MELO3C007029.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007029.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	chr08 : 313209 .. 316295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTAAAACCGTCCGGTGTTATGAAAATAAGAAACCGCGAATTCGAGCTGTGAGGTGCGATCGATCGATCGAACGAGCAAAGCTCCAGGACGTGGACTGAGCAGATTTGGGCTCCAACATGTGGGCGACAACCGTCTCCTTACCTTCAATTTCAAATCTTCGGGGACCCGTTTTTCCGAATAATCCGCTTGTCGCTTCCAATCGCCCATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAGTAAATTCACTTCCCTCTTCCTTTCGTTTCATTTGATTTTCTTGATTTCCCATTTCGAATTTTCCCCCCAATTTGTCGTGTTTGCTGTGATTTCAGTTTTTCTGTTTCTCCTCTTAGGGTTTTCCTGTTTCCTTCCTTTTATTTTTAGCTTTATTGGTTGCTGTCATGGTTTTGCCCTATTGTTGTTTTTTATGCTATTTTTGTGCCTTTGGTTTACTTTTCAAGGCTTTTTTCTGCTGAAAGTTTACGCTGTTGTCTGCCTGATTACTCTAATCAGATTGGTTTAGTTATTTGTTTGTTTATTATTAGCAATGATGAAATTGGTACGGAAGAATAGAAGACACCATGAAAGTTCGCGGTGTTCATTATGAATAACCTAGAAAGTTAGATATTCAATGCCATTGAATTGAAAAATTCCCAAGTTTATTAAGGATTGTTTATGGAGTTGTAAGAAAGAAATTGTCCCTACACGAAAAAGGGTGGGGGGTGATAAATTATCCCCCTCCCCAAGAAAGGGAAAACTGCAAGAAAGTCTTTGAACCTAAATTTAAAAAAAACCTATCGCAAGTGAAATTGTTTATGAAACTGCAAACTACCTAGCAGTGAGAGCTGACCAGGACTTTGACCATGCACCTGTTTAAAAGGAAAATGAACTGTATATAAACTGGTTCAATTATAACACATCCTGGTGACAATGTTAAAAAAAAAAATCTTTTGTTGAATTGATCTAGATTGAAACTTTTCTTATATTTCCGTCTCTGCGTGTAGGTGACTAGAGATACAGTCTTCATTGTCTTGCTAATGGAAGTTTTAATGGCATAGTTTATTGCTTATTTGGCACACAAAACTTTTAGTTAAATAAATTCAGAAGCTAAAAGGATAGTTTTTTTAAATTTTTTTTTAATTTTTTTAACTTTCCATGAAGGTCACACATATCAATTTGGTCCAATTTGATTCCTGAAAATGGAATTAGGAAGTAAAAGCATAATATTGTTGACACCTTAGATGTCCACTAACATGATGATAATGATGCTTAATGCAAGTGATGTGGAGCGGATAATAAAGCATTTATGGAGTACGGGAACTCATGTATTGATAATTATGTAGACTTTTGAGTTTCCACAGATCCTTTTTTCCTTATTTTTAAGAATACGGGCATAAAGGATTAATAATTTATTTGAAGTGAAAAAAAAAAAAAGTTAAGGTGAACTGTGGCCCTTGGTGTATATATATGAAAATTATTCAGATCTTCCCGTTTGCCTTTTTTCTTCGAGTTTCCCAGTCAACTTCCTTCCCTCAATTTTCTTTTTATATGTTGTCCTGCAATATGAATGACTTTCACCCCGACCCCATTATCCAACCTTTGTCACGTTAATGTGGGTTTTCATGGAAAACTGTTGGTGTCGTTTTTCACTTATTTTAATTGATTCAAGAAAGGTGAGAAGAGAAGAAACAAAGTAGCATTACCCTCCTTTCTATTTGTTTAGCTATTTTTATTTTAATTTTTTCCTGTTTTCGTTATACTGATAATTTATTTAGAGTGCAAGTTCTGTTTATGCATGGTGTAACTTAATATTAGTGAAAGTACAAAGTCGATAGAAAACAAATACAATAGGAAAAGAACCTTTCCAAACTATCTTCTGAAGTAAACTAATTGAAAACATTTTTATTAAGAAAGTAGATTTCCAATAATTTGTGAGAGAAGTTTAAGAGGGTATTGTTCACTTCTAATTCATATGCCTTCTGAAACCAACTTTTTCTTCATGAGTTTTCTTCTGCTATTTTCTCGTTCTTGTTTTTTTTAATGTCTTGTGAAGCCTTCCGGAATGTCATTATGTCTAGATTTTAAGAAGTCTTAGGAGGTTATTGCAATATCGAATCAATGGAATACTTTTTCTCGAGCACCTTTGAATGCTCAAATGCTGCTTCCATTTAGATTTTTTTTTAATTAAAAAACTGTATGCAGATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAATTGCAGTTTTTGTTGGCTAATCTCCAACCAAGTCGAACAAGCTTTTTAATCTTGTTGCTTCACTTATCAACCCATGGCAGTGTTGTTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGATATGCGTTTATTCAATACACTTGCCAAGACGATGCGATGCTTGCACTGGAAAATATGGATTGCAAGGTTAAAAACTTCACCTAGCTTTGTCTTTTGTAGATAATGTTGTTAATGTTGCTTCACCTAGATTTGTCTTGAAAGTTAATGTTGTTTCTTCTGTCTCCCAAAACCAGATATTTGATGGAAGGACGATCTATGTGGAAATTGCAAAACCTGGTAGCGGTTCCTTTGGAGGATACCCAAGAACCTCTGGACCCCCAAAAGAGCGGCCTAACGTGGAGCAAGAAGATATAGCAGATTGTTGGTATTGAGCTTCCTTTTTCTGAGAAGCACAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAATGAGATTTAGATCAATTTCAAAGAATCTATGAGTGTTGAAGTGTTTGCTGAGATGGATTCATTTCATTTATTTTCATAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAGCTCTTCTCCTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTTACTGCATCTCGCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGATTGTGGAATATGCGGAAATTCGTAAAGCAAATACCTTTACAAGT

mRNA sequence

AAAATTAAAACCGTCCGGTGTTATGAAAATAAGAAACCGCGAATTCGAGCTGTGAGGTGCGATCGATCGATCGAACGAGCAAAGCTCCAGGACGTGGACTGAGCAGATTTGGGCTCCAACATGTGGGCGACAACCGTCTCCTTACCTTCAATTTCAAATCTTCGGGGACCCGTTTTTCCGAATAATCCGCTTGTCGCTTCCAATCGCCCATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTGTTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGATATGCGTTTATTCAATACACTTGCCAAGACGATGCGATGCTTGCACTGGAAAATATGGATTGCAAGATATTTGATGGAAGGACGATCTATGTGGAAATTGCAAAACCTGGTAGCGGTTCCTTTGGAGGATACCCAAGAACCTCTGGACCCCCAAAAGAGCGGCCTAACGTGGAGCAAGAAGATATAGCAGATTGTTGGTATTGAGCTTCCTTTTTCTGAGAAGCACAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAATGAGATTTAGATCAATTTCAAAGAATCTATGAGTGTTGAAGTGTTTGCTGAGATGGATTCATTTCATTTATTTTCATAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAGCTCTTCTCCTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTTACTGCATCTCGCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGATTGTGGAATATGCGGAAATTCGTAAAGCAAATACCTTTACAAGT

Coding sequence (CDS)

ATGTGGGCGACAACCGTCTCCTTACCTTCAATTTCAAATCTTCGGGGACCCGTTTTTCCGAATAATCCGCTTGTCGCTTCCAATCGCCCATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTGTTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGATATGCGTTTATTCAATACACTTGCCAAGACGATGCGATGCTTGCACTGGAAAATATGGATTGCAAGATATTTGATGGAAGGACGATCTATGTGGAAATTGCAAAACCTGGTAGCGGTTCCTTTGGAGGATACCCAAGAACCTCTGGACCCCCAAAAGAGCGGCCTAACGTGGAGCAAGAAGATATAGCAGATTGTTGGTATTGA

Protein sequence

MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY

Homology

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BLAST of MELO3C007029.2 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 322.0 bits (824), Expect = 1.1e-84
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 155
           AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of MELO3C007029.2 vs. NCBI nr
Match: XP_004134540.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 hypothetical protein Csa_6G526430 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 6.4e-77
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVS PS+SNLRGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE MDCKIFDGR IYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERP----NVEQEDIADCWY 155
           A PGSGSFGGYPR SGPPKERP    NV+QED+ADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of MELO3C007029.2 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 1.0e-66
Identity = 129/156 (82.69%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADCWY 155
           AKPGSGSFGGYP TSGPPKER  P +  E++ADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.2 vs. NCBI nr
Match: XP_023543104.1 (small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 8.7e-66
Identity = 128/156 (82.05%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADCWY 155
           AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.2 vs. NCBI nr
Match: XP_022926008.1 (small RNA-binding protein 11, chloroplastic [Cucurbita moschata])

HSP 1 Score: 257.3 bits (656), Expect = 3.3e-65
Identity = 127/156 (81.41%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  +N L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADCWY 155
           AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.2 vs. TAIR10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 84/164 (51.22%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 1   MWATTVSLP-------SISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLP 60
           MW+ T+S P       S+ N R   FP             ++AS F+YPLAS++MVRNLP
Sbjct: 1   MWSATLSFPSFVASSSSLPNYRNLRFP------------KIKASLFNYPLASKIMVRNLP 60

Query: 61  YSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDG 120
           +ST+E  L+ EFS FGEIAEV L KD + KR KGYAFIQ+T QDDA LA+E MD ++++G
Sbjct: 61  FSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNG 120

Query: 121 RTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQ---EDIADCWY 155
           R IY++IAKPG   F G PRTSGPP++    E+   +++ADCWY
Sbjct: 121 RMIYIDIAKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152

[Close]

BLAST of MELO3C007029.2 vs. TAIR10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-15
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLAL 103
           A RL V  LPYST E  L E FS FG+I+EV L  D+ T+  +G AF+ Y   + A +A+
Sbjct: 226 AGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285

Query: 104 ENMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQE 148
           + +D   F GRT+++  AKP + S      +S  PK      +E
Sbjct: 286 DKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREE 329

[Close]

BLAST of MELO3C007029.2 vs. TAIR10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-15
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++++L V  L   T +  L++ FS FG+I E  L +D  T+RPKG+ FI +  +DDA  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 103 LENMDCKIFDGRTIYVEIAK 123
           L+++D KI DGR I+VE+AK
Sbjct: 65  LKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of MELO3C007029.2 vs. TAIR10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-14
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALEN 105
           RL VRNLPY+  E  L E FS FG+I+EV L  D+ TKR +G A+I Y   + A  A+E 
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354

Query: 106 MDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPK 140
           +D   F GR +++  AK    S      TS  PK
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPK 388

[Close]

BLAST of MELO3C007029.2 vs. TAIR10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.4e-14
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE 104
           ++L V  L + T E  L++ F  FG +  + +  D+   RPKG+AF++Y  +++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGP-PKERP 143
            M  K  DGR I+VE AK  S      PR   P P+ +P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175

[Close]

BLAST of MELO3C007029.2 vs. Swiss-Prot
Match: sp|Q54PB2|MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLAL 103
           + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419

Query: 104 ENMDCKIFDGRTIYV 119
            +MD K+F GR I+V
Sbjct: 420 NDMDGKVFQGRLIHV 434

[Close]

BLAST of MELO3C007029.2 vs. Swiss-Prot
Match: sp|Q9FX45|ORRM6_ARATH (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE 104
           ++L V  L + T E  L++ F  FG +  + +  D+   RPKG+AF++Y  +++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGP-PKERP 143
            M  K  DGR I+VE AK  S      PR   P P+ +P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175

[Close]

BLAST of MELO3C007029.2 vs. Swiss-Prot
Match: sp|Q9FFZ6|RBP11_ARATH (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           +AS+L +  L + T E  L E FS  G++ E  +  DR + R KG+ F+ +   D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 103 LENMDCKIFDGRTIYVEI--AKPGSGSFGGYPRTSGPP 139
           L   + +  +GRTI+V+   AK   G  GGYP   GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]

BLAST of MELO3C007029.2 vs. Swiss-Prot
Match: sp|W8E7I1|RBM3_CAPHI (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALEN 105
           +L V  L ++T+E  L++ FS+FG I+EV++ KDR T+R +G+ FI +T  + A  A+  
Sbjct: 7   KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query: 106 MDCKIFDGRTIYVEIAKPGS-----GSFGGYPRTSGPPK 140
           M+ +  DGR I V+ A   +     G+FG Y R  G P+
Sbjct: 67  MNGESLDGRQIRVDHAGKSARGSRGGAFGSYERGRGYPR 105

[Close]

BLAST of MELO3C007029.2 vs. Swiss-Prot
Match: sp|Q5BGA9|MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-12
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           +++RL VRNL Y T ES L+  FS FG+I E+ +A D      KG+A++QY   D A+ A
Sbjct: 293 ISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEA 352

Query: 103 LENMDCKIFDGRTIYV 119
             N+D KIF GR +++
Sbjct: 353 YRNLDGKIFQGRLLHI 368

[Close]

BLAST of MELO3C007029.2 vs. TrEMBL
Match: tr|A0A1S3AYG0|A0A1S3AYG0_CUCME (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 7.2e-85
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 155
           AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of MELO3C007029.2 vs. TrEMBL
Match: tr|A0A0A0KL21|A0A0A0KL21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.3e-77
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVS PS+SNLRGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE MDCKIFDGR IYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERP----NVEQEDIADCWY 155
           A PGSGSFGGYPR SGPPKERP    NV+QED+ADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of MELO3C007029.2 vs. TrEMBL
Match: tr|A0A2P6Q7C4|A0A2P6Q7C4_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0020731 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 5.4e-48
Identity = 100/159 (62.89%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVA--SNR---PSLNLRASFFDYPLASRLMVRNLPYS 60
           MWA  VS PS +  +    P N L A  SNR    SL LRASF+DYPLASR+MV+N+PYS
Sbjct: 1   MWAAPVSFPSYNYGK----PINTLQASGSNRRVPMSLKLRASFYDYPLASRIMVKNIPYS 60

Query: 61  TNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRT 120
           T+E+ LQ++FSNFGEIAEV L KD ++KR KG+AFIQYT QDDAMLALENMD + FDGR 
Sbjct: 61  TSENSLQQKFSNFGEIAEVKLVKDETSKRSKGFAFIQYTSQDDAMLALENMDHQTFDGRV 120

Query: 121 IYVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 155
           IYVE+AKPG  ++ GYP+TSGPPK++   +QE++ DCWY
Sbjct: 121 IYVELAKPGKDAYAGYPKTSGPPKKQYMQQQEEVTDCWY 155

[Close]

BLAST of MELO3C007029.2 vs. TrEMBL
Match: tr|W9RS49|W9RS49_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_004913 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.6e-46
Identity = 100/160 (62.50%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MWA--TTVSLPSISNLRGPVFPNNPLVASNRP---SLNLRASFFDYPLASRLMVRNLPYS 60
           MWA  TT+S P  +N   PV    P++ +NR    SL LRASFFDYPLASR++VRNLPYS
Sbjct: 1   MWATPTTISFPPSAN---PVRIRIPILRTNRTEFNSLKLRASFFDYPLASRIIVRNLPYS 60

Query: 61  TNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRT 120
           T+E  L E FSNFG+IAEV L KD+ T+R KG+AFIQ+T QDDAMLA+ENMD +  DGR 
Sbjct: 61  TSERSLLENFSNFGQIAEVKLIKDKMTRRSKGFAFIQFTSQDDAMLAIENMDHQNLDGRL 120

Query: 121 IYVEIAKPGSGSFGGYPRTSGPPKERPNVE-QEDIADCWY 155
           IYVEIAKPG  +FGGY RTSGPPK++ +++  E+ ADCWY
Sbjct: 121 IYVEIAKPGKDAFGGYLRTSGPPKQQQHLQVLEEAADCWY 157

[Close]

BLAST of MELO3C007029.2 vs. TrEMBL
Match: tr|A0A2I4GBC2|A0A2I4GBC2_9ROSI (glycine-rich RNA-binding protein 4, mitochondrial OS=Juglans regia OX=51240 GN=LOC109006369 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.6e-46
Identity = 99/158 (62.66%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 1   MW--ATTVSL--PSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYST 60
           MW  ATTVS   P  +    P   N+    +NR SL LRAS  +YPLASR+MVRNLPYS 
Sbjct: 1   MWASATTVSFPWPCYAISARPTSRNSLTNFTNRNSLKLRASLLEYPLASRIMVRNLPYSA 60

Query: 61  NESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTI 120
           +E  LQ+EFSNFG+IA+V L K+ +T R KGYAFIQYTCQ+DAMLALENMD K FDGR I
Sbjct: 61  DERSLQKEFSNFGQIADVKLVKNEATNRSKGYAFIQYTCQEDAMLALENMDYKNFDGRVI 120

Query: 121 YVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 155
           YVE+AKPG G+FG  P TSGPPK R   EQ ++ DCWY
Sbjct: 121 YVELAKPGGGTFGRSPITSGPPKVRRLQEQNEVPDCWY 158

The following BLAST results are available for this feature:

BLAST of MELO3C007029.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439484.1	1.1e-84	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_004134540.1	6.4e-77	90.51	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >...	[more]
XP_022977992.1	1.0e-66	82.69	small RNA-binding protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_023543104.1	8.7e-66	82.05	small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022926008.1	3.3e-65	81.41	small RNA-binding protein 11, chloroplastic [Cucurbita moschata]	[more]

BLAST of MELO3C007029.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20030.1	1.1e-41	51.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08695.1	2.2e-15	39.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	6.5e-15	45.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	3.2e-14	43.62	nucleotide binding;nucleic acid binding;RNA binding	[more]
AT1G73530.1	9.4e-14	36.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of MELO3C007029.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54PB2\|MRD1_DICDI	1.3e-12	46.67	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=...	[more]
sp\|Q9FX45\|ORRM6_ARATH	1.7e-12	36.36	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|Q9FFZ6\|RBP11_ARATH	1.7e-12	37.76	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|W8E7I1\|RBM3_CAPHI	3.8e-12	38.38	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]
sp\|Q5BGA9\|MRD1_EMENI	6.4e-12	44.74	Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain ...	[more]

BLAST of MELO3C007029.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYG0\|A0A1S3AYG0_CUCME	7.2e-85	100.00	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0KL21\|A0A0A0KL21_CUCSA	4.3e-77	90.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1	[more]
tr\|A0A2P6Q7C4\|A0A2P6Q7C4_ROSCH	5.4e-48	62.89	Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa c...	[more]
tr\|W9RS49\|W9RS49_9ROSA	6.6e-46	62.50	Glycine-rich RNA-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_004913 P...	[more]
tr\|A0A2I4GBC2\|A0A2I4GBC2_9ROSI	6.6e-46	62.66	glycine-rich RNA-binding protein 4, mitochondrial OS=Juglans regia OX=51240 GN=L...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007029.2.1	MELO3C007029.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..119 e-value: 4.7E-24 score: 95.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..116 e-value: 1.6E-19 score: 69.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..123 score: 18.444
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 33..127 e-value: 1.4E-25 score: 92.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..154
None	No IPR available	PANTHER	PTHR45502	FAMILY NOT NAMED	coord: 39..140
None	No IPR available	CDD	cd12316	RRM3_RBM19_RRM2_MRD1	coord: 46..118 e-value: 2.12184E-24 score: 90.0492
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 16..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007029.2	Csa6G526430	Cucumber (Chinese Long) v2	cumedB486
MELO3C007029.2	CSPI06G37320	Wild cucumber (PI 183967)	cpimedB496
MELO3C007029.2	Cucsa.048700	Cucumber (Gy14) v1	cgymedB025
MELO3C007029.2	CmoCh03G014830	Cucurbita moschata (Rifu)	cmomedB695
MELO3C007029.2	Lsi01G000400	Bottle gourd (USVL1VR-Ls)	lsimedB156
MELO3C007029.2	Cp4.1LG10g06790	Cucurbita pepo (Zucchini)	cpemedB081
MELO3C007029.2	CsGy6G036680	Cucumber (Gy14) v2	cgybmedB442
MELO3C007029.2	ClCG01G025560	Watermelon (Charleston Gray)	medwcgB510
MELO3C007029.2	Cla97C01G025710	Watermelon (97103) v2	medwmbB507
MELO3C007029.2	Carg26324	Silver-seed gourd	carmedB0857
MELO3C007029.2	CsaV3_6G052810	Cucumber (Chinese Long) v3	cucmedB508

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007029.2	Cucurbita moschata (Rifu)	cmomedB886
MELO3C007029.2	Cucurbita pepo (Zucchini)	cpemedB540
MELO3C007029.2	Watermelon (97103) v1	medwmB561
MELO3C007029.2	Silver-seed gourd	carmedB0736
MELO3C007029.2	Wax gourd	medwgoB657
MELO3C007029.2	Cucurbita maxima (Rimu)	cmamedB704
MELO3C007029.2	Cucurbita maxima (Rimu)	cmamedB897