Csa6G491710 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G491710
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ABC transporter family protein
Location	Chr6 : 23672922 .. 23673267 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGCATCACCAACATTTTCATCGGCTTCATTCTGGTGGCTGCGCTATTGGGCAATGGCGGGTTAGTTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGAAGATGGAAAGTCCAAATGTTCGTTCGTTAGTTCAGTCGCAACT

mRNA sequence

ATGAGGAGCATCACCAACATTTTCATCGGCTTCATTCTGGTGGCTGCGCTATTGGGCAATGGCGGGTTAGTTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

Coding sequence (CDS)

ATGAGGAGCATCACCAACATTTTCATCGGCTTCATTCTGGTGGCTGCGCTATTGGGCAATGGCGGGTTAGTTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

Protein sequence

MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH*

Homology

[Close]

BLAST of Csa6G491710 vs. TrEMBL
Match: A0A0A0KIE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ
Sbjct: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 100

[Close]

BLAST of Csa6G491710 vs. TrEMBL
Match: A0A059AZU8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLC--AVFVANEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G +GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

[Close]

BLAST of Csa6G491710 vs. TrEMBL
Match: D7TTE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.0e-14
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 8   FIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 67
           F+ F+ +  +L +  +      RP  +++   G        FF+GLSLGAIKQSGPS G 
Sbjct: 7   FVSFLFLVLVLNSIAI----HGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPG- 66

Query: 68  DGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           +GHKF N  TLGGIKDSGP+PG+GH+++    H
Sbjct: 67  NGHKFTNAGTLGGIKDSGPSPGEGHKYVDGMPH 94

[Close]

BLAST of Csa6G491710 vs. TrEMBL
Match: A0A059AZV2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02234 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAG---------------------GDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G                     G+GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPGEGHKFTNSETLGGIKDSGPSLGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

[Close]

BLAST of Csa6G491710 vs. TrEMBL
Match: A0A059B1H0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02237 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAG---------------------GDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G                     G+GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPGEGHKFTNSETLGGIKDSGPSPGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

[Close]

BLAST of Csa6G491710 vs. TAIR10
Match: AT2G23270.1 (AT2G23270.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-10
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1


Query: 8  FIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 67
          F+ F+LV++         V +ARPL L +    +   +   FF+GLSLGAIK+SGPS+GG
Sbjct: 11 FLFFMLVSSNF-------VVEARPLGLTK----AEENLVAKFFDGLSLGAIKESGPSSGG 70

Query: 68 DGHKFVN-YDTLGGIKDSGPA-PGDGH 93
          +GH+FV+  +TL   K SGP+  G GH
Sbjct: 71 EGHRFVDRTETLEYGKHSGPSTSGPGH 86

[Close]

BLAST of Csa6G491710 vs. TAIR10
Match: AT4G37290.1 (AT4G37290.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.5e-07
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 2  RSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQS 61
          +++ +  + F+L+ ++L         ++RPL L +      A++    F+GLSLG+IK S
Sbjct: 5  KNVLSSILFFMLIGSVL--------VESRPLGLTKTEEKFVASL----FDGLSLGSIKDS 64

Query: 62 GPSAGGDGHKFVN-YDTLGGIKDSGPAP-GDGH 93
          GPS  G+GHK V+  DT   +K SGP+P G GH
Sbjct: 65 GPSP-GEGHKVVDRKDTFRFVKHSGPSPSGPGH 84

[Close]

BLAST of Csa6G491710 vs. NCBI nr
Match: gi|700193355|gb|KGN48559.1| (hypothetical protein Csa_6G491710 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ
Sbjct: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 100

[Close]

BLAST of Csa6G491710 vs. NCBI nr
Match: gi|659079571|ref|XP_008440327.1| (PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 8.9e-39
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS++ IFIG ILV ALL NGGLV VT+ARPL LM  GSGSAA IAEDFFEGLSLGAIKQ
Sbjct: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           SGPSAGGDGHKFVNYDT GG+KDSGP PGDGH H+TSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH 98

[Close]

BLAST of Csa6G491710 vs. NCBI nr
Match: gi|629093492|gb|KCW59487.1| (hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLC--AVFVANEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G +GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

[Close]

BLAST of Csa6G491710 vs. NCBI nr
Match: gi|731397109|ref|XP_010652763.1| (PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 8   FIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 67
           F+ F+ +  +L +  +      RP  +++   G        FF+GLSLGAIKQSGPS G 
Sbjct: 7   FVSFLFLVLVLNSIAI----HGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPG- 66

Query: 68  DGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           +GHKF N  TLGGIKDSGP+PG+GH+++    H
Sbjct: 67  NGHKFTNAGTLGGIKDSGPSPGEGHKYVDGMPH 94

[Close]

BLAST of Csa6G491710 vs. NCBI nr
Match: gi|694313665|ref|XP_009367699.1| (PREDICTED: hyphally-regulated protein-like [Pyrus x bretschneideri])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 4  ITNIFIGFILVAALLGNGGLVTVTDARPLTLMRL-GSGSAATIAEDFFEGLSLGAIKQSG 63
          +T  F  FIL   LL N   + V  ARPL +M+   SG  AT  E FF+GLSLGAIKQSG
Sbjct: 1  MTTKFFSFILFLLLL-NSTFIAVC-ARPLNIMKYRSSGFGAT--EGFFDGLSLGAIKQSG 60

Query: 64 PSAGGDGHKFVNYDTLGGIKDSGPAPGDGH 93
          PS G +GHKF N  TLGGIK+SGP+PG G+
Sbjct: 61 PSPG-EGHKFTNKQTLGGIKNSGPSPGTGN 85

The following BLAST results are available for this feature:

BLAST of Csa6G491710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIE2_CUCSA	1.3e-49	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1	[more]
A0A059AZU8_EUCGR	6.2e-15	48.48	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1	[more]
D7TTE3_VITVI	9.0e-14	45.16	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=...	[more]
A0A059AZV2_EUCGR	2.0e-13	40.83	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02234 PE=4 SV=1	[more]
A0A059B1H0_EUCGR	2.0e-13	40.83	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02237 PE=4 SV=1	[more]

BLAST of Csa6G491710 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23270.1	5.4e-10	44.83	unknown protein	[more]
AT4G37290.1	2.5e-07	37.63	unknown protein	[more]

BLAST of Csa6G491710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193355\|gb\|KGN48559.1\|	1.9e-49	100.00	hypothetical protein Csa_6G491710 [Cucumis sativus]	[more]
gi\|659079571\|ref\|XP_008440327.1\|	8.9e-39	83.00	PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo]	[more]
gi\|629093492\|gb\|KCW59487.1\|	9.0e-15	48.48	hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis]	[more]
gi\|731397109\|ref\|XP_010652763.1\|	1.3e-13	45.16	PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera]	[more]
gi\|694313665\|ref\|XP_009367699.1\|	1.3e-13	57.78	PREDICTED: hyphally-regulated protein-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G491710.1	Csa6G491710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34663	FAMILY NOT NAMED	coord: 1..100 score: 8.8
None	No IPR available	PANTHER	PTHR34663:SF1	SUBFAMILY NOT NAMED	coord: 1..100 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G491710	Cla013982	Watermelon (97103) v1	cuwmB500
Csa6G491710	MELO3C007588	Melon (DHL92) v3.5.1	cumeB503
Csa6G491710	ClCG01G017110	Watermelon (Charleston Gray)	cuwcgB432
Csa6G491710	Lsi01G009460	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G491710	MELO3C007588.2	Melon (DHL92) v3.6.1	cumedB483
Csa6G491710	Bhi03G000732	Wax gourd	cuwgoB621
Csa6G491710	CSPI06G28430	Wild cucumber (PI 183967)	cpicuB313
Csa6G491710	Cucsa.102730	Cucumber (Gy14) v1	cgycuB121
Csa6G491710	Cp4.1LG19g10920	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G491710	Carg05196	Silver-seed gourd	carcuB0826

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G491710	Silver-seed gourd	carcuB0205
Csa6G491710	Silver-seed gourd	carcuB0409
Csa6G491710	Silver-seed gourd	carcuB0441
Csa6G491710	Watermelon (97103) v2	cuwmbB412
Csa6G491710	Watermelon (97103) v2	cuwmbB494
Csa6G491710	Wax gourd	cuwgoB577
Csa6G491710	Cucumber (Chinese Long) v2	cucuB072
Csa6G491710	Cucumber (Chinese Long) v2	cucuB143
Csa6G491710	Cucumber (Chinese Long) v2	cucuB173
Csa6G491710	Cucumber (Gy14) v1	cgycuB552
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB144
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB347
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB560
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB626
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB681
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB775
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB809
Csa6G491710	Cucurbita maxima (Rimu)	cmacuB877
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB176
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB337
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB548
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB617
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB670
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB766
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB801
Csa6G491710	Cucurbita moschata (Rifu)	cmocuB865
Csa6G491710	Melon (DHL92) v3.5.1	cumeB470
Csa6G491710	Melon (DHL92) v3.5.1	cumeB464
Csa6G491710	Watermelon (Charleston Gray)	cuwcgB503
Csa6G491710	Watermelon (97103) v1	cuwmB461
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB085
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB124
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB229
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB297
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB468
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB583
Csa6G491710	Cucurbita pepo (Zucchini)	cpecuB763
Csa6G491710	Bottle gourd (USVL1VR-Ls)	culsiB474
Csa6G491710	Cucumber (Gy14) v2	cgybcuB082
Csa6G491710	Cucumber (Gy14) v2	cgybcuB281
Csa6G491710	Melon (DHL92) v3.6.1	cumedB445
Csa6G491710	Melon (DHL92) v3.6.1	cumedB452