Carg14950 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14950
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Small nuclear ribonucleoprotein-associated protein
Location	Cucurbita_argyrosperma_scaffold_071 : 266340 .. 267182 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCATATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTCTACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGTGCCGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCCCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTCCGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCTCCACCAACAGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

mRNA sequence

ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCATATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTCTACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGTGCCGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCCCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTCCGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCTCCACCAACAGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

Coding sequence (CDS)

ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCATATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTCTACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGTGCCGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTACCCCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTCCGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCTCCACCAACAGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

Protein sequence

MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

Homology

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BLAST of Carg14950 vs. NCBI nr
Match: XP_022926621.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata])

HSP 1 Score: 301.6 bits (771), Expect = 2.8e-78
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQRPMXXXXXXXXXXXXXXXXXPGMXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQRPMXXXXXXXXXXXXXXXXXPGMXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQRPMXXXXXXXXXXXXXXXXXPGMXX 240

Query: 241 XXXXXXXXXXXXGAVPVYXXXXXXXXXXXXPQNQQQNQQQ 281
           XXXXXXXXXXXXGAVPVYXXXXXXXXXXXXPQNQQQNQQQ
Sbjct: 241 XXXXXXXXXXXXGAVPVYXXXXXXXXXXXXPQNQQQNQQQ 280

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BLAST of Carg14950 vs. NCBI nr
Match: XP_023517736.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 1.1e-77
Identity = 279/280 (99.64%), Postives = 279/280 (99.64%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQRPMXXXXXXXXXXXXXXXXXPGMXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQRPMXXXXXXXXXXXXXXXXXPGMXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAQRPMXXXXXXXXXXXXXXXXXPGMXX 240

Query: 241 XXXXXXXXXXXXGAVPVYXXXXXXXXXXXXPQNQQQNQQQ 281
           XXXXXXXXXXXXGAVPVYXXXXXXXXXXXXPQNQ QNQQQ
Sbjct: 241 XXXXXXXXXXXXGAVPVYXXXXXXXXXXXXPQNQHQNQQQ 280

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BLAST of Carg14950 vs. NCBI nr
Match: XP_023003040.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima])

HSP 1 Score: 292.7 bits (748), Expect = 1.3e-75
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

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BLAST of Carg14950 vs. NCBI nr
Match: XP_004134546.1 (PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_6G526300 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 1.7e-75
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

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BLAST of Carg14950 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 1.7e-75
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

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BLAST of Carg14950 vs. TAIR10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 255.4 bits (651), Expect = 4.1e-68
Identity = 131/151 (86.75%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGP     SRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPXXXXXSRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRP 151
           PLVQAQPGL+GPVRG+GGPAPGMMQPQISRP
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRP 151

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BLAST of Carg14950 vs. TAIR10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-64
Identity = 125/149 (83.89%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGP                AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPXXXXXXXXXXXXXXXXAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISR 150
           LVQAQPGL+GPVRGVGGPAPGMMQPQISR
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISR 149

[Close]

BLAST of Carg14950 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.5 bits (101), Expect = 2.5e-04
Identity = 24/69 (34.78%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 13 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNE-ERDERRTLGL 72
          +  R+ V ++  R+L GK  AFD+H+N++LGD EE         +   E  R  +RT+  
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79

Query: 73 VLLRGEEVI 81
          + +RG+ VI
Sbjct: 80 LFVRGDGVI 88

[Close]

BLAST of Carg14950 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.5 bits (101), Expect = 2.5e-04
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 16 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNE-ERDERRTLGLVLL 75
          R+ V ++  R+L GK  AFD+H+N++LGD EE         +   E  R  +RT+  + +
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFV 82

Query: 76 RGEEVI 81
          RG+ VI
Sbjct: 83 RGDGVI 88

[Close]

BLAST of Carg14950 vs. TAIR10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 41.6 bits (96), Expect = 9.4e-04
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 14  NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKTNEERDERRTLGL 73
           N ++ +  ++ R+L+G+  AFDRH N+VL +  E     P   KGKK     +  R +  
Sbjct: 34  NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 93

Query: 74  VLLRGEEVI 81
           + LRG+ VI
Sbjct: 94  MFLRGDSVI 102

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BLAST of Carg14950 vs. Swiss-Prot
Match: sp|Q9PV94|RSMB_CHICK (Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-41
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAAGRG+P  A
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGA 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of Carg14950 vs. Swiss-Prot
Match: sp|Q9N1Q0|RSMB_MACEU (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.4e-41
Identity = 88/147 (59.86%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of Carg14950 vs. Swiss-Prot
Match: sp|Q17QN3|RSMN_BOVIN (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of Carg14950 vs. Swiss-Prot
Match: sp|P63162|RSMN_HUMAN (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of Carg14950 vs. Swiss-Prot
Match: sp|Q60HD3|RSMN_MACFA (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 87/147 (59.18%), Postives = 110/147 (74.83%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPG+GRAA RG+P   
Sbjct: 61  PEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAXRGVPAGV 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQ 147
           P+ QA  GLAGPVRGVGGP+  +M PQ
Sbjct: 121 PIPQAPAGLAGPVRGVGGPSQQVMTPQ 145

[Close]

BLAST of Carg14950 vs. TrEMBL
Match: tr|A0A1S3AZK2|A0A1S3AZK2_CUCME (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

[Close]

BLAST of Carg14950 vs. TrEMBL
Match: tr|A0A0A0KPA9|A0A0A0KPA9_CUCSA (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

[Close]

BLAST of Carg14950 vs. TrEMBL
Match: tr|A0A103YIG1|A0A103YIG1_CYNCS (Small nuclear ribonucleoprotein-associated protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011909 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 138/151 (91.39%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           L+QAQPGLAGPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 LIQAQPGLAGPVRGVGGPAPGMMQPQISRPP 151

[Close]

BLAST of Carg14950 vs. TrEMBL
Match: tr|A0A1S2XM02|A0A1S2XM02_CICAR (Small nuclear ribonucleoprotein-associated protein OS=Cicer arietinum OX=3827 GN=LOC101489488 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 139/152 (91.45%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKT 
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTT 60

Query: 61  E-ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           + ER++RRTLGLVLLRGEEVISMTVEGPPP EESR+KAVNAAA+AGPGIGRAAGRGIP A
Sbjct: 61  DGEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVNAAALAGPGIGRAAGRGIPPA 120

Query: 121 PLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           P++QAQPGL+GPVRGVGGPAPGMMQPQISRPP
Sbjct: 121 PVIQAQPGLSGPVRGVGGPAPGMMQPQISRPP 152

[Close]

BLAST of Carg14950 vs. TrEMBL
Match: tr|A0A2J6KDN7|A0A2J6KDN7_LACSA (Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=LSAT_2X112821 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 135/151 (89.40%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSK SKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPPAKG K N
Sbjct: 1   MSMSKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPAKGAKKN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP +E+RAKAV AAA+AGPG+GRAAGRGIPTAP
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPDENRAKAVGAAALAGPGLGRAAGRGIPTAP 120

Query: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 152
           L+QAQPGLAGPVRG+GGPAPGMMQPQISRPP
Sbjct: 121 LIQAQPGLAGPVRGIGGPAPGMMQPQISRPP 151

The following BLAST results are available for this feature:

BLAST of Carg14950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926621.1	2.8e-78	100.00	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]	[more]
XP_023517736.1	1.1e-77	99.64	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp...	[more]
XP_023003040.1	1.3e-75	100.00	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima]	[more]
XP_004134546.1	1.7e-75	99.34	PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Cucumis sativu...	[more]
XP_008439504.1	1.7e-75	99.34	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]

BLAST of Carg14950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G44500.1	4.1e-68	86.75	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.1	3.6e-64	83.89	small nuclear ribonucleoprotein associated protein B	[more]
AT1G21190.1	2.5e-04	34.78	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	2.5e-04	36.36	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.1	9.4e-04	34.78	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Carg14950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9PV94\|RSMB_CHICK	1.1e-41	60.54	Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus OX=9031 G...	[more]
sp\|Q9N1Q0\|RSMB_MACEU	5.4e-41	59.86	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
sp\|Q17QN3\|RSMN_BOVIN	2.7e-40	59.18	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
sp\|P63162\|RSMN_HUMAN	2.7e-40	59.18	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]
sp\|Q60HD3\|RSMN_MACFA	2.7e-40	59.18	Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9...	[more]

BLAST of Carg14950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AZK2\|A0A1S3AZK2_CUCME	1.1e-75	99.34	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KPA9\|A0A0A0KPA9_CUCSA	1.1e-75	99.34	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]
tr\|A0A103YIG1\|A0A103YIG1_CYNCS	1.4e-70	91.39	Small nuclear ribonucleoprotein-associated protein OS=Cynara cardunculus var. sc...	[more]
tr\|A0A1S2XM02\|A0A1S2XM02_CICAR	1.2e-69	91.45	Small nuclear ribonucleoprotein-associated protein OS=Cicer arietinum OX=3827 GN...	[more]
tr\|A0A2J6KDN7\|A0A2J6KDN7_LACSA	1.6e-69	89.40	Small nuclear ribonucleoprotein-associated protein OS=Lactuca sativa OX=4236 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR017131	snRNP-assoc_SmB/SmN
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14950-RA	Carg14950-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 7..84 e-value: 7.0E-22 score: 88.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..83 e-value: 1.5E-18 score: 66.1
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..93 e-value: 7.5E-36 score: 123.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..273
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 1..205
None	No IPR available	PANTHER	PTHR10701:SF0	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'	coord: 1..205
None	No IPR available	CDD	cd01717	Sm_B	coord: 5..85 e-value: 9.09282E-52 score: 165.417
IPR017131	Small ribonucleoprotein associated, SmB/SmN	PIRSF	PIRSF037187	SmB_SmN	coord: 233..271 e-value: 4000.0 score: -12.0 coord: 1..245 e-value: 2.4E-84 score: 280.6
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 7..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14950	Cla009859	Watermelon (97103) v1	carwmB0730
Carg14950	Csa6G526300	Cucumber (Chinese Long) v2	carcuB0748
Carg14950	MELO3C007041	Melon (DHL92) v3.5.1	carmeB0725
Carg14950	ClCG01G025430	Watermelon (Charleston Gray)	carwcgB0707
Carg14950	CSPI06G37170	Wild cucumber (PI 183967)	carcpiB0764
Carg14950	Cucsa.048580	Cucumber (Gy14) v1	carcgyB0822
Carg14950	CmaCh07G000380	Cucurbita maxima (Rimu)	carcmaB1024
Carg14950	CmaCh03G014700	Cucurbita maxima (Rimu)	carcmaB1023
Carg14950	CmoCh07G000410	Cucurbita moschata (Rifu)	carcmoB0996
Carg14950	CmoCh03G014720	Cucurbita moschata (Rifu)	carcmoB0995
Carg14950	LsiUNG001760	Bottle gourd (USVL1VR-Ls)	carlsiB668
Carg14950	Cp4.1LG10g06550	Cucurbita pepo (Zucchini)	carcpeB1028
Carg14950	Cp4.1LG19g05580	Cucurbita pepo (Zucchini)	carcpeB1029
Carg14950	CsGy6G036560	Cucumber (Gy14) v2	carcgybB0726
Carg14950	MELO3C007041.2	Melon (DHL92) v3.6.1	carmedB0736
Carg14950	CsaV3_6G052680	Cucumber (Chinese Long) v3	carcucB0767
Carg14950	Cla97C01G025570	Watermelon (97103) v2	carwmbB0764
Carg14950	Bhi03G000180	Wax gourd	carwgoB0863

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14950	Carg19338	Silver-seed gourd	carcarB328

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14950	Bottle gourd (USVL1VR-Ls)	carlsiB669