Cp4.1LG10g06790 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g06790
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRNA binding protein, putative
LocationCp4.1LG10 : 168221 .. 172531 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTGTTGGGACGAAATAAGGAAAGGCAAAAGGAAGCATTTTTATGTAAAAATGGTTTGAGGGTATGGAAATAAGAAACCGCGAATTTGGGGTTTTACTTTTAAGGTGCGAACCCGGGAACCAACAAAGCTCCACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAATAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCCGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAGTAATTTCACTTCCCTCTTCCTTTCCTCTTCCTCTGCATTTCACGACCCCTTTCCTTCATTTCCCACTTGGAAATTCCCCCCCAATTTCTTGTGTTCGCTGTGATGTTGTTGGAGTCCGTTCTTGGCTTGCGATGTGAATTTTTCCGCTTTGATTCATTTTTCTGTTGCTCATCGATCACTGCTGGGTCGGTTGGTGAGTCACCCCCCAAAAAGCATCGATTTTACCTATTCCTGTTTCTCTCCTTTTGTTTTAGTTTTTTTTGGCTGCTGTCCTGTTTCTTCTTGGCTTTACCCTTTCGTTAATGATGCTATTTTTGTTCCTTTGGTTTATTTTTCAAGTCTTGTTTCTACTGGAAGTTTATGGTGCCGTCTGCCTGTTTTCTTTTACACCAACCATGAATTTTATACAAACTGAAGAGAAGGTACCATGAAAGTTCTGCGTGGTTCATTATAGATGAGCGAGCAAGATAGATATCCAAAGGCATTGAGTTGAAAATTTCCCCATTTTATTAAGGAATGTTTAAGAAGTTGTGAGAAAGAAATTCAAGCTACACGAAAAAGGAAGGGAAAGCTGCAAGAAACTACTTCAATCTAAATTAATAATCCCATCAGCTACTAAAATATTATATGAACTGTAAACTTCCAGGCAGTGAGGAAGACAAGGTCTTTGACCATGTGCCTCTTTAAAAAGAAAATCTTTCGTTGAATTGATTTTGTTTGAAACTTTTCTTAAATTCATGTCTCTGTGTGAAATTGACTAGAGATACAAACTTGTTTCTCTTGTTCATGGAAGTTATAATTCCTTCAAACTTTTAGCATACTCTGTGACTCTATTTGGCCTACACAACTTTAGGTAGATAAATTCACAAGCTTAAAGGGTAGTTTGTTCATCAAGTTTTGATTCCTGAAAATGGGATCGAAAAAGTAAAGCACAATAATGTTGACACCTGCATACAGATAAGGATGTTTAGTGCAAGTGATGTGGATTGGATAATAAAGCATCAATGGAATACTGGAGCTAATGTATTGAGAATTATGTGGACTTTCGCGTTTCAACTAAGATATTTGTTTCTTTTCATCCTACTCCTTTTACTTTTAAGAATAGGGCCAGAAAGGATCAATAATTTATTTGAAATGTGAAGAAAAAAGAAAGAGTTTAAGATTGACTGTGCCTCTTGGTGTCTATCTATAAAACTTATCGAGCTCTTCACATCGCCTTTTCTCGTACTTTCCTGTCAACTTCCTTTCCTCTATTTTTCATGGTATGTGTTGTCTTGCAATATGAATGACTTTCACCTACCATAACGCTATCGTTTATCCAGGCATCCTTCACTTTTGAACAATGCCTATCCACATTGAGTTCGTTACCGTCTTATCTATTTGTTAACAGTTTTATTTTTCAGTTTTTCCTGTTCTCAATATTGTTTCTCAAGGTAACTGATCATTCATTATGATCACTGAGTTCTGTTTATGCATGGCGTAAGTTAAAAAGAACCTTTCCAAATTGTCTTTTGAAGTAAACTAAAAGAAAAACAGATCTTCAGTACATATTTTTCTTGATGTTTTGTGAAGTCTTTTGGAATCTCAAGATGTGTATATTAAAAAAAAAAAAATGCAGATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAACTGCATTTCTTTTCTCGTTGAGCGATTAAACTATTATATGATGTCAATTTCCAGCCAAGTCCAATATGCCTTATAATCTTGCTGCTTCTCTTATCAACCTATGACAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGGTTAAACTTCATCTAGCTCTGTCATTGCCACATGAGGTAACTCATGGTTTAAAGTTAATGTACTTTCTCTGTGTCTCGAAACCAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGATCTTGTTCTTACTGAGATACACAATATAGGACAGAGATGGGTTAACAGTTAATGACAGTTGGGCACCATGAGATCAATCCCAAAGAATCTGTGAGGGTTGAAGTGTTTGTTGTGATGGATTCCTTACATTCCTCTTAATAGTTTCAGGCTTTAGATGCTGATGCCATCCTGCAACTTTGATATCTATTTGTATTTACACTGTTTACGACACTTGATGCGTCTTCTAGTGCATATTGCTGTATGTGGCGTAGCAATTGAGATTATGGATAATGTGGTAATTCATAAAGCAAATGCTTCTACTACTCTGTTGTTTTTTGGTCCAAATTCAACGTGTATTATGTTTTTTTAGTCGGTTTTTAATGTCATAACTTACACCAAACTTTTGGAATGATAATTGAAGCCTCAAGAAGTGTGCCCCATTGACTAAGATTCATAGGTTTTTAGGGACTCCTATAAGAGGTTACAGGTTCGAATAAGAAAAGTCCTAGATGTCTCTAAAGTACAGGCGTTGGGCGTGTTTTGTTTTGTAATAATTAAGAAATTGAGGAGATTCATTTCTTGCATCATACTCATGTGTTCTACTTCTACTAAGGTAAAGCAAGGTCTTATTGTGTTGCACTTTGGGAGCGTTCGTATTCACACTATGGGGAATCACTTCTAGACAGGGGGGTCCCAGTCCAACCACGCCTACTGCTTCCCCTCATCTTCTCAAAAAAGGGAGAATTCTAAAGTAGCTTTTATTAACTTTTGCAGCTTCATCAATAGATACGTCTCTACTCTTCCCTCATCAAAAGTACATAACGTAAGAAGACAAAAACACCAAAATCTAGTTTTATCCCAAACAACCCACCTGACTTCAACTAATTTCCTCATCAATCTCAACTCAACTCTTGGGGGATCATTTTTATTGCTTTACCTGATTCGTTTTAAGTGTACTGCTTCTTGATCTGTGCAGCTTTAGTTGACATTACACTATGTGATGTATAGAAGTAGCAGAATCCTTGGGGGTTTTAAGTGTACTGCTTATTGATCTGTGCAGCTTTAGTTGACATTACACTATGTGATGTATAGAAGTAGCAGAATCCTTGGGGGGCTTGAGCTGATGCCTGCAGGTGGGGCAAGAAGAGTGAGACAGCAGCTTTAGTTGACATCATGTCTTGCTTCTTCATGCCCGAGTTCAGTCCTCTTAAAGCCACCCATTGGAATGTCTGTCTGAGGGTGTGATTGGCGCATTGAAGTATGCATGTCAGCATGGTATTTAAACCAAGTGTGTAAACAACGGCGCAAACAATTGCAGCCACAGTGACAAGGAGGTTGAAGTTGCTGCCTTGTTCTTGCTCGTGAGGGTACGCGAAAGATAAGCTCGGCAAGGGATTAAAGGAAGGAGTCGGAGAGGAGGAAGGCTCGGTGTACGAAGAACCGAGCATTTTTGCAAGCTGAAATGGCCGAGAAGGAAGCAGCATAAACTGTAACGCAAAAAAAAAAAAAAAAAAAAAAGGGGGGCTAAGTCAACGGAGGGGCAAAAATGTCATTTTGCCCCTCCAACCCAAATGGGGTCAAGGAAAATCCAGCCATATTGCCTGCAAAAGAAAAAAAAAAGGTTAGAGAGAGGTTAGAGAGAGATCGGCCGGGAAGACTAACGGACCACCGCCGGAATCCATCTCCAGACGAGACTCGTACCAGGATTGAGGGGCTAGCAAGGCCTACGCACCATCAAAACCTAAGAATATTTCGCGGGGTAAGGTTTCTGAACGATATTGCTCAGATCTGAGTTTTCCCCTACGGGAATCGACCCTAAAATGTTGAAATCTTCACCTAGGAACAACTCACGCACGGTCTGTGAAGAAGTTTGGCC

mRNA sequence

ATGGGGTATGGAAATAAGAAACCGCGAATTTGGGGTTTTACTTTTAAGGTGCGAACCCGGGAACCAACAAAGCTCCACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAATAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCCGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGAAGTAGCAGAATCCTTGGGGGGCTTGAGCTGATGCCTGCAGGTGGGGCAAGAAGAGTGAGACAGCAGCTTTAGTTGACATCATGTCTTGCTTCTTCATGCCCGAGTTCAGTCCTCTTAAAGCCACCCATTGGAATGTCTGTCTGAGGGTGTGATTGGCGCATTGAAGTATGCATGTCAGCATGGTATTTAAACCAAGTGTGTAAACAACGGCGCAAACAATTGCAGCCACAGTGACAAGGAGGTTGAAGTTGCTGCCTTGTTCTTGCTCGTGAGGGTACGCGAAAGATAAGCTCGGCAAGGGATTAAAGGAAGGAGTCGGAGAGGAGGAAGGCTCGGTGTACGAAGAACCGAGCATTTTTGCAAGCTGAAATGGCCGAGAAGGAAGCAGCATAAACTGTAACGCAAAAAAAAAAAAAAAAAAAAAAGGGGGGCTAAGTCAACGGAGGGGCAAAAATGTCATTTTGCCCCTCCAACCCAAATGGGGTCAAGGAAAATCCAGCCATATTGCCTGCAAAAGAAAAAAAAAAGGTTAGAGAGAGGTTAGAGAGAGATCGGCCGGGAAGACTAACGGACCACCGCCGGAATCCATCTCCAGACGAGACTCGTACCAGGATTGAGGGGCTAGCAAGGCCTACGCACCATCAAAACCTAAGAATATTTCGCTAGGAACAACTCACGCACGGTCTGTGAAGAAGTTTGGCC

Coding sequence (CDS)

ATGGGGTATGGAAATAAGAAACCGCGAATTTGGGGTTTTACTTTTAAGGTGCGAACCCGGGAACCAACAAAGCTCCACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAATAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCCGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGA

Protein sequence

MGYGNKKPRIWGFTFKVRTREPTKLHGVDWADFSSIMWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC
Homology
[Close]
BLAST of Cp4.1LG10g06790 vs. Swiss-Prot
Match: MRD1_ASPFU (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1 

Query: 79  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 138
           L+SRL VRNLPY  +E+ L+  FS FG+I E+ +A D  + T KG+A++QY   D A+ A
Sbjct: 299 LSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358

Query: 139 LENMDCKKFDGRTIYV 155
            + +D K F GR +++
Sbjct: 359 YKELDGKHFQGRLMHI 374

[Close]
BLAST of Cp4.1LG10g06790 vs. Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-12
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 82  RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 141
           +L +  L + TNE  L++ FS +G+I+EV++ KDR TK  +G+ F+ + + DDA  A+  
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 142 MDCKKFDGRTIYVELAKPGSGSFRG 167
           M+ K  DGR I V+ A   SG  RG
Sbjct: 66  MNGKAVDGRQIRVDQAGKSSGDRRG 90

[Close]
BLAST of Cp4.1LG10g06790 vs. Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 82  RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 141
           +L +  L + TNE+ L++ F+ +G I+EV++ KDR TK  +G+ F+ + + DDA  A+  
Sbjct: 6   KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query: 142 MDCKKFDGRTIYVELAKPGSGSFRG 167
           M+ K  DGR I V+ A   SG  RG
Sbjct: 66  MNGKSVDGRQIRVDQAGKSSGERRG 90

[Close]
BLAST of Cp4.1LG10g06790 vs. Swiss-Prot
Match: MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mrd1 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1 

Query: 79  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 138
           +++RL VRNL Y T E+ L+  FS FG+I E+ +A D    T KG+A++QY   D A+ A
Sbjct: 293 ISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEA 352

Query: 139 LENMDCKKFDGRTIYV 155
             N+D K F GR +++
Sbjct: 353 YRNLDGKIFQGRLLHI 368

[Close]
BLAST of Cp4.1LG10g06790 vs. Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.7e-11
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 82  RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 141
           +L V  L + TNE  L++ FS +G+I+EV++ KDR T+  +G+ F+ + + DDA  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 142 MDCKKFDGRTIYVELA-KPGSGSFRGY 168
           M+ K  DGR I V+ A K      RGY
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGY 93

[Close]
BLAST of Cp4.1LG10g06790 vs. TrEMBL
Match: A0A0A0KL21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 9.8e-62
Identity = 126/156 (80.77%), Postives = 133/156 (85.26%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWA TVSFPS+SNLRGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPK--LVPEEVADC 191
           A PGSGSF GYP  SGPPKERP  +  +  E+VADC
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADC 156

[Close]
BLAST of Cp4.1LG10g06790 vs. TrEMBL
Match: A0A067GF61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031755mg PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.6e-41
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWAA  +  S         L NR +   R + NLRAS S+YPLASR+MVRNLP++T+E+ 
Sbjct: 1   MWAAAAATVSYPQPMFANSLTNRENPCFR-TFNLRASLSNYPLASRIMVRNLPFTTHEHT 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQ+EFS FGE+AEV L KD +TK  KGYAFIQYTSQDDA+LALE+MD K  DGR IYV++
Sbjct: 61  LQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           AKPG   F GYP TSGPPK++P+ +   +EVADC
Sbjct: 121 AKPGKDRFGGYPRTSGPPKQQPLSE--QDEVADC 151

[Close]
BLAST of Cp4.1LG10g06790 vs. TrEMBL
Match: W9RS49_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004913 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.3e-41
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 1 

Query: 37  MWAA--TVSFPSLSN---LRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYS 96
           MWA   T+SFP  +N   +R PI   NR + +   SL LRASF DYPLASR++VRNLPYS
Sbjct: 1   MWATPTTISFPPSANPVRIRIPILRTNRTEFN---SLKLRASFFDYPLASRIIVRNLPYS 60

Query: 97  TNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRT 156
           T+E  L E FSNFG+IAEV L KD++T+  KG+AFIQ+TSQDDAMLA+ENMD +  DGR 
Sbjct: 61  TSERSLLENFSNFGQIAEVKLIKDKMTRRSKGFAFIQFTSQDDAMLAIENMDHQNLDGRL 120

Query: 157 IYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           IYVE+AKPG  +F GY  TSGPPK++   +++ EE ADC
Sbjct: 121 IYVEIAKPGKDAFGGYLRTSGPPKQQQHLQVL-EEAADC 155

[Close]
BLAST of Cp4.1LG10g06790 vs. TrEMBL
Match: V4TN06_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016768mg PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.6e-41
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 1 

Query: 39  AATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQ 98
           AATVS+P          L NR +   R + NLRAS S+YPLASR+MVRNLP++T+E+ LQ
Sbjct: 53  AATVSYPQPMFANS---LTNRENPCFR-TFNLRASLSNYPLASRIMVRNLPFTTHEHTLQ 112

Query: 99  EEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVELAK 158
           +EFS FGE+AEV L KD +TK  KGYAFIQYTSQDDA+LALE+MD K  DGR IYV++AK
Sbjct: 113 KEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDIAK 172

Query: 159 PGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           PG   F GYP TSGPPK++P+ +   +EVADC
Sbjct: 173 PGKDRFGGYPRTSGPPKQQPLSE--QDEVADC 198

[Close]
BLAST of Cp4.1LG10g06790 vs. TrEMBL
Match: M5WVL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012726mg PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.4e-39
Identity = 91/162 (56.17%), Postives = 118/162 (72.84%), Query Frame = 1 

Query: 37  MWAATVSFPS--------LSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNL 96
           MWAA +S  S        +++LR  +  +NR  S   +SL LRASF DYPLAS+++V+N+
Sbjct: 1   MWAAGISLSSPFYAYPKPINSLRSSV--SNRTGS---KSLKLRASFFDYPLASKILVKNI 60

Query: 97  PYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFD 156
           PYST+EN LQE+FSNFG+IAEV L KD  ++  KGYA+IQYTSQDDAMLALENMD +  D
Sbjct: 61  PYSTSENSLQEKFSNFGQIAEVKLVKDETSRRSKGYAYIQYTSQDDAMLALENMDHQNLD 120

Query: 157 GRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           GR IYVE+A+PG  ++  YP TSGPPK+  + +   EEV+DC
Sbjct: 121 GRIIYVEVARPGKDAYGEYPKTSGPPKKLNLQQ--QEEVSDC 155

[Close]
BLAST of Cp4.1LG10g06790 vs. TAIR10
Match: AT4G20030.1 (AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-39
Identity = 82/155 (52.90%), Postives = 107/155 (69.03%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MW+AT+SFPS       +P    L   K     ++AS  +YPLAS++MVRNLP+ST+E+ 
Sbjct: 1   MWSATLSFPSFVASSSSLPNYRNLRFPK-----IKASLFNYPLASKIMVRNLPFSTSEDF 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           L+ EFS FGEIAEV L KD   K  KGYAFIQ+TSQDDA LA+E MD + ++GR IY+++
Sbjct: 61  LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIP-KLVPEEVADC 191
           AKPG   F+G P TSGPP++   P +   +EVADC
Sbjct: 121 AKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADC 150

[Close]
BLAST of Cp4.1LG10g06790 vs. TAIR10
Match: AT5G08695.1 (AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 4.7e-15
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1 

Query: 67  SLNLRASFSDYPL-ASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYA 126
           ++ + A  SD  L A RL V  LPYST E  L E FS FG+I+EV L  D+ T++ +G A
Sbjct: 212 AMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMA 271

Query: 127 FIQYTSQDDAMLALENMDCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPK 176
           F+ Y   + A +A++ +D   F GRT+++  AKP + S +    +S  PK
Sbjct: 272 FVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPK 321

[Close]
BLAST of Cp4.1LG10g06790 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.8e-14
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 1 

Query: 79  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 138
           +AS+L +  L + T E  L E FS  G++ E  +  DR++   KG+ F+ + S D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 139 LENMDCKKFDGRTIYVEL--AKPGSGSFRGYPVTSGPP 175
           L   + ++ +GRTI+V+   AK   G   GYP+  GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]
BLAST of Cp4.1LG10g06790 vs. TAIR10
Match: AT4G19610.1 (AT4G19610.1 nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-13
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 1 

Query: 82  RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 141
           RL VRNLPY+  E  L E FS FG+I+EV L  D+ TK  +G A+I Y   + A  A+E 
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354

Query: 142 MDCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPK 176
           +D   F GR +++  AK    S +    TS  PK
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPK 388

[Close]
BLAST of Cp4.1LG10g06790 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-13
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 79  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 138
           ++++L V  L   T +  L++ FS FG+I E  L +D  T+ PKG+ FI + S+DDA  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 139 LENMDCKKFDGRTIYVELAK 159
           L+++D K  DGR I+VE+AK
Sbjct: 65  LKSLDGKIVDGRLIFVEVAK 84

[Close]
BLAST of Cp4.1LG10g06790 vs. NCBI nr
Match: gi|659077977|ref|XP_008439484.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 3.4e-63
Identity = 126/154 (81.82%), Postives = 134/154 (87.01%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           AKPGSGSF GYP TSGPPKER  P +  E++ADC
Sbjct: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADC 152

[Close]
BLAST of Cp4.1LG10g06790 vs. NCBI nr
Match: gi|449433509|ref|XP_004134540.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61
Identity = 126/156 (80.77%), Postives = 133/156 (85.26%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWA TVSFPS+SNLRGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPK--LVPEEVADC 191
           A PGSGSF GYP  SGPPKERP  +  +  E+VADC
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADC 156

[Close]
BLAST of Cp4.1LG10g06790 vs. NCBI nr
Match: gi|694326152|ref|XP_009353996.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 187.2 bits (474), Expect = 2.7e-44
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWAATVSFP  ++ + PI L+NR DS K   L +R+SF DYPLAS+++V+N+PYST+EN 
Sbjct: 1   MWAATVSFPCYAHPK-PIHLSNRTDS-KPLKLQVRSSFFDYPLASKILVKNIPYSTSENS 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQ++FS+FG+IAEV L KD  ++  KG+AFIQYTSQDDAMLALENMD K  DGR IYVEL
Sbjct: 61  LQQKFSSFGQIAEVKLVKDESSRRSKGFAFIQYTSQDDAMLALENMDRKNLDGRIIYVEL 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           A+PG  ++  YP TSGPPK++ +P+   EEVADC
Sbjct: 121 ARPGKDAYGEYPRTSGPPKKQNLPQ--QEEVADC 150

[Close]
BLAST of Cp4.1LG10g06790 vs. NCBI nr
Match: gi|657982477|ref|XP_008383279.1| (PREDICTED: putative RNA-binding protein 3 [Malus domestica])

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-43
Identity = 94/154 (61.04%), Postives = 121/154 (78.57%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWAATVSFP  ++ + PI L+NR DS K   L +RASF DYPLAS+++V+N+PYST+EN 
Sbjct: 1   MWAATVSFPCYAHPK-PIHLSNRTDS-KPLKLQMRASFFDYPLASKILVKNIPYSTSENS 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQ++FS+FG+IAEV L KD  ++  KG+AFIQYT QDDAMLALENMD +  DGR IYVEL
Sbjct: 61  LQQKFSSFGQIAEVKLVKDESSRRSKGFAFIQYTCQDDAMLALENMDRQNLDGRIIYVEL 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           A+PG  ++  YP TSGPPK++ +P+   EEV+DC
Sbjct: 121 ARPGKDAYGEYPRTSGPPKKQNLPQ--QEEVSDC 150

[Close]
BLAST of Cp4.1LG10g06790 vs. NCBI nr
Match: gi|694425081|ref|XP_009340294.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 179.1 bits (453), Expect = 7.3e-42
Identity = 93/154 (60.39%), Postives = 119/154 (77.27%), Query Frame = 1 

Query: 37  MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 96
           MWAATVSFP  ++ + PI L+NR DS K   L +RASF DYPLAS+++V+N+PYS  EN 
Sbjct: 1   MWAATVSFPCYAHPK-PIHLSNRTDS-KPLKLQVRASFFDYPLASKILVKNIPYSICENS 60

Query: 97  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 156
           LQ++FS+FG+IAEV L KD  ++  KG+AFIQYTSQDDAMLALENMD +   GR IYVEL
Sbjct: 61  LQQKFSSFGQIAEVKLVKDESSRRSKGFAFIQYTSQDDAMLALENMDRQNLGGRIIYVEL 120

Query: 157 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADC 191
           A+PG  ++  YP TSGPPK++ +P+   EEV+DC
Sbjct: 121 ARPGKDAYGEYPRTSGPPKKQNLPQ--QEEVSDC 150

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g06790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MRD1_ASPFU2.7e-1244.74Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain... [more]
CIRBB_XENLA4.6e-1241.18Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1[more]
CIRBA_XENLA1.7e-1140.00Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a PE=1 SV=2[more]
MRD1_EMENI2.3e-1143.42Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain ... [more]
CIRBP_HUMAN8.7e-1140.23Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1[more]
BLAST of Cp4.1LG10g06790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL21_CUCSA9.8e-6280.77Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526430 PE=4 SV=1[more]
A0A067GF61_CITSI5.6e-4159.74Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031755mg PE=4 SV=1[more]
W9RS49_9ROSA7.3e-4159.75Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004913 PE=4 SV=1[more]
V4TN06_9ROSI9.6e-4161.18Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016768mg PE=4 SV=1[more]
M5WVL0_PRUPE2.4e-3956.17Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012726mg PE=4 SV=1[more]
BLAST of Cp4.1LG10g06790 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G20030.16.1e-3952.90 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G08695.14.7e-1540.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G06210.16.8e-1436.73 RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT4G19610.12.6e-1342.55 nucleotide binding;nucleic acid binding;RNA binding[more]
AT3G46020.14.4e-1343.75 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG10g06790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077977|ref|XP_008439484.1|3.4e-6381.82PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo][more]
gi|449433509|ref|XP_004134540.1|1.4e-6180.77PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus][more]
gi|694326152|ref|XP_009353996.1|2.7e-4462.34PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x brets... [more]
gi|657982477|ref|XP_008383279.1|2.3e-4361.04PREDICTED: putative RNA-binding protein 3 [Malus domestica][more]
gi|694425081|ref|XP_009340294.1|7.3e-4260.39PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x brets... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g06790.1Cp4.1LG10g06790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 83..152
score: 3.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 82..155
score: 2.3
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 81..159
score: 18
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 76..160
score: 9.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 52..165
score: 7.66
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 30..41
score: 1.6E-23coord: 80..160
score: 1.6