CmoCh07G000410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G000410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Small nuclear ribonucleoprotein-associated protein
Location	Cmo_Chr07 : 280682 .. 281524 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCATATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTCTACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGTGCAGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCAGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTCCGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCTCCACCAACGGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

mRNA sequence

ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCATATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTCTACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGTGCAGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCAGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTCCGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCTCCACCAACGGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

Coding sequence (CDS)

ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCATATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTCTACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGTGCAGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCAGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCTCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTCCGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCTCCACCAACGGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

Homology

[Close]

BLAST of CmoCh07G000410 vs. Swiss-Prot
Match: RSMB_HUMAN (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 137/264 (51.89%), Postives = 161/264 (60.98%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMA 240
             PPP+GRG PPP      PG  PP    GP      PMG PP      G PP   PGM 
Sbjct: 181 GPPPPMGRGAPPPGMMGPPPGMRPPM---GP------PMGIPPGRGTPMGMPP---PGMR 240

Query: 241 PPPPRPGMPPPPGGAVPVYGPPRP 264
           PPPP    PPPPG       PPRP
Sbjct: 241 PPPPGMRGPPPPG-----MRPPRP 240

[Close]

BLAST of CmoCh07G000410 vs. Swiss-Prot
Match: RSMB_ERIEU (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-46
Identity = 137/264 (51.89%), Postives = 161/264 (60.98%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMA 240
             PPP+GRG PPP      PG  PP    GP      PMG PP      G PP   PGM 
Sbjct: 181 GPPPPMGRGAPPPGMMGPPPGMRPPM---GP------PMGIPPGRGTPMGMPP---PGMR 240

Query: 241 PPPPRPGMPPPPGGAVPVYGPPRP 264
           PPPP    PPPPG       PPRP
Sbjct: 241 PPPPGMRGPPPPG-----LRPPRP 240

[Close]

BLAST of CmoCh07G000410 vs. Swiss-Prot
Match: RSMB_MOUSE (Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.9e-46
Identity = 128/244 (52.46%), Postives = 152/244 (62.30%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----G 180

Query: 181 QGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMA 240
             PPP+GRG PPP      PG  PP    GP      PMG PP      G PP   PGM 
Sbjct: 181 GPPPPMGRGAPPPGMMGPPPGMRPPM---GP------PMGLPPGRGTPMGMPP---PGMR 225

Query: 241 PPPP 244
           PPPP
Sbjct: 241 PPPP 225

[Close]

BLAST of CmoCh07G000410 vs. Swiss-Prot
Match: RSMB_MACEU (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.2e-46
Identity = 135/264 (51.14%), Postives = 161/264 (60.98%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----G 180

Query: 181 QGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMA 240
             PPP+GRG PPP   A  PG  PP    GP      P G PP      G PP   PGM 
Sbjct: 181 GPPPPMGRGRPPPGMMAPPPGMRPPM---GP------PTGMPPGRGAPMGIPP---PGMR 240

Query: 241 PPPPRPGMPPPPGGAVPVYGPPRP 264
           PPPP    PPPPG       PPRP
Sbjct: 241 PPPPGMRGPPPPG-----MRPPRP 240

[Close]

BLAST of CmoCh07G000410 vs. Swiss-Prot
Match: RSMB_BOVIN (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus GN=SNRPB PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.5e-46
Identity = 136/264 (51.52%), Postives = 160/264 (60.61%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPG 180
           P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+      
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR-----A 180

Query: 181 QGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMA 240
             PPP+GRG PPP      PG  PP    GP      PMG PP      G PP   PGM 
Sbjct: 181 GPPPPMGRGAPPPGMMGPPPGMRPPM---GP------PMGIPPGRGTPMGMPP---PGMR 240

Query: 241 PPPPRPGMPPPPGGAVPVYGPPRP 264
           PPPP    PPPPG       PPRP
Sbjct: 241 PPPPGMRGPPPPG-----MRPPRP 240

[Close]

BLAST of CmoCh07G000410 vs. TrEMBL
Match: A0A0A0KPA9_CUCSA (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 5.9e-140
Identity = 272/284 (95.77%), Postives = 276/284 (97.18%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGM----PPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
            PPP+GRGM    PPPQFS ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           GM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CmoCh07G000410 vs. TrEMBL
Match: M5WMX9_PRUPE (Small nuclear ribonucleoprotein-associated protein OS=Prunus persica GN=PRUPE_ppa009615mg PE=3 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 2.0e-119
Identity = 247/287 (86.06%), Postives = 260/287 (90.59%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKK+N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPLKGKKSN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERD+RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EERDDRRTLGLVLLRGEEVISMTVEGPPPQEESRAKAASAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           L QAQPGL+GPVRGVGGPAPGMMQPQISRPPVP LSAPPMSYPAAPVIRPPGQMP +PGQ
Sbjct: 121 LAQAQPGLSGPVRGVGGPAPGMMQPQISRPPVPNLSAPPMSYPAAPVIRPPGQMPGYPGQ 180

Query: 181 GPPPVGR----GMPPPQFSAARPGGAPPQPFPGPP--QFAQRPMGPPPTGQVMRGPPPPP 240
           GPP + R    G+PPPQF   RPGG PP  F GPP  QF QRPMGPPP GQ+MRGPPPPP
Sbjct: 181 GPPQMARGPPPGVPPPQF--PRPGG-PPLQFQGPPQMQFGQRPMGPPPPGQMMRGPPPPP 240

Query: 241 RPGM-APPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           RPGM  PPP RPGMPPPPGG VPV+GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 RPGMPGPPPHRPGMPPPPGGQVPVFGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CmoCh07G000410 vs. TrEMBL
Match: W9RB21_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019349 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.7e-118
Identity = 244/291 (83.85%), Postives = 260/291 (89.35%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG--KK 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG  K 
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGSTKS 60

Query: 61  TNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT 120
           +NE+R++RRTLGLVLLRGEEV+SMTVEGPPP EESRAKA +AAA++GPGIGRAAGRGIPT
Sbjct: 61  SNEDREDRRTLGLVLLRGEEVVSMTVEGPPPQEESRAKAASAAALSGPGIGRAAGRGIPT 120

Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFP 180
           APL QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPP+SYP APVIRPPGQMP FP
Sbjct: 121 APLAQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPISYPPAPVIRPPGQMPGFP 180

Query: 181 GQGPPPVGRG------MPPPQFSA--ARPGGAPPQPFPGPP-QFAQRPMGPPPTGQVMRG 240
           G GPPP+ RG       PPPQF+A  ARPGG PPQPFP PP QF QRPMGPPP GQ+MRG
Sbjct: 181 GGGPPPMARGPPPPVQQPPPQFAAPGARPGGGPPQPFPIPPQQFGQRPMGPPPPGQMMRG 240

Query: 241 PPPPPRPGM-APPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQ 280
           PP PPRPGM APPPPRPGMPPPPG  +P++GPPRPGMPPPPN QNQQ  QQ
Sbjct: 241 PPAPPRPGMPAPPPPRPGMPPPPGSGIPLFGPPRPGMPPPPNAQNQQNQQQ 291

[Close]

BLAST of CmoCh07G000410 vs. TrEMBL
Match: A5BRN5_VITVI (Small nuclear ribonucleoprotein-associated protein OS=Vitis vinifera GN=VIT_13s0073g00580 PE=3 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 3.0e-115
Identity = 244/280 (87.14%), Postives = 253/280 (90.36%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-N 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAKAV AAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           L+QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAPVIRPPGQMP +PGQ
Sbjct: 121 LIQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPGYPGQ 180

Query: 181 GPPPVGRGMPPP---QFSAARPGGAPPQPFP-GPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
            PP + RG PPP   QF AARPGGAP  PF   PPQ+  RPM PPP  Q+MRGPPPPPRP
Sbjct: 181 APPQIARGPPPPVPAQF-AARPGGAPQPPFQVPPPQYGGRPMVPPP--QMMRGPPPPPRP 240

Query: 241 GM-APPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQ 276
           GM APPPPRPGMPPPPG  VPV+GPPRPGMPPPPNP  QQ
Sbjct: 241 GMQAPPPPRPGMPPPPGSGVPVFGPPRPGMPPPPNPPQQQ 276

[Close]

BLAST of CmoCh07G000410 vs. TrEMBL
Match: B9NAA2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s43060g PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 2.6e-111
Identity = 243/296 (82.09%), Postives = 257/296 (86.82%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKAV+AAA +GPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAASGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPA--------APVIRPPG 180
           L+QAQPGLAGPVRGVGGP+PGMMQPQ  RPPVPQ SAPPM+YPA        APV+RPPG
Sbjct: 121 LIQAQPGLAGPVRGVGGPSPGMMQPQFMRPPVPQHSAPPMTYPASSAPPPGGAPVVRPPG 180

Query: 181 QMP--MFPGQGPPPVGRGMPPP---QFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQ-- 240
           QMP   +PGQG PP+GRG PPP   QFSA      PPQ FP PPQFAQRPMG PP GQ  
Sbjct: 181 QMPPGPYPGQG-PPMGRGPPPPGPLQFSA-----RPPQGFPMPPQFAQRPMGMPPQGQAP 240

Query: 241 VMRGPPPPPRPGM-APPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           +MRGPP PPRPGM APPPPRPGMPPPPGG VPV+GPPRPGMPPPPN Q QQQNQQQ
Sbjct: 241 MMRGPPAPPRPGMPAPPPPRPGMPPPPGGHVPVFGPPRPGMPPPPNAQ-QQQNQQQ 289

[Close]

BLAST of CmoCh07G000410 vs. TAIR10
Match: AT4G20440.1 (AT4G20440.1 small nuclear ribonucleoprotein associated protein B)

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-95
Identity = 216/281 (76.87%), Postives = 229/281 (81.49%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMF 180
           LVQAQPGL+GPVRGVGGPAPGMMQPQISRPP  QLSAPP       +IRPPGQM   P F
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRPP--QLSAPP-------IIRPPGQMLPPPPF 180

Query: 181 PGQGPPPVGRGMPPPQFSAARPGGAPPQPFPGPP--QFAQRPMGPPPTGQVMRGPPPPPR 240
            GQGPP +GRG PPP     RP   PPQ F GPP  Q+ QRPM PPP G +MRGPPPPP 
Sbjct: 181 GGQGPP-MGRGPPPPY--GMRP---PPQQFSGPPPPQYGQRPMIPPPGG-MMRGPPPPPH 240

Query: 241 PGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ 277
               PPPPRPGMPP PGG    + PPRPGMP    P NQQQ
Sbjct: 241 GMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of CmoCh07G000410 vs. TAIR10
Match: AT5G44500.1 (AT5G44500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 318.5 bits (815), Expect = 4.0e-87
Identity = 200/280 (71.43%), Postives = 217/280 (77.50%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPG 180
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP    
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMP---- 180

Query: 181 QGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFA--QRPMGPPPTGQVMRGPPPPPRPG 240
             PP  G+G PPP +     G  PP P P PPQ+   QRPM  PP G +MRGPPPP   G
Sbjct: 181 PQPPFAGQGGPPPPY-----GMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPPPP--HG 240

Query: 241 M-APPPPRPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ 276
           M  PPP RPGMPPP  G  P++ PP PGMPP PPN  NQQ
Sbjct: 241 MQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHNQQ 253

[Close]

BLAST of CmoCh07G000410 vs. NCBI nr
Match: gi|659078017|ref|XP_008439504.1| (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Cucumis melo])

HSP 1 Score: 506.9 bits (1304), Expect = 2.2e-140
Identity = 274/284 (96.48%), Postives = 277/284 (97.54%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAPVIRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGM----PPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
            PPP+GRGM    PPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           GM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CmoCh07G000410 vs. NCBI nr
Match: gi|449433521|ref|XP_004134546.1| (PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus])

HSP 1 Score: 505.0 bits (1299), Expect = 8.5e-140
Identity = 272/284 (95.77%), Postives = 276/284 (97.18%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAP+IRPPGQMPMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGM----PPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
            PPP+GRGM    PPPQFS ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           GM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CmoCh07G000410 vs. NCBI nr
Match: gi|1009108036|ref|XP_015882755.1| (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Ziziphus jujuba])

HSP 1 Score: 451.1 bits (1159), Expect = 1.5e-123
Identity = 252/285 (88.42%), Postives = 264/285 (92.63%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK+N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKSN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKAV+AAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPQEESRAKAVSAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           L QAQPGL+GPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YP APVIRPP QMP FPGQ
Sbjct: 121 LTQAQPGLSGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPPAPVIRPPAQMPGFPGQ 180

Query: 181 GPPPVGRGMP----PPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240
            PPP+ RG P    PPQF AARPGGAPPQ    PPQF QRPMGPPP GQ+MRGPP PPRP
Sbjct: 181 APPPMSRGPPPQVQPPQF-AARPGGAPPQYQVPPPQFGQRPMGPPPPGQMMRGPPAPPRP 240

Query: 241 GM-APPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           GM APPPPRPGMPPPPGGAVP++GPPRPG+PPPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPPRPGMPPPPGGAVPMFGPPRPGLPPPPNPQNQQQNQQQ 284

[Close]

BLAST of CmoCh07G000410 vs. NCBI nr
Match: gi|694370230|ref|XP_009362955.1| (PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Pyrus x bretschneideri])

HSP 1 Score: 444.5 bits (1142), Expect = 1.4e-121
Identity = 247/286 (86.36%), Postives = 261/286 (91.26%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPLKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERD+RRTLGLVLLRGEEV+SMTVEGPPP EESRAKA +AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EERDDRRTLGLVLLRGEEVVSMTVEGPPPQEESRAKAASAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           L QAQPGL+GPVRGVGGPAPGMMQPQISRPPVP LSAPPMSYPAAPVIRPPGQMP FPGQ
Sbjct: 121 LAQAQPGLSGPVRGVGGPAPGMMQPQISRPPVPNLSAPPMSYPAAPVIRPPGQMPGFPGQ 180

Query: 181 GPPPVGR----GMPPPQFSAARPGGAPPQPFPGPP--QFAQRPMGPPPTGQVMRGPPPPP 240
             PP+GR    G+PPPQF A  PGG PPQ FPGPP  QF QRPMGPPP GQ+MRGPPPPP
Sbjct: 181 --PPMGRGPPPGVPPPQF-ARPPGGGPPQQFPGPPQMQFGQRPMGPPPPGQMMRGPPPPP 240

Query: 241 RPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           RPGM  PPPRPGMPPPPGG + ++GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 RPGMQAPPPRPGMPPPPGGGMHMFGPPRPGMPPPPNPQNQQQNQQQ 283

[Close]

BLAST of CmoCh07G000410 vs. NCBI nr
Match: gi|657965485|ref|XP_008374400.1| (PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Malus domestica])

HSP 1 Score: 440.7 bits (1132), Expect = 2.0e-120
Identity = 245/287 (85.37%), Postives = 260/287 (90.59%), Query Frame = 1


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP KGKKTN
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPLKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERD+RRTLGLVLLRGEEV+SMTVEGPPP EESRAKA +AAA+AGPG+GR AGRGIPTAP
Sbjct: 61  EERDDRRTLGLVLLRGEEVVSMTVEGPPPQEESRAKAASAAALAGPGLGRPAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180
           L QAQPGL+GPVRGVGGPAPGMMQPQISRPPVP LSAPPMSYP+APVIRPPGQMP +PGQ
Sbjct: 121 LAQAQPGLSGPVRGVGGPAPGMMQPQISRPPVPNLSAPPMSYPSAPVIRPPGQMPGYPGQ 180

Query: 181 -----GPPPVGRGMPPPQFSAARPGGAPPQPFPGPP--QFAQRPMGPPPTGQVMRGPPPP 240
                GPPP   G+PPPQFS   PGG PPQ FPGPP  QF QRPMGPPP GQ+MRGPPPP
Sbjct: 181 PPMSRGPPP---GVPPPQFSRP-PGGGPPQQFPGPPQMQFGQRPMGPPPPGQMMRGPPPP 240

Query: 241 PRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 281
           PRPGM  PPPRPGMPPPPGGA+ ++GPPRPGMPPPPNPQNQQQNQQQ
Sbjct: 241 PRPGMQAPPPRPGMPPPPGGAMHMFGPPRPGMPPPPNPQNQQQNQQQ 283

The following BLAST results are available for this feature:

BLAST of CmoCh07G000410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RSMB_HUMAN	1.1e-46	51.89	Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=...	[more]
RSMB_ERIEU	1.1e-46	51.89	Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus GN=...	[more]
RSMB_MOUSE	1.9e-46	52.46	Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE...	[more]
RSMB_MACEU	3.2e-46	51.14	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNR...	[more]
RSMB_BOVIN	5.5e-46	51.52	Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus GN=SNRPB PE=...	[more]

BLAST of CmoCh07G000410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA9_CUCSA	5.9e-140	95.77	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus GN=Csa_6G5...	[more]
M5WMX9_PRUPE	2.0e-119	86.06	Small nuclear ribonucleoprotein-associated protein OS=Prunus persica GN=PRUPE_pp...	[more]
W9RB21_9ROSA	1.7e-118	83.85	Uncharacterized protein OS=Morus notabilis GN=L484_019349 PE=4 SV=1	[more]
A5BRN5_VITVI	3.0e-115	87.14	Small nuclear ribonucleoprotein-associated protein OS=Vitis vinifera GN=VIT_13s0...	[more]
B9NAA2_POPTR	2.6e-111	82.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s43060g PE=4 SV=1	[more]

BLAST of CmoCh07G000410 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20440.1	1.8e-95	76.87	small nuclear ribonucleoprotein associated protein B	[more]
AT5G44500.1	4.0e-87	71.43	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CmoCh07G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078017\|ref\|XP_008439504.1\|	2.2e-140	96.48	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Cu...	[more]
gi\|449433521\|ref\|XP_004134546.1\|	8.5e-140	95.77	PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativu...	[more]
gi\|1009108036\|ref\|XP_015882755.1\|	1.5e-123	88.42	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Zi...	[more]
gi\|694370230\|ref\|XP_009362955.1\|	1.4e-121	86.36	PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Pyrus x bretsc...	[more]
gi\|657965485\|ref\|XP_008374400.1\|	2.0e-120	85.37	PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like [Malus dom...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR017131	snRNP-assoc_SmB/SmN

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G000410.1	CmoCh07G000410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..83 score: 1.5
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 7..84 score: 7.0
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 7..146 score: 1.01
IPR017131	Small ribonucleoprotein associated, SmB/SmN	PIR	PIRSF037187	SmB_SmN	coord: 1..245 score: 2.0
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 3..91 score: 1.1
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 2..273 score: 1.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G000410	Cucsa.048580	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G000410	CmaCh03G014700	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G000410	CmaCh07G000380	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G000410	Cla009859	Watermelon (97103) v1	cmowmB816
CmoCh07G000410	Csa6G526300	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G000410	MELO3C007041	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G000410	ClCG01G025430	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G000410	CSPI06G37170	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G000410	LsiUNG001760	Bottle gourd (USVL1VR-Ls)	cmolsiB770
CmoCh07G000410	Cp4.1LG10g06550	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G000410	Cp4.1LG19g05580	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G000410	MELO3C007041.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G000410	CsaV3_6G052680	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G000410	Cla97C01G025570	Watermelon (97103) v2	cmowmbB849
CmoCh07G000410	Bhi03G000180	Wax gourd	cmowgoB1062
CmoCh07G000410	CsGy6G036560	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G000410	Carg14950	Silver-seed gourd	carcmoB0996
CmoCh07G000410	Carg19338	Silver-seed gourd	carcmoB0410

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G000410	CmoCh03G014720	Cucurbita moschata (Rifu)	cmocmoB459

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G000410	Watermelon (97103) v2	cmowmbB857
CmoCh07G000410	Watermelon (Charleston Gray)	cmowcgB760
CmoCh07G000410	Watermelon (97103) v1	cmowmB809
CmoCh07G000410	Bottle gourd (USVL1VR-Ls)	cmolsiB774