CsGy6G036560 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G036560
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Small nuclear ribonucleoprotein-associated protein
Location	Chr6 : 31982787 .. 31983641 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG

mRNA sequence

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG

Coding sequence (CDS)

ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTTCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAGCGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCACGTGCGAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGTCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCAGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTGTCCGCTCCGCCAATGACATATCCGGCTGCACCCATTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTCCAATCGGGAGAGGAATGCCTCCTCCGGTGCCTCCACCACAATTCTCTGGAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGACAGGTGATGAGGGGACCGCCACCACCGCCCAGGCCTGGAATGCCAGCTCCCCCTCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAGAACCAACAGCAAAATCAACAGCAATAG

Protein sequence

MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

Homology

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_004134546.1 (PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_6G526300 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 3.4e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 294.7 bits (753), Expect = 3.4e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 3.4e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_022977653.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima])

HSP 1 Score: 293.1 bits (749), Expect = 1.0e-75
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           +ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  DERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPI 152

[Close]

BLAST of CsGy6G036560 vs. NCBI nr
Match: XP_022926621.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata])

HSP 1 Score: 292.4 bits (747), Expect = 1.7e-75
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

[Close]

BLAST of CsGy6G036560 vs. TAIR10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 255.8 bits (652), Expect = 3.2e-68
Identity = 132/151 (87.42%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGP     SRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPXXXXXSRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRP 151
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRP
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRP 151

[Close]

BLAST of CsGy6G036560 vs. TAIR10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B)

HSP 1 Score: 243.0 bits (619), Expect = 2.2e-64
Identity = 126/149 (84.56%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGP                AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPXXXXXXXXXXXXXXXXAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISR 150
           LVQAQPGL+GPVRGVGGPAPGMMQPQISR
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISR 149

[Close]

BLAST of CsGy6G036560 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.9e-04
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNE-ERDERRTLGL 72
          I  R+ V ++  R+L GK  AFD+H+N++LGD EE         +   E  R  +RT+  
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79

Query: 73 VLLRGEEVI 81
          + +RG+ VI
Sbjct: 80 LFVRGDGVI 88

[Close]

BLAST of CsGy6G036560 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.9e-04
Identity = 24/69 (34.78%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNE-ERDERRTLGL 72
          ++ R+ V ++  R+L GK  AFD+H+N++LGD EE         +   E  R  +RT+  
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79

Query: 73 VLLRGEEVI 81
          + +RG+ VI
Sbjct: 80 LFVRGDGVI 88

[Close]

BLAST of CsGy6G036560 vs. TAIR10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 41.6 bits (96), Expect = 9.5e-04
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 14  NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKTNEERDERRTLGL 73
           N ++ +  ++ R+L+G+  AFDRH N+VL +  E     P   KGKK     +  R +  
Sbjct: 34  NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 93

Query: 74  VLLRGEEVI 81
           + LRG+ VI
Sbjct: 94  MFLRGDSVI 102

[Close]

BLAST of CsGy6G036560 vs. Swiss-Prot
Match: sp|Q9PV94|RSMB_CHICK (Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.4e-42
Identity = 90/147 (61.22%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRG+P  A
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGA 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of CsGy6G036560 vs. Swiss-Prot
Match: sp|Q9N1Q0|RSMB_MACEU (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.2e-41
Identity = 89/147 (60.54%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of CsGy6G036560 vs. Swiss-Prot
Match: sp|Q17QN3|RSMN_BOVIN (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-40
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of CsGy6G036560 vs. Swiss-Prot
Match: sp|P63162|RSMN_HUMAN (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-40
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of CsGy6G036560 vs. Swiss-Prot
Match: sp|Q60HD3|RSMN_MACFA (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-40
Identity = 88/147 (59.86%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of CsGy6G036560 vs. TrEMBL
Match: tr|A0A1S3AZK2|A0A1S3AZK2_CUCME (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. TrEMBL
Match: tr|A0A0A0KPA9|A0A0A0KPA9_CUCSA (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. TrEMBL
Match: tr|A0A103YIG1|A0A103YIG1_CYNCS (Small nuclear ribonucleoprotein-associated protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011909 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.9e-71
Identity = 140/152 (92.11%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           L+QAQPGLAGPVRGVGGPAPGMMQPQISRPPV
Sbjct: 121 LIQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. TrEMBL
Match: tr|A0A2J6KDN7|A0A2J6KDN7_LACSA (Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=LSAT_2X112821 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 137/152 (90.13%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSK SKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           L+QAQPGLAGPVRG+GGPAPGMMQPQISRPPV
Sbjct: 121 LIQAQPGLAGPVRGIGGPAPGMMQPQISRPPV 152

[Close]

BLAST of CsGy6G036560 vs. TrEMBL
Match: tr|A0A2J6LBW1|A0A2J6LBW1_LACSA (Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=LSAT_8X20501 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 136/152 (89.47%), Postives = 147/152 (96.71%), Query Frame = 0


Query: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSK SKMLQ+INYRMR+TIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKGSKMLQFINYRMRITIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPV 153
           L+QAQPGLAGPVRG+GGPAPGMMQPQISRPPV
Sbjct: 121 LIQAQPGLAGPVRGIGGPAPGMMQPQISRPPV 152

The following BLAST results are available for this feature:

BLAST of CsGy6G036560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134546.1	3.4e-76	100.00	PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativu...	[more]
XP_008439504.1	3.4e-76	100.00	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]
XP_022925730.1	3.4e-76	100.00	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ...	[more]
XP_022977653.1	1.0e-75	98.68	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima]	[more]
XP_022926621.1	1.7e-75	99.34	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]	[more]

BLAST of CsGy6G036560 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44500.1	3.2e-68	87.42	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.1	2.2e-64	84.56	small nuclear ribonucleoprotein associated protein B	[more]
AT1G21190.1	1.9e-04	36.23	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	1.9e-04	34.78	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	9.5e-04	34.78	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CsGy6G036560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9PV94\|RSMB_CHICK	8.4e-42	61.22	Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 G...	[more]
sp\|Q9N1Q0\|RSMB_MACEU	3.2e-41	60.54	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
sp\|Q17QN3\|RSMN_BOVIN	2.1e-40	59.86	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
sp\|P63162\|RSMN_HUMAN	2.1e-40	59.86	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]
sp\|Q60HD3\|RSMN_MACFA	2.1e-40	59.86	Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9...	[more]

BLAST of CsGy6G036560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZK2\|A0A1S3AZK2_CUCME	2.3e-76	100.00	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KPA9\|A0A0A0KPA9_CUCSA	2.3e-76	100.00	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]
tr\|A0A103YIG1\|A0A103YIG1_CYNCS	2.9e-71	92.11	Small nuclear ribonucleoprotein-associated protein OS=Cynara cardunculus var. sc...	[more]
tr\|A0A2J6KDN7\|A0A2J6KDN7_LACSA	3.2e-70	90.13	Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=...	[more]
tr\|A0A2J6LBW1\|A0A2J6LBW1_LACSA	4.2e-70	89.47	Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR017131	snRNP-assoc_SmB/SmN
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G036560.1	CsGy6G036560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 7..84 e-value: 4.5E-22 score: 89.3
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..83 e-value: 7.3E-19 score: 67.1
IPR017131	Small ribonucleoprotein associated, SmB/SmN	PIRSF	PIRSF037187	SmB_SmN	coord: 1..251 e-value: 9.2E-82 score: 272.1 coord: 237..275 e-value: 4000.0 score: -13.3
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..93 e-value: 3.4E-36 score: 124.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..284
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 1..209
None	No IPR available	PANTHER	PTHR10701:SF0	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'	coord: 1..209
None	No IPR available	CDD	cd01717	Sm_B	coord: 5..85 e-value: 2.60944E-52 score: 166.958
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 7..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G036560	Cla009859	Watermelon (97103) v1	cgybwmB468
CsGy6G036560	Csa6G526300	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G036560	MELO3C007041	Melon (DHL92) v3.5.1	cgybmeB445
CsGy6G036560	ClCG01G025430	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G036560	CSPI06G37170	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G036560	CmaCh03G014700	Cucurbita maxima (Rimu)	cgybcmaB830
CsGy6G036560	CmaCh07G000380	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G036560	CmoCh03G014720	Cucurbita moschata (Rifu)	cgybcmoB809
CsGy6G036560	CmoCh07G000410	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G036560	LsiUNG001760	Bottle gourd (USVL1VR-Ls)	cgyblsiB359
CsGy6G036560	Cp4.1LG19g05580	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G036560	Cp4.1LG10g06550	Cucurbita pepo (Zucchini)	cgybcpeB713
CsGy6G036560	MELO3C007041.2	Melon (DHL92) v3.6.1	cgybmedB442
CsGy6G036560	CsaV3_6G052680	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G036560	Cla97C01G025570	Watermelon (97103) v2	cgybwmbB394
CsGy6G036560	Bhi03G000180	Wax gourd	cgybwgoB590
CsGy6G036560	Carg19338	Silver-seed gourd	carcgybB0312
CsGy6G036560	Carg14950	Silver-seed gourd	carcgybB0726

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G036560	Bottle gourd (USVL1VR-Ls)	cgyblsiB398