Cucsa.102730 (gene) Cucumber (Gy14) v1

NameCucsa.102730
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTransmembrane protein, putative
Locationscaffold00927 : 1699453 .. 1699685 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

mRNA sequence

TTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

Coding sequence (CDS)

TTACTGTAACAGACGCCAGGCCATTGACCCTCATGCGCTTGGGCTCGGGCTCGGCGGCAACAATAGCTGAAGATTTCTTTGAAGGCCTTTCTTTGGGAGCCATTAAGCAGTCAGGTCCCAGCGCTGGTGGAGATGGTCACAAATTTGTTAATTACGACACGCTTGGAGGTATCAAGGATTCGGGCCCCGCACCTGGAGATGGACATAGACACATCACCTCCTCACATCATTGA

Protein sequence

TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSHH*
BLAST of Cucsa.102730 vs. TrEMBL
Match: A0A0A0KIE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1   TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDS 60
           TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDS
Sbjct: 25  TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDS 84

Query: 61  GPAPGDGHRHITSSHH 77
           GPAPGDGHRHITSSHH
Sbjct: 85  GPAPGDGHRHITSSHH 100

BLAST of Cucsa.102730 vs. TrEMBL
Match: A0A059AZU8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 4  DARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPA 63
          +ARP  +M             FF+GLSLGAIKQ+GPS G +GHKF N +TLGGIKDSGP+
Sbjct: 25 EARPFNVMET-KAPVGVACGGFFDGLSLGAIKQAGPSPG-EGHKFTNSETLGGIKDSGPS 84

Query: 64 PGDGHRHITSSH 76
          PG+GH H+T ++
Sbjct: 85 PGEGHGHVTGTN 94

BLAST of Cucsa.102730 vs. TrEMBL
Match: D7TTE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1

Query: 6  RPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPAPG 65
          RP  +++   G        FF+GLSLGAIKQSGPS G +GHKF N  TLGGIKDSGP+PG
Sbjct: 25 RPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPG-NGHKFTNAGTLGGIKDSGPSPG 84

Query: 66 DGHRHITSSHH 77
          +GH+++    H
Sbjct: 85 EGHKYVDGMPH 94

BLAST of Cucsa.102730 vs. TrEMBL
Match: V7CCF8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1

Query: 4  DARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPA 63
          +ARPL++   G G       DFF+ LSLGAIK+SGPS GG GH+F N +TLGGIKDSGP+
Sbjct: 26 EARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKGHRFTNSNTLGGIKDSGPS 85

Query: 64 P-GDGHRHITS 74
            G+GH+   S
Sbjct: 86 SGGEGHKFTNS 93

BLAST of Cucsa.102730 vs. TrEMBL
Match: V7CCF8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-10
Identity = 40/88 (45.45%), Postives = 48/88 (54.55%), Query Frame = 1

Query: 4   DARPLTLMRLGSGSAATIAEDFFEGLSLGAI-----------------------KQSGPS 63
           +ARPL++   G G       DFF+ LSLGAI                       K SGPS
Sbjct: 26  EARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKGHRFTNSNTLGGIKDSGPS 85

Query: 64  AGGDGHKFVNYDTLGGIKDSGPAPGDGH 69
           +GG+GHKF N +TLGGIK+SGP PG GH
Sbjct: 86  SGGEGHKFTNSETLGGIKESGPTPGQGH 110


HSP 2 Score: 78.6 bits (192), Expect = 3.8e-12
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 1

Query: 4   DARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAG--------------------- 63
           +ARP  +M             FF+GLSLGAIKQ+GPS G                     
Sbjct: 25  EARPFNVMET-KAPVGVACGGFFDGLSLGAIKQAGPSPGEGHKFTNSETLGGIKDSGPSL 84

Query: 64  GDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 76
           G+GHKF N +TLGGIKDSGP+PG+GH H+T ++
Sbjct: 85  GEGHKFTNLETLGGIKDSGPSPGEGHGHVTGTN 116

BLAST of Cucsa.102730 vs. TAIR10
Match: AT2G23270.1 (AT2G23270.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-10
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1

Query: 2  VTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVN-YDTLGGIKDS 61
          V +ARPL L +    +   +   FF+GLSLGAIK+SGPS+GG+GH+FV+  +TL   K S
Sbjct: 22 VVEARPLGLTK----AEENLVAKFFDGLSLGAIKESGPSSGGEGHRFVDRTETLEYGKHS 81

Query: 62 GPA-PGDGH 69
          GP+  G GH
Sbjct: 82 GPSTSGPGH 86

BLAST of Cucsa.102730 vs. TAIR10
Match: AT4G37290.1 (AT4G37290.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.3e-07
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1

Query: 2  VTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVN-YDTLGGIKDS 61
          + ++RPL L +      A++    F+GLSLG+IK SGPS  G+GHK V+  DT   +K S
Sbjct: 21 LVESRPLGLTKTEEKFVASL----FDGLSLGSIKDSGPSP-GEGHKVVDRKDTFRFVKHS 80

Query: 62 GPAP-GDGH 69
          GP+P G GH
Sbjct: 81 GPSPSGPGH 84

BLAST of Cucsa.102730 vs. NCBI nr
Match: gi|700193355|gb|KGN48559.1| (hypothetical protein Csa_6G491710 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1   TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDS 60
           TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDS
Sbjct: 25  TVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDS 84

Query: 61  GPAPGDGHRHITSSHH 77
           GPAPGDGHRHITSSHH
Sbjct: 85  GPAPGDGHRHITSSHH 100

BLAST of Cucsa.102730 vs. NCBI nr
Match: gi|659079571|ref|XP_008440327.1| (PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-29
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1

Query: 2  VTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSG 61
          VT+ARPL LM  GSGSAA IAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDT GG+KDSG
Sbjct: 26 VTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTFGGMKDSG 85

Query: 62 PAPGDGHRHITSSHH 77
          P PGDGH H+TSSHH
Sbjct: 86 PTPGDGHSHVTSSHH 98

BLAST of Cucsa.102730 vs. NCBI nr
Match: gi|629093492|gb|KCW59487.1| (hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis])

HSP 1 Score: 83.6 bits (205), Expect = 1.7e-13
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 4  DARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPA 63
          +ARP  +M             FF+GLSLGAIKQ+GPS G +GHKF N +TLGGIKDSGP+
Sbjct: 25 EARPFNVMET-KAPVGVACGGFFDGLSLGAIKQAGPSPG-EGHKFTNSETLGGIKDSGPS 84

Query: 64 PGDGHRHITSSH 76
          PG+GH H+T ++
Sbjct: 85 PGEGHGHVTGTN 94

BLAST of Cucsa.102730 vs. NCBI nr
Match: gi|731397109|ref|XP_010652763.1| (PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera])

HSP 1 Score: 82.4 bits (202), Expect = 3.8e-13
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1

Query: 6  RPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPAPG 65
          RP  +++   G        FF+GLSLGAIKQSGPS G +GHKF N  TLGGIKDSGP+PG
Sbjct: 25 RPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPG-NGHKFTNAGTLGGIKDSGPSPG 84

Query: 66 DGHRHITSSHH 77
          +GH+++    H
Sbjct: 85 EGHKYVDGMPH 94

BLAST of Cucsa.102730 vs. NCBI nr
Match: gi|694313665|ref|XP_009367699.1| (PREDICTED: hyphally-regulated protein-like [Pyrus x bretschneideri])

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 1

Query: 5  ARPLTLMRL-GSGSAATIAEDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTLGGIKDSGPA 64
          ARPL +M+   SG  AT  E FF+GLSLGAIKQSGPS G +GHKF N  TLGGIK+SGP+
Sbjct: 24 ARPLNIMKYRSSGFGAT--EGFFDGLSLGAIKQSGPSPG-EGHKFTNKQTLGGIKNSGPS 83

Query: 65 PGDGH 69
          PG G+
Sbjct: 84 PGTGN 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIE2_CUCSA2.2e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1[more]
A0A059AZU8_EUCGR1.2e-1355.56Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02229 PE=4 SV=1[more]
D7TTE3_VITVI2.6e-1354.93Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=... [more]
V7CCF8_PHAVU3.8e-1256.34Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1[more]
V7CCF8_PHAVU4.6e-1045.45Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G23270.15.4e-1050.72 unknown protein[more]
AT4G37290.14.3e-0746.38 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700193355|gb|KGN48559.1|3.2e-36100.00hypothetical protein Csa_6G491710 [Cucumis sativus][more]
gi|659079571|ref|XP_008440327.1|3.7e-2986.67PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo][more]
gi|629093492|gb|KCW59487.1|1.7e-1355.56hypothetical protein EUGRSUZ_H02229 [Eucalyptus grandis][more]
gi|731397109|ref|XP_010652763.1|3.8e-1354.93PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera][more]
gi|694313665|ref|XP_009367699.1|4.1e-1266.15PREDICTED: hyphally-regulated protein-like [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.102730.1Cucsa.102730.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34663FAMILY NOT NAMEDcoord: 2..76
score: 8.2
NoneNo IPR availablePANTHERPTHR34663:SF2SUBFAMILY NOT NAMEDcoord: 2..76
score: 8.2

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.102730Wild cucumber (PI 183967)cgycpiB115
Cucsa.102730Wild cucumber (PI 183967)cgycpiB121
Cucsa.102730Wild cucumber (PI 183967)cgycpiB123
Cucsa.102730Cucumber (Chinese Long) v2cgycuB113
Cucsa.102730Cucumber (Chinese Long) v2cgycuB117
Cucsa.102730Cucumber (Chinese Long) v2cgycuB120
Cucsa.102730Cucumber (Chinese Long) v2cgycuB122
Cucsa.102730Melon (DHL92) v3.5.1cgymeB125
Cucsa.102730Melon (DHL92) v3.5.1cgymeB126
Cucsa.102730Melon (DHL92) v3.5.1cgymeB130
Cucsa.102730Watermelon (Charleston Gray)cgywcgB137
Cucsa.102730Watermelon (Charleston Gray)cgywcgB138
Cucsa.102730Watermelon (97103) v1cgywmB132
Cucsa.102730Watermelon (97103) v1cgywmB135
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0211
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0213
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0215
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0217
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0218
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0223
Cucsa.102730Cucurbita pepo (Zucchini)cgycpeB0227
Cucsa.102730Bottle gourd (USVL1VR-Ls)cgylsiB129
Cucsa.102730Melon (DHL92) v3.6.1cgymedB124
Cucsa.102730Melon (DHL92) v3.6.1cgymedB125
Cucsa.102730Silver-seed gourdcarcgyB0219
Cucsa.102730Silver-seed gourdcarcgyB0433
Cucsa.102730Silver-seed gourdcarcgyB0467
Cucsa.102730Cucumber (Chinese Long) v3cgycucB117
Cucsa.102730Cucumber (Chinese Long) v3cgycucB123
Cucsa.102730Cucumber (Chinese Long) v3cgycucB127
Cucsa.102730Watermelon (97103) v2cgywmbB127
Cucsa.102730Watermelon (97103) v2cgywmbB133
Cucsa.102730Wax gourdcgywgoB146
Cucsa.102730Cucumber (Gy14) v1cgycgyB021
Cucsa.102730Cucumber (Gy14) v1cgycgyB044
Cucsa.102730Cucumber (Gy14) v1cgycgyB049
Cucsa.102730Cucumber (Gy14) v1cgycgyB052
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0228
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0226
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0227
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0221
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0231
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0232
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0234
Cucsa.102730Cucurbita maxima (Rimu)cgycmaB0235
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0215
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0219
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0222
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0224
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0227
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0228
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0231
Cucsa.102730Cucurbita moschata (Rifu)cgycmoB0233