ClCG01G017110 (gene) Watermelon (Charleston Gray)

NameClCG01G017110
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr01 : 31652333 .. 31652623 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGCATGGGGAAGATTTTAATCACTTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGA

mRNA sequence

ATGAGGAGCATGGGGAAGATTTTAATCACTTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGA

Coding sequence (CDS)

ATGAGGAGCATGGGGAAGATTTTAATCACTTTCATTCTGGTGGTTGCGCTGTTGGGCAATGGCGGCCTAGAAGGCAGGCCACTCAGCCTCATGGCCTCAGGCTCGGGCTCTGCGGCCGCCATCGCTAAAGATTTCTTCGAGGGGCTTTCTCTGGGAGCCATTAAGCAGTCGGGTCCAAGCGCCGGTGGCGATGGTCACAAATTCGTCAACTATGACACGTTTGGAGGTATTAAGGATTCTGGCCCCACTCCTGGTGCTGGACATAGCCACGTCACCTCCTCCCACCCCTGA

Protein sequence

MRSMGKILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSHP
BLAST of ClCG01G017110 vs. TrEMBL
Match: A0A0A0KIE2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-34
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 1

Query: 1  MRSMGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQ 60
          MRS+  I I FILV ALLGNGGL    + RPL+LM  GSGSAA IA+DFFEGLSLGAIKQ
Sbjct: 1  MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61 SGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          SGPSAGGDGHKFVNYDT GGIKDSGP PG GH H+TSSH
Sbjct: 61 SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 99

BLAST of ClCG01G017110 vs. TrEMBL
Match: D7TTE3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1

Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGHSHV 92
           N  T GGIKDSGP+PG GH +V
Sbjct: 68 TNAGTLGGIKDSGPSPGEGHKYV 89

BLAST of ClCG01G017110 vs. TrEMBL
Match: V7CCF8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-14
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1

Query: 6  KILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDG 65
          +  +  +L+V   G  GLE RPLS+  +G G       DFF+ LSLGAIK+SGPS GG G
Sbjct: 8  RAFVVLVLLVMSTGLMGLEARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKG 67

Query: 66 HKFVNYDTFGGIKDSGPTPGA-GHSHVTS 94
          H+F N +T GGIKDSGP+ G  GH    S
Sbjct: 68 HRFTNSNTLGGIKDSGPSSGGEGHKFTNS 93

BLAST of ClCG01G017110 vs. TrEMBL
Match: V7CCF8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-13
Identity = 46/106 (43.40%), Postives = 57/106 (53.77%), Query Frame = 1

Query: 6   KILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAI----------- 65
           +  +  +L+V   G  GLE RPLS+  +G G       DFF+ LSLGAI           
Sbjct: 8   RAFVVLVLLVMSTGLMGLEARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKG 67

Query: 66  ------------KQSGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGH 89
                       K SGPS+GG+GHKF N +T GGIK+SGPTPG GH
Sbjct: 68  HRFTNSNTLGGIKDSGPSSGGEGHKFTNSETLGGIKESGPTPGQGH 110


HSP 2 Score: 85.9 bits (211), Expect = 2.9e-14
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1

Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGH 89
           N  T GGIKDSGP+PG GH
Sbjct: 68 TNAGTLGGIKDSGPSPGNGH 86

BLAST of ClCG01G017110 vs. TrEMBL
Match: A5AV37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011346 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.5e-13
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1

Query: 9   ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAG------ 68
           ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS G      
Sbjct: 8   VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSPGNGHKFT 67

Query: 69  ---------------GDGHKFVNYDTFGGIKDSGPTPGAGHSHV 92
                          G+GHKF N  T GGIKDSGP PG GH  +
Sbjct: 68  NAGTLGGIKDSGPSPGNGHKFTNAGTLGGIKDSGPNPGEGHKEL 111


HSP 2 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 47/96 (48.96%), Postives = 62/96 (64.58%), Query Frame = 1

Query: 1  MRSMGKIL-ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGP 60
          MRS  ++L I  +L +        E RP ++M + +    A    FF+GLSLGAIKQ+GP
Sbjct: 1  MRSATRVLHILLVLAMLCAVFVANEARPFNVMETKAPVGVACG-GFFDGLSLGAIKQAGP 60

Query: 61 SAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          S G +GHKF N +T GGIKDSGP+PG GH HVT ++
Sbjct: 61 SPG-EGHKFTNSETLGGIKDSGPSPGEGHGHVTGTN 94

BLAST of ClCG01G017110 vs. TAIR10
Match: AT2G23270.1 (AT2G23270.1 unknown protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1

Query: 4  MGKILI-TFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAG 63
          M K+++ +F+  + +  N  +E RPL L  +     A     FF+GLSLGAIK+SGPS+G
Sbjct: 3  MNKVVLGSFLFFMLVSSNFVVEARPLGLTKAEENLVAK----FFDGLSLGAIKESGPSSG 62

Query: 64 GDGHKFVN-YDTFGGIKDSGP-TPGAGH 89
          G+GH+FV+  +T    K SGP T G GH
Sbjct: 63 GEGHRFVDRTETLEYGKHSGPSTSGPGH 86

BLAST of ClCG01G017110 vs. TAIR10
Match: AT4G37290.1 (AT4G37290.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-10
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1

Query: 4  MGKILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGG 63
          M K +++ IL   L+G+  +E RPL L  +     A++    F+GLSLG+IK SGPS  G
Sbjct: 3  MNKNVLSSILFFMLIGSVLVESRPLGLTKTEEKFVASL----FDGLSLGSIKDSGPSP-G 62

Query: 64 DGHKFVN-YDTFGGIKDSGPTP-GAGH 89
          +GHK V+  DTF  +K SGP+P G GH
Sbjct: 63 EGHKVVDRKDTFRFVKHSGPSPSGPGH 84

BLAST of ClCG01G017110 vs. NCBI nr
Match: gi|659079571|ref|XP_008440327.1| (PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 83/99 (83.84%), Postives = 85/99 (85.86%), Query Frame = 1

Query: 1  MRSMGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQ 60
          MRSM KI I  ILVVALL NGGL    E RPL LM  GSGSAAAIA+DFFEGLSLGAIKQ
Sbjct: 1  MRSMSKIFIGLILVVALLDNGGLVIVTEARPLGLM--GSGSAAAIAEDFFEGLSLGAIKQ 60

Query: 61 SGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          SGPSAGGDGHKFVNYDTFGG+KDSGPTPG GHSHVTSSH
Sbjct: 61 SGPSAGGDGHKFVNYDTFGGMKDSGPTPGDGHSHVTSSH 97

BLAST of ClCG01G017110 vs. NCBI nr
Match: gi|700193355|gb|KGN48559.1| (hypothetical protein Csa_6G491710 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 1

Query: 1  MRSMGKILITFILVVALLGNGGL----EGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQ 60
          MRS+  I I FILV ALLGNGGL    + RPL+LM  GSGSAA IA+DFFEGLSLGAIKQ
Sbjct: 1  MRSITNIFIGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQ 60

Query: 61 SGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGHSHVTSSH 96
          SGPSAGGDGHKFVNYDT GGIKDSGP PG GH H+TSSH
Sbjct: 61 SGPSAGGDGHKFVNYDTLGGIKDSGPAPGDGHRHITSSH 99

BLAST of ClCG01G017110 vs. NCBI nr
Match: gi|731397109|ref|XP_010652763.1| (PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1

Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGHSHV 92
           N  T GGIKDSGP+PG GH +V
Sbjct: 68 TNAGTLGGIKDSGPSPGEGHKYV 89

BLAST of ClCG01G017110 vs. NCBI nr
Match: gi|593785685|ref|XP_007155883.1| (hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris])

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-14
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1

Query: 6  KILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDG 65
          +  +  +L+V   G  GLE RPLS+  +G G       DFF+ LSLGAIK+SGPS GG G
Sbjct: 8  RAFVVLVLLVMSTGLMGLEARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKG 67

Query: 66 HKFVNYDTFGGIKDSGPTPGA-GHSHVTS 94
          H+F N +T GGIKDSGP+ G  GH    S
Sbjct: 68 HRFTNSNTLGGIKDSGPSSGGEGHKFTNS 93

BLAST of ClCG01G017110 vs. NCBI nr
Match: gi|593785685|ref|XP_007155883.1| (hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris])

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-13
Identity = 46/106 (43.40%), Postives = 57/106 (53.77%), Query Frame = 1

Query: 6   KILITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAI----------- 65
           +  +  +L+V   G  GLE RPLS+  +G G       DFF+ LSLGAI           
Sbjct: 8   RAFVVLVLLVMSTGLMGLEARPLSISGTGEGVEVV---DFFDWLSLGAIKESGPSPGGKG 67

Query: 66  ------------KQSGPSAGGDGHKFVNYDTFGGIKDSGPTPGAGH 89
                       K SGPS+GG+GHKF N +T GGIK+SGPTPG GH
Sbjct: 68  HRFTNSNTLGGIKDSGPSSGGEGHKFTNSETLGGIKESGPTPGQGH 110


HSP 2 Score: 85.9 bits (211), Expect = 4.2e-14
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1

Query: 9  ITFILVVALLGNGGLEGRPLSLMASGSGSAAAIAKDFFEGLSLGAIKQSGPSAGGDGHKF 68
          ++F+ +V +L +  + GRP +++    G      + FF+GLSLGAIKQSGPS  G+GHKF
Sbjct: 8  VSFLFLVLVLNSIAIHGRPFNVLKKPRGPDGEEMRGFFDGLSLGAIKQSGPSP-GNGHKF 67

Query: 69 VNYDTFGGIKDSGPTPGAGH 89
           N  T GGIKDSGP+PG GH
Sbjct: 68 TNAGTLGGIKDSGPSPGNGH 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KIE2_CUCSA2.0e-3477.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G491710 PE=4 SV=1[more]
D7TTE3_VITVI4.5e-1550.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g01010 PE=4 SV=... [more]
V7CCF8_PHAVU1.7e-1450.56Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1[more]
V7CCF8_PHAVU3.3e-1343.40Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G239800g PE=4 SV=1[more]
A5AV37_VITVI9.5e-1340.38Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011346 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G23270.11.0e-1044.32 unknown protein[more]
AT4G37290.12.3e-1045.98 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659079571|ref|XP_008440327.1|1.1e-3583.84PREDICTED: uncharacterized protein LOC103484809 [Cucumis melo][more]
gi|700193355|gb|KGN48559.1|2.8e-3477.78hypothetical protein Csa_6G491710 [Cucumis sativus][more]
gi|731397109|ref|XP_010652763.1|6.5e-1550.60PREDICTED: uncharacterized protein LOC104879917 [Vitis vinifera][more]
gi|593785685|ref|XP_007155883.1|2.5e-1450.56hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris][more]
gi|593785685|ref|XP_007155883.1|4.7e-1343.40hypothetical protein PHAVU_003G239800g [Phaseolus vulgaris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G017110.1ClCG01G017110.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34663FAMILY NOT NAMEDcoord: 2..96
score: 2.9

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G017110Melon (DHL92) v3.6.1medwcgB268
ClCG01G017110Silver-seed gourdcarwcgB0173
ClCG01G017110Silver-seed gourdcarwcgB0397
ClCG01G017110Cucumber (Chinese Long) v3cucwcgB128
ClCG01G017110Cucumber (Chinese Long) v3cucwcgB214
ClCG01G017110Cucumber (Chinese Long) v3cucwcgB563
ClCG01G017110Watermelon (97103) v2wcgwmbB089
ClCG01G017110Watermelon (97103) v2wcgwmbB121
ClCG01G017110Wax gourdwcgwgoB217
ClCG01G017110Watermelon (Charleston Gray)wcgwcgB095
ClCG01G017110Watermelon (Charleston Gray)wcgwcgB097
ClCG01G017110Watermelon (Charleston Gray)wcgwcgB112
ClCG01G017110Cucumber (Gy14) v1cgywcgB394
ClCG01G017110Cucumber (Gy14) v1cgywcgB670
ClCG01G017110Cucurbita maxima (Rimu)cmawcgB754
ClCG01G017110Cucurbita maxima (Rimu)cmawcgB457
ClCG01G017110Cucurbita maxima (Rimu)cmawcgB478
ClCG01G017110Cucurbita maxima (Rimu)cmawcgB520
ClCG01G017110Cucurbita maxima (Rimu)cmawcgB579
ClCG01G017110Cucurbita maxima (Rimu)cmawcgB693
ClCG01G017110Cucurbita moschata (Rifu)cmowcgB755
ClCG01G017110Cucurbita moschata (Rifu)cmowcgB139
ClCG01G017110Cucurbita moschata (Rifu)cmowcgB477
ClCG01G017110Cucurbita moschata (Rifu)cmowcgB518
ClCG01G017110Cucurbita moschata (Rifu)cmowcgB575
ClCG01G017110Cucurbita moschata (Rifu)cmowcgB699
ClCG01G017110Wild cucumber (PI 183967)cpiwcgB121
ClCG01G017110Cucumber (Chinese Long) v2cuwcgB114
ClCG01G017110Cucumber (Chinese Long) v2cuwcgB211
ClCG01G017110Cucumber (Chinese Long) v2cuwcgB286
ClCG01G017110Cucumber (Chinese Long) v2cuwcgB539
ClCG01G017110Melon (DHL92) v3.5.1mewcgB192
ClCG01G017110Melon (DHL92) v3.5.1mewcgB278
ClCG01G017110Melon (DHL92) v3.5.1mewcgB469
ClCG01G017110Watermelon (97103) v1wcgwmB120
ClCG01G017110Watermelon (97103) v1wcgwmB131
ClCG01G017110Watermelon (97103) v1wcgwmB135
ClCG01G017110Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G017110Cucurbita pepo (Zucchini)cpewcgB103
ClCG01G017110Cucurbita pepo (Zucchini)cpewcgB254
ClCG01G017110Cucurbita pepo (Zucchini)cpewcgB642
ClCG01G017110Cucurbita pepo (Zucchini)cpewcgB730
ClCG01G017110Bottle gourd (USVL1VR-Ls)lsiwcgB425
ClCG01G017110Cucumber (Gy14) v2cgybwcgB111
ClCG01G017110Cucumber (Gy14) v2cgybwcgB399