Csa6G491710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G491710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionABC transporter family protein
LocationChr6 : 23672922 .. 23673267 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGCATCACCAACATTTTCATCGGCTTCATTCTGGTGGCTGCGCTATTGGGCAATGGCGGGTTAGTTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGAAGATGGAAAGTCCAAATGTTCGTTCGTTAGTTCAGTCGCAACT

mRNA sequence

ATGAGGAGCATCACCAACATTTTCATCGGCTTCATTCTGGTGGCTGCGCTATTGGGCAATGGCGGGTTAGTTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

Coding sequence (CDS)

ATGAGGAGCATCACCAACATTTTCATCGGCTTCATTCTGGTGGCTGCGCTATTGGGCAATGGCGGGTTAGTTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

Protein sequence

MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH*
Homology
[Close]
BLAST of Csa6G491710 vs. TrEMBL
Match: A0A0A0KIE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ
Sbjct: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 100

[Close]
BLAST of Csa6G491710 vs. TrEMBL
Match: A0A059AZU8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.2e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLC--AVFVANEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G +GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

[Close]
BLAST of Csa6G491710 vs. TrEMBL
Match: D7TTE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.0e-14
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 1 

Query: 8   FIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 67
           F+ F+ +  +L +  +      RP  +++   G        FF+GLSLGAIKQSGPS G 
Sbjct: 7   FVSFLFLVLVLNSIAI----HGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPG- 66

Query: 68  DGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           +GHKF N  TLGGIKDSGP+PG+GH+++    H
Sbjct: 67  NGHKFTNAGTLGGIKDSGPSPGEGHKYVDGMPH 94

[Close]
BLAST of Csa6G491710 vs. TrEMBL
Match: A0A059AZV2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02234 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAG---------------------GDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G                     G+GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPGEGHKFTNSETLGGIKDSGPSLGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

[Close]
BLAST of Csa6G491710 vs. TrEMBL
Match: A0A059B1H0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02237 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 49/120 (40.83%), Postives = 65/120 (54.17%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLS--AVFVGNEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAG---------------------GDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G                     G+GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPGEGHKFTNSETLGGIKDSGPSPGEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

[Close]
BLAST of Csa6G491710 vs. TAIR10
Match: AT2G23270.1 (AT2G23270.1 unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-10
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 8  FIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 67
          F+ F+LV++         V +ARPL L +    +   +   FF+GLSLGAIK+SGPS+GG
Sbjct: 11 FLFFMLVSSNF-------VVEARPLGLTK----AEENLVAKFFDGLSLGAIKESGPSSGG 70

Query: 68 DGHKFVN-YDTLGGIKDSGPA-PGDGH 93
          +GH+FV+  +TL   K SGP+  G GH
Sbjct: 71 EGHRFVDRTETLEYGKHSGPSTSGPGH 86

[Close]
BLAST of Csa6G491710 vs. TAIR10
Match: AT4G37290.1 (AT4G37290.1 unknown protein)

HSP 1 Score: 52.0 bits (123), Expect = 2.5e-07
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1 

Query: 2  RSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQS 61
          +++ +  + F+L+ ++L         ++RPL L +      A++    F+GLSLG+IK S
Sbjct: 5  KNVLSSILFFMLIGSVL--------VESRPLGLTKTEEKFVASL----FDGLSLGSIKDS 64

Query: 62 GPSAGGDGHKFVN-YDTLGGIKDSGPAP-GDGH 93
          GPS  G+GHK V+  DT   +K SGP+P G GH
Sbjct: 65 GPSP-GEGHKVVDRKDTFRFVKHSGPSPSGPGH 84

[Close]
BLAST of Csa6G491710 vs. NCBI nr
Match: gi|700193355|gb|KGN48559.1| (hypothetical protein Csa_6G491710 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ
Sbjct: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 100

[Close]
BLAST of Csa6G491710 vs. NCBI nr
Match: gi|659079571|ref|XP_008440327.1| (PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo])

HSP 1 Score: 167.9 bits (424), Expect = 8.9e-39
Identity = 83/100 (83.00%), Postives = 88/100 (88.00%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS++ IFIG ILV ALL NGGLV VT+ARPL LM  GSGSAA IAEDFFEGLSLGAIKQ
Sbjct: 1   MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           SGPSAGGDGHKFVNYDT GG+KDSGP PGDGH H+TSSHH
Sbjct: 61  SGPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSHH 98

[Close]
BLAST of Csa6G491710 vs. NCBI nr
Match: gi|629093492|gb|KCW59487.1| (hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis])

HSP 1 Score: 88.2 bits (217), Expect = 9.0e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1 

Query: 1   MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60
           MRS T + +  +LV A+L    +    +ARP  +M             FF+GLSLGAIKQ
Sbjct: 1   MRSATRV-LHILLVLAMLC--AVFVANEARPFNVMET-KAPVGVACGGFFDGLSLGAIKQ 60

Query: 61  SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 100
           +GPS G +GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 61  AGPSPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

[Close]
BLAST of Csa6G491710 vs. NCBI nr
Match: gi|731397109|ref|XP_010652763.1| (PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 1 

Query: 8   FIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGG 67
           F+ F+ +  +L +  +      RP  +++   G        FF+GLSLGAIKQSGPS G 
Sbjct: 7   FVSFLFLVLVLNSIAI----HGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPG- 66

Query: 68  DGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH 101
           +GHKF N  TLGGIKDSGP+PG+GH+++    H
Sbjct: 67  NGHKFTNAGTLGGIKDSGPSPGEGHKYVDGMPH 94

[Close]
BLAST of Csa6G491710 vs. NCBI nr
Match: gi|694313665|ref|XP_009367699.1| (PREDICTED: hyphally-regulated protein-like [Pyrus x bretschneideri])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 52/90 (57.78%), Postives = 61/90 (67.78%), Query Frame = 1 

Query: 4  ITNIFIGFILVAALLGNGGLVTVTDARPLTLMRL-GSGSAATIAEDFFEGLSLGAIKQSG 63
          +T  F  FIL   LL N   + V  ARPL +M+   SG  AT  E FF+GLSLGAIKQSG
Sbjct: 1  MTTKFFSFILFLLLL-NSTFIAVC-ARPLNIMKYRSSGFGAT--EGFFDGLSLGAIKQSG 60

Query: 64 PSAGGDGHKFVNYDTLGGIKDSGPAPGDGH 93
          PS G +GHKF N  TLGGIK+SGP+PG G+
Sbjct: 61 PSPG-EGHKFTNKQTLGGIKNSGPSPGTGN 85

The following BLAST results are available for this feature:
BLAST of Csa6G491710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIE2_CUCSA1.3e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1[more]
A0A059AZU8_EUCGR6.2e-1548.48Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1[more]
D7TTE3_VITVI9.0e-1445.16Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=... [more]
A0A059AZV2_EUCGR2.0e-1340.83Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02234 PE=4 SV=1[more]
A0A059B1H0_EUCGR2.0e-1340.83Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02237 PE=4 SV=1[more]
BLAST of Csa6G491710 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23270.15.4e-1044.83 unknown protein[more]
AT4G37290.12.5e-0737.63 unknown protein[more]
BLAST of Csa6G491710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193355|gb|KGN48559.1|1.9e-49100.00hypothetical protein Csa_6G491710 [Cucumis sativus][more]
gi|659079571|ref|XP_008440327.1|8.9e-3983.00PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo][more]
gi|629093492|gb|KCW59487.1|9.0e-1548.48hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis][more]
gi|731397109|ref|XP_010652763.1|1.3e-1345.16PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera][more]
gi|694313665|ref|XP_009367699.1|1.3e-1357.78PREDICTED: hyphally-regulated protein-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G491710.1Csa6G491710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34663FAMILY NOT NAMEDcoord: 1..100
score: 8.8
NoneNo IPR availablePANTHERPTHR34663:SF1SUBFAMILY NOT NAMEDcoord: 1..100
score: 8.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G491710Cla013982Watermelon (97103) v1cuwmB500
Csa6G491710MELO3C007588Melon (DHL92) v3.5.1cumeB503
Csa6G491710ClCG01G017110Watermelon (Charleston Gray)cuwcgB432
Csa6G491710Lsi01G009460Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G491710MELO3C007588.2Melon (DHL92) v3.6.1cumedB483
Csa6G491710Bhi03G000732Wax gourdcuwgoB621
Csa6G491710CSPI06G28430Wild cucumber (PI 183967)cpicuB313
Csa6G491710Cucsa.102730Cucumber (Gy14) v1cgycuB121
Csa6G491710Cp4.1LG19g10920Cucurbita pepo (Zucchini)cpecuB503
Csa6G491710Carg05196Silver-seed gourdcarcuB0826
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G491710Watermelon (97103) v2cuwmbB412
Csa6G491710Watermelon (97103) v2cuwmbB494
Csa6G491710Wax gourdcuwgoB577
Csa6G491710Cucumber (Chinese Long) v2cucuB072
Csa6G491710Cucumber (Chinese Long) v2cucuB143
Csa6G491710Cucumber (Chinese Long) v2cucuB173
Csa6G491710Cucumber (Gy14) v1cgycuB552
Csa6G491710Cucurbita maxima (Rimu)cmacuB144
Csa6G491710Cucurbita maxima (Rimu)cmacuB347
Csa6G491710Cucurbita maxima (Rimu)cmacuB560
Csa6G491710Cucurbita maxima (Rimu)cmacuB626
Csa6G491710Cucurbita maxima (Rimu)cmacuB681
Csa6G491710Cucurbita maxima (Rimu)cmacuB775
Csa6G491710Cucurbita maxima (Rimu)cmacuB809
Csa6G491710Cucurbita maxima (Rimu)cmacuB877
Csa6G491710Cucurbita moschata (Rifu)cmocuB176
Csa6G491710Cucurbita moschata (Rifu)cmocuB337
Csa6G491710Cucurbita moschata (Rifu)cmocuB548
Csa6G491710Cucurbita moschata (Rifu)cmocuB617
Csa6G491710Cucurbita moschata (Rifu)cmocuB670
Csa6G491710Cucurbita moschata (Rifu)cmocuB766
Csa6G491710Cucurbita moschata (Rifu)cmocuB801
Csa6G491710Cucurbita moschata (Rifu)cmocuB865
Csa6G491710Melon (DHL92) v3.5.1cumeB470
Csa6G491710Melon (DHL92) v3.5.1cumeB464
Csa6G491710Watermelon (Charleston Gray)cuwcgB503
Csa6G491710Watermelon (97103) v1cuwmB461
Csa6G491710Cucurbita pepo (Zucchini)cpecuB085
Csa6G491710Cucurbita pepo (Zucchini)cpecuB124
Csa6G491710Cucurbita pepo (Zucchini)cpecuB229
Csa6G491710Cucurbita pepo (Zucchini)cpecuB297
Csa6G491710Cucurbita pepo (Zucchini)cpecuB468
Csa6G491710Cucurbita pepo (Zucchini)cpecuB583
Csa6G491710Cucurbita pepo (Zucchini)cpecuB763
Csa6G491710Bottle gourd (USVL1VR-Ls)culsiB474
Csa6G491710Cucumber (Gy14) v2cgybcuB082
Csa6G491710Cucumber (Gy14) v2cgybcuB281
Csa6G491710Melon (DHL92) v3.6.1cumedB445
Csa6G491710Melon (DHL92) v3.6.1cumedB452
Csa6G491710Silver-seed gourdcarcuB0205
Csa6G491710Silver-seed gourdcarcuB0409
Csa6G491710Silver-seed gourdcarcuB0441