MELO3C007041.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007041.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Small nuclear ribonucleoprotein-associated protein
Location	chr08 : 413656 .. 417642 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTTGTAAAACCCTAGGTTTTTCCTCCCCCACTCTCCCGCTCGCTTCATTTCTTCTTGCTGGAGTTCTTACTGAAACAAGAAACCCTAGGTCGCATCTCAGTTCAGGTGCTCCACATTCTTGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTATCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCAGGTATTGGTCGTGCCGCCGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTCTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCAGTCCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAAAACCAACAGCAAAATCAACAGCAATAGAGTGGGTACGCGTCTTCATCTTTGAAAGTTTTTAGCATTACCCCTCCGGCGATCAATTCTTTTTTTTTAGGCTATCACTAATAAACTTGCGCATCACTGATTAGTATACCGATCTGCTTTGTCACGGGATTAAAAATTTATGAGCATTATATTTAGAATGGATCGCATTTTTGGGTATGTTTCCAACTTTCCTCGTATCCCAATTTAGCTTTAGTGTCCGGTTGGTTGAGTTAGGGACTGCCTTTGAAGGTTGTGACTCTATGGAATAAGGGTTTTATTCTAACCAATCTTCGGAGCTAGTTTCTCTGGCAAGGATAAGGTCATCTGGATTGATTTCTTTCGGCTACTTTATGGTTCTTTTGCTCGAGAAAATCTACAGGATCTTCTTACGGAAATATAGGTTTCCTTGTCATAATATATATTCTTTTCTTTCATGTTCGAAGCAACGGTTGAACTTTTTCTCTTGAAAGGAACAAATATCTTATCGTCCATCTTGGCTTGATTATTTCTCTGATATTGGCCTACTCTTGGGAGTCTATCTTGGTAGTTCCATTTGCCCTTGGGAGCCCAACAAGATCTAACATTGATCGATATTGTATTTATTTCAGTTTAAAACACTATTGGTTCCCATACTCTCATTCAAGTAAAAAATTTAATTTCAGAATTTGCAACAATTCAATTTTTAAAATTTAGCTAGCCTGCAATGGTTTAGTTCTAGTGTTTCTAAAATTTGTAATGGTTTTATCCTTCTCATGAGAAATCTTATCAAGGGACAAGTGGAAGGAATGATGAGTCTTTCTTAGTTATGTAACACATTTTGCAAACAAGCTTGGTCCCTAACAGTTTATCAATGTATACGTTAGGGTACTTGCTAACAAGAATCAAGACCTGAAATATATTGAGAATTAAAGGAGAAACTACAAAATAATCCAAGTATAAAAGAACTTGGAACCTCCCTCCTGAGTGTTCTCATCCGAGCCCTAGATCACTCCACAAAATAGTCTAACCTTCACTCACTCATCCTCTTACTATTTATACAACATCATGTAACTAATTTCCAATGGTCACCCCTTAATACTAAGGTACTGATATTCCTATCTAGGCACCTAATAGTATACAAGTGAAATTTTCTATTAGATCTTAACAAGATTTACATTGTAGGGAGTAAGTTGTTACCAATGTTGAGTTACATAGTAAATTGTTATAAGTTTAAGTATAGACTAAATAGTCACATGTTAAAATTTAGAGACCAGAAGTAATTATTTTATTTTTAATTATATAACTTACATAGCCACCTCATTGATCCTTCTTGCCGGGGCACCAATATCCTTTTGGCATTCAAGGCGGCATTGAGTAATAACACCTTGGGTTTTTATAAGATGGATATATGAGTAGTTTGCTCTACGTTGATGGTACCTTATGATGAATGTGTCCAACTGTTAAGTGTTAGCAAGTATGCTATATACAATGACTGCTGGAGGAGTATACTGATTTGTGTATGTGGTTTTGAAAACCAAACTCACTTTAGTCCCCTTGTTGTTTTATTTCACACCCAAACTTTAGTATACACTGGTGGATAAATTTGGAAGTAACAGAAGGGTTCTGATTCCAAATCTTGAAACAAATAGGGGGCAGGTGGTGGAGGAAATTTCCATCTAAAACACAGCTAAAGTTACTGTGTAAGTTAATGCAAAAATATAATATACTCTGCTCAAACATACGAAGTTAAATCTTACAAATTACAATATTTGAAATCTTAAAAGATATTGAAATATTTAGTTGACTATGACCGGAAGAAGATACCATCATAATACTTTAGGATTGATCAACCTATAAGAAAATCTCTATCCCTAAAAATTTTAAATCGAACATTTTTCAGGGTTTGACTAAATATGTTTGTAAGTAAATTGACTTTATGTTTGCTAAGTTGTGATAATAATATATGATTTCTAAATAGAAATTTGGGATGGTATTGTTAATTTGCTTTGTGTTGGAGGGGTATTTTTTTCCAAGAGGATGTTTATTTCCCAACTTTCTAGTTCGTCGATAATAAGGTCTAGAAAAGTAGAGTCGTTATAGTTGGTTTCAATTGAGTCACTGACTCAGAAAATTAGCTATCATTCAAACTTGTGGCCATCTTGTGCAATGTTGTATGGTTTTTTCATAGATGTCACAAATTACTTTGTATTTCTCTCTTGATACTTTGATGGCACTTTCAAGTGTATGTCAAGATTGGTTGTTTATCCACTCTCTATCTCTAATAACTCTGTTGGTAAAATATATGCCTCTTTACAAGATCTGAATGCTTGATTGGTGTAATGAGGTGGTAAAGGCTGTTATGATCTTTAGTTTTAAAACTTTATATATTATAAATTTCTGACCATTCTAGGATTCGAAATTTTGTCCAATATTAAACATTAATGTTATCTTGCAATCTTTAATTTTGCTGTCTCTCATTTTTCAGTAACTTGATAGTTATTTGTTGCAGACATATTGCATGTGACGATGATCCGTGGAGGTCTTCAGTTGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCGAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGGTTTTAATGTGAATTTCCAATTCCTAATCGCCATGTCTCTAGGTAGATACACTTGCCCCTTTCACTTTTTAATCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGTTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGATCTACAAATTTTTTGTGTGCATGAGTTGTGTGTGTGTTCTTTTCATGAAACAAATGTACTGAGGATTAGAGAAATATAAAAGGGTAGGAAGAAGCAAACTTCTTTCCAATTAGCATGAA

mRNA sequence

CAATTTGTAAAACCCTAGGTTTTTCCTCCCCCACTCTCCCGCTCGCTTCATTTCTTCTTGCTGGAGTTCTTACTGAAACAAGAAACCCTAGGTCGCATCTCAGTTCAGGTGCTCCACATTCTTGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTATCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCAGGTATTGGTCGTGCCGCCGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTCTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCAGTCCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAAAACCAACAGCAAAATCAACAGCAATAGAGTGGACATATTGCATGTGACGATGATCCGTGGAGGTCTTCAGTTGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATCTCCCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCGAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGATATACTTCAAATGCAAGGTTTTAATGTGAATTTCCAATTCCTAATCGCCATGTCTCTAGGTAGATACACTTGCCCCTTTCACTTTTTAATCTGTGTTAGGCATTATATAGGATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGTTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGATCTACAAATTTTTTGTGTGCATGAGTTGTGTGTGTGTTCTTTTCATGAAACAAATGTACTGAGGATTAGAGAAATATAAAAGGGTAGGAAGAAGCAAACTTCTTTCCAATTAGCATGAA

Coding sequence (CDS)

ATTTGTAAAACCCTAGGTTTTTCCTCCCCCACTCTCCCGCTCGCTTCATTTCTTCTTGCTGGAGTTCTTACTGAAACAAGAAACCCTAGGTCGCATCTCAGTTCAGGTGCTCCACATTCTTGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTATCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCAGGTATTGGTCGTGCCGCCGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTCTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCAGTCCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAAAACCAACAGCAAAATCAACAGCAATAG

Protein sequence

ICKTLGFSSPTLPLASFLLAGVLTETRNPRSHLSSGAPHSCTMSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

Homology

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BLAST of MELO3C007041.2 vs. NCBI nr
Match: XP_004134546.1 (PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_6G526300 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 3.0e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of MELO3C007041.2 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 3.0e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

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BLAST of MELO3C007041.2 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 3.0e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

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BLAST of MELO3C007041.2 vs. NCBI nr
Match: XP_022977653.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima])

HSP 1 Score: 293.5 bits (750), Expect = 8.8e-76
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           +ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  DERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPI 152

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BLAST of MELO3C007041.2 vs. NCBI nr
Match: XP_022926621.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata])

HSP 1 Score: 293.1 bits (749), Expect = 1.2e-75
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 194
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

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BLAST of MELO3C007041.2 vs. TAIR10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-68
Identity = 132/151 (87.42%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 102
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 103 NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 162
           NEER+ERRTLGLVLLRGEEVISMTVEGP     SRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPXXXXXSRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 163 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRP 193
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRP
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRP 151

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BLAST of MELO3C007041.2 vs. TAIR10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B)

HSP 1 Score: 243.4 bits (620), Expect = 1.9e-64
Identity = 126/149 (84.56%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EER++RRTLGLVLLRGEEVISMTVEGP                AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPXXXXXXXXXXXXXXXXAGPGIGRAAGRGVPTGP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISR 192
           LVQAQPGL+GPVRGVGGPAPGMMQPQISR
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISR 149

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BLAST of MELO3C007041.2 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.9 bits (102), Expect = 2.2e-04
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 55  INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNE-ERDERRTLGL 114
           I  R+ V ++  R+L GK  AFD+H+N++LGD EE         +   E  R  +RT+  
Sbjct: 20  IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79

Query: 115 VLLRGEEVI 123
           + +RG+ VI
Sbjct: 80  LFVRGDGVI 88

[Close]

BLAST of MELO3C007041.2 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.9 bits (102), Expect = 2.2e-04
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 55  INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNE-ERDERRTLGL 114
           ++ R+ V ++  R+L GK  AFD+H+N++LGD EE         +   E  R  +RT+  
Sbjct: 20  LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79

Query: 115 VLLRGEEVI 123
           + +RG+ VI
Sbjct: 80  LFVRGDGVI 88

[Close]

BLAST of MELO3C007041.2 vs. Swiss-Prot
Match: sp|Q9PV94|RSMB_CHICK (Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.4e-42
Identity = 90/147 (61.22%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 162
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRG+P  A
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGA 120

Query: 163 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 189
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of MELO3C007041.2 vs. Swiss-Prot
Match: sp|Q9N1Q0|RSMB_MACEU (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.8e-41
Identity = 89/147 (60.54%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 162
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 163 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 189
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of MELO3C007041.2 vs. Swiss-Prot
Match: sp|Q17QN3|RSMN_BOVIN (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-40
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 162
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 163 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 189
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of MELO3C007041.2 vs. Swiss-Prot
Match: sp|P63162|RSMN_HUMAN (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-40
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 162
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 163 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 189
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of MELO3C007041.2 vs. Swiss-Prot
Match: sp|Q60HD3|RSMN_MACFA (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-40
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 162
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 163 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 189
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of MELO3C007041.2 vs. TrEMBL
Match: tr|A0A1S3AZK2|A0A1S3AZK2_CUCME (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of MELO3C007041.2 vs. TrEMBL
Match: tr|A0A0A0KPA9|A0A0A0KPA9_CUCSA (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of MELO3C007041.2 vs. TrEMBL
Match: tr|A0A103YIG1|A0A103YIG1_CYNCS (Small nuclear ribonucleoprotein-associated protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011909 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.5e-71
Identity = 140/152 (92.11%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           L+QAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LIQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of MELO3C007041.2 vs. TrEMBL
Match: tr|A0A2J6KDN7|A0A2J6KDN7_LACSA (Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=LSAT_2X112821 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.8e-70
Identity = 137/152 (90.13%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSK SKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           L+QAQPGLAGPVRG+GGPAPGMMQPQISRPPV
Sbjct: 121 LIQAQPGLAGPVRGIGGPAPGMMQPQISRPPV 152

[Close]

BLAST of MELO3C007041.2 vs. TrEMBL
Match: tr|A0A2J6LBW1|A0A2J6LBW1_LACSA (Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=LSAT_8X20501 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.7e-70
Identity = 136/152 (89.47%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 43  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 102
           MSMSK SKMLQ+INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKGSKMLQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 103 EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 162
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 163 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 195
           L+QAQPGLAGPVRG+GGPAPGMMQPQISRPPV
Sbjct: 121 LIQAQPGLAGPVRGIGGPAPGMMQPQISRPPV 152

The following BLAST results are available for this feature:

BLAST of MELO3C007041.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134546.1	3.0e-76	100.00	PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativu...	[more]
XP_008439504.1	3.0e-76	100.00	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]
XP_022925730.1	3.0e-76	100.00	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ...	[more]
XP_022977653.1	8.8e-76	98.68	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima]	[more]
XP_022926621.1	1.2e-75	99.34	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]	[more]

BLAST of MELO3C007041.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44500.1	2.2e-68	87.42	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.1	1.9e-64	84.56	small nuclear ribonucleoprotein associated protein B	[more]
AT1G21190.1	2.2e-04	36.23	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	2.2e-04	34.78	Small nuclear ribonucleoprotein family protein	[more]

BLAST of MELO3C007041.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9PV94\|RSMB_CHICK	7.4e-42	61.22	Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 G...	[more]
sp\|Q9N1Q0\|RSMB_MACEU	2.8e-41	60.54	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
sp\|Q17QN3\|RSMN_BOVIN	1.8e-40	59.86	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
sp\|P63162\|RSMN_HUMAN	1.8e-40	59.86	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]
sp\|Q60HD3\|RSMN_MACFA	1.8e-40	59.86	Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9...	[more]

BLAST of MELO3C007041.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZK2\|A0A1S3AZK2_CUCME	2.0e-76	100.00	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KPA9\|A0A0A0KPA9_CUCSA	2.0e-76	100.00	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]
tr\|A0A103YIG1\|A0A103YIG1_CYNCS	2.5e-71	92.11	Small nuclear ribonucleoprotein-associated protein OS=Cynara cardunculus var. sc...	[more]
tr\|A0A2J6KDN7\|A0A2J6KDN7_LACSA	2.8e-70	90.13	Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=...	[more]
tr\|A0A2J6LBW1\|A0A2J6LBW1_LACSA	3.7e-70	89.47	Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007041.2.1	MELO3C007041.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 49..126 e-value: 4.5E-22 score: 89.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 51..125 e-value: 9.4E-19 score: 66.8
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 43..135 e-value: 4.5E-36 score: 124.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..319
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 43..251
None	No IPR available	PANTHER	PTHR10701:SF0	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'	coord: 43..251
None	No IPR available	CDD	cd01717	Sm_B	coord: 47..127 e-value: 8.31179E-52 score: 166.958
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 49..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007041.2	Csa6G526300	Cucumber (Chinese Long) v2	cumedB486
MELO3C007041.2	CSPI06G37170	Wild cucumber (PI 183967)	cpimedB496
MELO3C007041.2	Cucsa.048580	Cucumber (Gy14) v1	cgymedB025
MELO3C007041.2	CmaCh03G014700	Cucurbita maxima (Rimu)	cmamedB704
MELO3C007041.2	CmaCh07G000380	Cucurbita maxima (Rimu)	cmamedB897
MELO3C007041.2	CmoCh07G000410	Cucurbita moschata (Rifu)	cmomedB886
MELO3C007041.2	CmoCh03G014720	Cucurbita moschata (Rifu)	cmomedB695
MELO3C007041.2	LsiUNG001760	Bottle gourd (USVL1VR-Ls)	lsimedB005
MELO3C007041.2	Cp4.1LG19g05580	Cucurbita pepo (Zucchini)	cpemedB540
MELO3C007041.2	Cp4.1LG10g06550	Cucurbita pepo (Zucchini)	cpemedB081
MELO3C007041.2	CsGy6G036560	Cucumber (Gy14) v2	cgybmedB442
MELO3C007041.2	Cla009859	Watermelon (97103) v1	medwmB561
MELO3C007041.2	ClCG01G025430	Watermelon (Charleston Gray)	medwcgB510
MELO3C007041.2	Cla97C01G025570	Watermelon (97103) v2	medwmbB507
MELO3C007041.2	Bhi03G000180	Wax gourd	medwgoB657
MELO3C007041.2	Carg14950	Silver-seed gourd	carmedB0736
MELO3C007041.2	Carg19338	Silver-seed gourd	carmedB0312
MELO3C007041.2	CsaV3_6G052680	Cucumber (Chinese Long) v3	cucmedB508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007041.2	Bottle gourd (USVL1VR-Ls)	lsimedB156