vs. NCBI nr
Match: gi|629093492|gb|KCW59487.1| (hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis])

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-16
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 1

Query: 1  MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
          MRS +++ + ++LV+A+L    + +  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1  MRSATRV-LHILLVLAMLC--AVFVANEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61 GPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
          GPS G +GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61 GPSPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

BLAST of MELO3C007588 vs. NCBI nr
Match: gi|702453318|ref|XP_010026175.1| (PREDICTED: uncharacterized protein LOC104416483 [Eucalyptus grandis])

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
           MRS +++ + ++LV+A+L    + I  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFIGNEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61  GPSAG---------------------GDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
           GPS G                     G+GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61  GPSPGEGHRFTNSETLGGIKDSGPSPGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

BLAST of MELO3C007588 vs. NCBI nr
Match: gi|629093500|gb|KCW59495.1| (hypothetical protein EUGRSUZ_H02237 [Eucalyptus grandis])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1

Query: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIA-EDFFEGLSLGAIKQS 60
           MRS +++ + ++LV+A+L    + +  EARP  +M + +   +A   FF+GLSLGAIKQ+
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMETKAPVGVACGGFFDGLSLGAIKQA 60

Query: 61  GPSAG---------------------GDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 98
           GPS G                     G+GHKF N +T GG+KDSGP+PG+GH HVT ++
Sbjct: 61  GPSPGEGHKFTNSETLGGIKDSGPSPGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIE2_CUCSA6.1e-3983.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1[more]
A0A059AZU8_EUCGR3.2e-1648.98Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1[more]
A0A059AY97_EUCGR8.0e-1542.02Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01292 PE=4 SV=1[more]
A0A059B1H0_EUCGR1.0e-1441.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02237 PE=4 SV=1[more]
A0A059AZV2_EUCGR1.0e-1441.18Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02234 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G23270.11.9e-1247.19 unknown protein[more]
AT4G37290.14.5e-0943.82 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659079571|ref|XP_008440327.1|3.5e-48100.00PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo][more]
gi|700193355|gb|KGN48559.1|8.7e-3983.00hypothetical protein Csa_6G491710 [Cucumis sativus][more]
gi|629093492|gb|KCW59487.1|4.7e-1648.98hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis][more]
gi|702453318|ref|XP_010026175.1|1.1e-1442.02PREDICTED: uncharacterized protein LOC104416483 [Eucalyptus grandis][more]
gi|629093500|gb|KCW59495.1|1.5e-1441.18hypothetical protein EUGRSUZ_H02237 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU53275melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007588T1MELO3C007588T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU53275MU53275transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34663FAMILY NOT NAMEDcoord: 1..98
score: 7.9
NoneNo IPR availablePANTHERPTHR34663:SF2SUBFAMILY NOT NAMEDcoord: 1..98
score: 7.9

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C007588Watermelon (97103) v1mewmB557
MELO3C007588Watermelon (97103) v1mewmB568
MELO3C007588Cucurbita pepo (Zucchini)cpemeB060
MELO3C007588Cucurbita pepo (Zucchini)cpemeB110
MELO3C007588Cucurbita pepo (Zucchini)cpemeB208
MELO3C007588Cucurbita pepo (Zucchini)cpemeB282
MELO3C007588Cucurbita pepo (Zucchini)cpemeB435
MELO3C007588Cucurbita pepo (Zucchini)cpemeB706
MELO3C007588Cucurbita pepo (Zucchini)cpemeB787
MELO3C007588Bottle gourd (USVL1VR-Ls)lsimeB388
MELO3C007588Bottle gourd (USVL1VR-Ls)lsimeB490
MELO3C007588Cucumber (Gy14) v2cgybmeB135
MELO3C007588Cucumber (Gy14) v2cgybmeB444
MELO3C007588Silver-seed gourdcarmeB0188
MELO3C007588Silver-seed gourdcarmeB0386
MELO3C007588Silver-seed gourdcarmeB0414
MELO3C007588Cucumber (Chinese Long) v3cucmeB157
MELO3C007588Cucumber (Chinese Long) v3cucmeB265
MELO3C007588Cucumber (Chinese Long) v3cucmeB587
MELO3C007588Watermelon (97103) v2mewmbB513
MELO3C007588Watermelon (97103) v2mewmbB549
MELO3C007588Watermelon (97103) v2mewmbB553
MELO3C007588Wax gourdmewgoB624
MELO3C007588Cucurbita moschata (Rifu)cmomeB793
MELO3C007588Melon (DHL92) v3.5.1memeB101
MELO3C007588Melon (DHL92) v3.5.1memeB130
MELO3C007588Melon (DHL92) v3.5.1memeB156
MELO3C007588Cucumber (Gy14) v1cgymeB384
MELO3C007588Cucumber (Gy14) v1cgymeB648
MELO3C007588Cucurbita maxima (Rimu)cmameB184
MELO3C007588Cucurbita maxima (Rimu)cmameB311
MELO3C007588Cucurbita maxima (Rimu)cmameB485
MELO3C007588Cucurbita maxima (Rimu)cmameB584
MELO3C007588Cucurbita maxima (Rimu)cmameB617
MELO3C007588Cucurbita maxima (Rimu)cmameB711
MELO3C007588Cucurbita maxima (Rimu)cmameB745
MELO3C007588Cucurbita maxima (Rimu)cmameB809
MELO3C007588Cucurbita moschata (Rifu)cmomeB172
MELO3C007588Cucurbita moschata (Rifu)cmomeB304
MELO3C007588Cucurbita moschata (Rifu)cmomeB477
MELO3C007588Cucurbita moschata (Rifu)cmomeB510
MELO3C007588Cucurbita moschata (Rifu)cmomeB575
MELO3C007588Cucurbita moschata (Rifu)cmomeB605
MELO3C007588Cucurbita moschata (Rifu)cmomeB703
MELO3C007588Cucurbita moschata (Rifu)cmomeB734
MELO3C007588Wild cucumber (PI 183967)cpimeB156
MELO3C007588Cucumber (Chinese Long) v2cumeB155
MELO3C007588Cucumber (Chinese Long) v2cumeB265
MELO3C007588Cucumber (Chinese Long) v2cumeB327
MELO3C007588Cucumber (Chinese Long) v2cumeB565
MELO3C007588Watermelon (Charleston Gray)mewcgB540
MELO3C007588Watermelon (Charleston Gray)mewcgB544