Carg26324 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26324
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA binding protein, putative
Location	Cucurbita_argyrosperma_scaffold_465 : 15476 .. 18825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGGAAAGGCAAAAAAGGAAGCATTTTTATGTAAAAATTGTTTGGAGCCATGGAAATAAGAAACCGCGAATTTGGGGTTTTACTTTTAAGGTGCGAACCCGGGAACCAACAAAGCTCCACGGCGTCGACTTGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAGTAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAGTAATTTCACTTCCCTCTTCCTTTCCTCTTCCTCTGCATTTCACGACCCCTTTCCTTGATTTCCCATTTGGAAATTCCCCCCCAATTTCTTGTGTTCGCTGTGATGTTGTTGGAGTCCGTTCTTGGCTTGCGATGTGAATTTTTCCGCTTTGATTCATTTTTCTGTTGCTCCTCTTACTTGTTCCTGTTTCTCTCCTTTTGGTTTAGTTTTTTTTTTTTTTTTCTTTTTTTCTCTTTTACACCAACCATGAATTTTATACAAACTGAAGAGAAGGTACCATGAAGGTTCTGCGTGGTTCATTATAGATGAGCGAGCAAGATAGATATCCGAAGGCATTGAGTTGAAAATTTCCCCATTTTATTAAGGAATGTTTAAGAAGTTATGAGAAAAAAATTCAACCTACACGAAAAAGGAAGGGAAAGCTGCAAGAAACTACTTCAATCTAAATTAATAATCCCATCTGCTACTAAAATATTATATGAAATGTAAACTTCCAGGCAGTGAGGAAGACAAGGTCTTTGACCATGTGCCTCTTTAAAAGGAAAATCTTTCGTTGAATTGATTTTGTTTGAAACTTTTCTTAAATTCATGTCTCTGTGTGAAATTGACTAGAGCTACAAGCTTGTTTCTCTTGTTCATGGAAGTTATAATTCCTTCAAGCTTTTAGCATTCTCTGTGACTCTATTTGGCCTACACAACTTTAGTTAGATATATTCACAAGCTTAAAGGGTAGTTTGTTCATCAAGTTTTGATTCCTGAAAATGGGATCGAAAAGGTAAAGCACAATAATGTTGACACCTTAGATGTCCACTTGCATACAGATAAGGATGTTTAGTGCAAGTGATGTGGATTGGATAATAAAGCATCAATGGAATACTGGAGCTAATGTATTGAGAATTATGTGGACTTTCGCGTTTCAACTAAGATATTTGTTTCTTTTCATCCTACTCCTTTTACTTTTAAGAATAGGGCCAGAAAGGATCAATAATTTATTTGAAATGTGAAGAAAAAAGAAAGAGTTTAAGATTGACTGTGCCTCTTGGTGTCTATCTATAAAACTTATCGAGCTCTTCACATCGCCTTTTCTCGTACTTTCCTGTCAACTTCCTTTCCTCTATTTTTCATGTTATGTGTTGCCTTGCAATATGAATGACTTTCACCTACCATAACGCTATCGTTTATCCAGGCATCCTTCACTTTTGAACAATGCCTATCCACATTGAGTTCGTTACCGTCTTATCTATTTGTTAACAGTTTTATTTTTCAGTTTTTCCTGTTCTCAATATTGTTTCTCAAGGTAACTGATCATTCATTATGATCACTGAGTTCTGTTTATGCATGGCGTAAGTTAAAAAGAACCTTTCCAAATTGTCTTTTGAAGTAAACTAAAAGAAAAACAGATCTTCAGTACATATTTTTCTTGATGTTTTGTGAAGTCTTTTGGAATCTCAAGATGTGTATATTAAAAAAAAAAAATGCAGATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAACTGCATTTCTTTTCTCGTTGAGCGATTAAACTATTATATGATGTCAATTTCCAGCCAAGTCCAATATGCCTTATAATCTTGCTGCTTCTCTTATCAACCTATGACAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGGTTAAACTTCATCTAGCTCTGTCATTGCCACATGAGGTAACTCATGGTTTAAAGTTAATGTACTTTCTCTGTGTCTCGAAACCAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGATCTTGTTCTTACTGAGATACACAATATAGGACAGAGATGGGTTAACAGTTAATGACAGTTGGGCACCATGAGATCAATCCCAAAGAATCTGTGAGGGTTGAAGTGTTTGTTGTGATGGATTCCTTACATTCCTCTTAATAGTTTCAGGCTTTAGATGCTGATGCCATCCTGCAACTTTGATATCTATTTGTATTTACACTGTTTACGACACTTGATGCGTCTTCTAGTGCATATTGCTGTATGTGGCGTAGCAATTGAGATTATGGATAATGTGGTAATTCATAAAGCAAATGCTTCTACTACTCTGTTGTTTTTTGGTCCAAATTCAACGTGTATTATGTTTTTTTAGTCGGTTTTTAATGTCATAACTTACACCAAACTTTTGGAATGATAATTGAAGCCTCAAGAAGTGTGCCCCATTGACTAAGATTCATAGGTTTTTAGGGACTCCTATAAGAGGTTACAGGTTCGAATAAGAAAAGTCCTAGATGTCTCTAAAGTACAGGCGTTGGGCGTGTTTTGTTTTGTAATAATTAAGAAATTGAGGAGATTCATTTCTTGCATCATACTCATGTGTTCTACTTCTACTAAGGTAAAGCAAGGTCTTATTGTGTTGCACTTTGGGAGCGTTCGTATTCACACTATGGGGAATCACTTCTAGACAGGGGGGTCCCAGTCCAACCACGCCTACTGCTTCCCCTCATCTTCTCAAAAAAGGGAGAATTCTAAAGTAGCTTTTATTAACTTTTGCAGCTTCATCAATAGATACGTCTCTACTCTTCCCTCATCAAAAGTACATAACGTAAGAAGACAAAAACACCAAAATCTAGTTTTATCCCAAACAACCCACCTGACTTCAACTAATTTCCTCATCAATCTCAACTCAACTCTTGGGGGATCATTTTTATTGCTTTACCTGATTCGTTTTAAGTGTACTGCTTCTTGATCTGTGCAGCTTTAGTTGACATTACACTATGTGATGTATAGAAGTAGCAGAATCCTTGGGGGTTTTAAGTGTACTGCTTATTGATCTGTGCAGCTTTAGTTGA

mRNA sequence

ATAAGGAAAGGCAAAAAAGGAAGCATTTTTATGTAAAAATTGTTTGGAGCCATGGAAATAAGAAACCGCGAATTTGGGGTTTTACTTTTAAGGTGCGAACCCGGGAACCAACAAAGCTCCACGGCGTCGACTTGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAGTAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGATCTTGTTCTTACTGAGATACACAATATAGGACAGAGATGGGTTAACAGTTAATGACAGTTGGGCACCATGAGATCAATCCCAAAGAATCTGTGAGGGTTGAAGTGTTTGTTGTGATGGATTCCTTACATTCCTCTTAATAGTTTCAGGCTTTAGATGCTGATGCCATCCTGCAACTTTGATATCTATTTGTATTTACACTGTTTACGACACTTGATGCGTCTTCTAGTGCATATTGCTGTATGTGGCGTAGCAATTGAGATTATGGATAATGTGGTAATTCATAAACTCAACTCAACTCTTGGGGGATCATTTTTATTGCTTTACCTGATTCGTTTTAAGTGTACTGCTTCTTGATCTGTGCAGCTTTAGTTGACATTACACTATGTGATGTATAGAAGTAGCAGAATCCTTGGGGGTTTTAAGTGTACTGCTTATTGATCTGTGCAGCTTTAGTTGA

Coding sequence (CDS)

ATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAGTAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCCCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTCGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGA

Protein sequence

MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY

Homology

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BLAST of Carg26324 vs. NCBI nr
Match: XP_022926008.1 (small RNA-binding protein 11, chloroplastic [Cucurbita moschata])

HSP 1 Score: 319.7 bits (818), Expect = 5.5e-84
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

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BLAST of Carg26324 vs. NCBI nr
Match: XP_023543104.1 (small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.5 bits (815), Expect = 1.2e-83
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWAATVSFPSLSNLRGPIPL+NRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of Carg26324 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 315.8 bits (808), Expect = 7.9e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWAATVSFPSLSNLRGPIPL+NRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           AKPGSGSF GYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

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BLAST of Carg26324 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 9.8e-65
Identity = 127/156 (81.41%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWA TVS PS+SNLRGP+  +N L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADCWY 154

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BLAST of Carg26324 vs. NCBI nr
Match: XP_004134540.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 hypothetical protein Csa_6G526430 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 4.1e-63
Identity = 127/158 (80.38%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWA TVSFPS+SNLRGPI  +NRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPK--LVPEEVADCWY 157
           A PGSGSF GYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

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BLAST of Carg26324 vs. TAIR10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-41
Identity = 84/157 (53.50%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MW+AT+SFPS       +P    L   K     ++AS  +YPLAS++MVRNLP+ST+E+ 
Sbjct: 1   MWSATLSFPSFVASSSSLPNYRNLRFPK-----IKASLFNYPLASKIMVRNLPFSTSEDF 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           L+ EFS FGEIAEV L KD   K  KGYAFIQ+TSQDDA LA+E MD + ++GR IY+++
Sbjct: 61  LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIP-KLVPEEVADCWY 157
           AKPG   F+G P TSGPP++   P +   +EVADCWY
Sbjct: 121 AKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152

[Close]

BLAST of Carg26324 vs. TAIR10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-15
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 31  SLNLRASFSDYPL-ASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYA 90
           ++ + A  SD  L A RL V  LPYST E  L E FS FG+I+EV L  D+ T++ +G A
Sbjct: 212 AMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMA 271

Query: 91  FIQYTSQDDAMLALENMDCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPK 140
           F+ Y   + A +A++ +D   F GRT+++  AKP + S +    +S  PK
Sbjct: 272 FVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPK 321

[Close]

BLAST of Carg26324 vs. TAIR10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-14
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 102
           +AS+L +  L + T E  L E FS  G++ E  +  DR++   KG+ F+ + S D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 103 LENMDCKKFDGRTIYVEL--AKPGSGSFRGYPVTSGPP 139
           L   + ++ +GRTI+V+   AK   G   GYP+  GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]

BLAST of Carg26324 vs. TAIR10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 46  RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 105
           RL VRNLPY+  E  L E FS FG+I+EV L  D+ TK  +G A+I Y   + A  A+E 
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354

Query: 106 MDCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPK 140
           +D   F GR +++  AK    S +    TS  PK
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPK 388

[Close]

BLAST of Carg26324 vs. TAIR10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-13
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 45  SRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALE 104
           ++L V  L + T E+ L++ F  FG +  + +  D++   PKG+AF++Y ++++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKKFDGRTIYVELAKPGSGSFRGYPVTSGP-PKERP 143
            M  K  DGR I+VE AK  S   R  P    P P+ +P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175

[Close]

BLAST of Carg26324 vs. Swiss-Prot
Match: sp|Q9FFZ6|RBP11_ARATH (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 102
           +AS+L +  L + T E  L E FS  G++ E  +  DR++   KG+ F+ + S D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 103 LENMDCKKFDGRTIYVEL--AKPGSGSFRGYPVTSGPP 139
           L   + ++ +GRTI+V+   AK   G   GYP+  GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]

BLAST of Carg26324 vs. Swiss-Prot
Match: sp|Q4WJT7|MRD1_ASPFU (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 102
           L+SRL VRNLPY  +E+ L+  FS FG+I E+ +A D  + T KG+A++QY   D A+ A
Sbjct: 299 LSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358

Query: 103 LENMDCKKFDGRTIYV 119
            + +D K F GR +++
Sbjct: 359 YKELDGKHFQGRLMHI 374

[Close]

BLAST of Carg26324 vs. Swiss-Prot
Match: sp|Q9FX45|ORRM6_ARATH (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 0


Query: 45  SRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALE 104
           ++L V  L + T E+ L++ F  FG +  + +  D++   PKG+AF++Y ++++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKKFDGRTIYVELAKPGSGSFRGYPVTSGP-PKERP 143
            M  K  DGR I+VE AK  S   R  P    P P+ +P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175

[Close]

BLAST of Carg26324 vs. Swiss-Prot
Match: sp|Q9DED4|CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 46  RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 105
           +L +  L + TNE  L++ FS +G+I+EV++ KDR TK  +G+ F+ + + DDA  A+  
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 106 MDCKKFDGRTIYVELAKPGSGSFR 130
           M+ K  DGR I V+ A   SG  R
Sbjct: 66  MNGKAVDGRQIRVDQAGKSSGDRR 89

[Close]

BLAST of Carg26324 vs. Swiss-Prot
Match: sp|Q5BGA9|MRD1_EMENI (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 102
           +++RL VRNL Y T E+ L+  FS FG+I E+ +A D    T KG+A++QY   D A+ A
Sbjct: 293 ISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEA 352

Query: 103 LENMDCKKFDGRTIYV 119
             N+D K F GR +++
Sbjct: 353 YRNLDGKIFQGRLLHI 368

[Close]

BLAST of Carg26324 vs. TrEMBL
Match: tr|A0A1S3AYG0|A0A1S3AYG0_CUCME (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.5e-65
Identity = 127/156 (81.41%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWA TVS PS+SNLRGP+  +N L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           AKPGSGSF GYP TSGPPKER  P +  E++ADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADCWY 154

[Close]

BLAST of Carg26324 vs. TrEMBL
Match: tr|A0A0A0KL21|A0A0A0KL21_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.7e-63
Identity = 127/158 (80.38%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWA TVSFPS+SNLRGPI  +NRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPK--LVPEEVADCWY 157
           A PGSGSF GYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of Carg26324 vs. TrEMBL
Match: tr|A0A2P6Q7C4|A0A2P6Q7C4_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0020731 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.7e-47
Identity = 103/158 (65.19%), Postives = 120/158 (75.95%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKR--QSLNLRASFSDYPLASRLMVRNLPYSTNE 60
           MWAA VSFPS  N   PI       S++R   SL LRASF DYPLASR+MV+N+PYST+E
Sbjct: 1   MWAAPVSFPSY-NYGKPINTLQASGSNRRVPMSLKLRASFYDYPLASRIMVKNIPYSTSE 60

Query: 61  NRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYV 120
           N LQ++FSNFGEIAEV L KD  +K  KG+AFIQYTSQDDAMLALENMD + FDGR IYV
Sbjct: 61  NSLQQKFSNFGEIAEVKLVKDETSKRSKGFAFIQYTSQDDAMLALENMDHQTFDGRVIYV 120

Query: 121 ELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           ELAKPG  ++ GYP TSGPPK++ + +   EEV DCWY
Sbjct: 121 ELAKPGKDAYAGYPKTSGPPKKQYMQQ--QEEVTDCWY 155

[Close]

BLAST of Carg26324 vs. TrEMBL
Match: tr|A0A067GF61|A0A067GF61_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031755mg PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43
Identity = 94/156 (60.26%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60
           MWAA  +  S         L+NR +   R + NLRAS S+YPLASR+MVRNLP++T+E+ 
Sbjct: 1   MWAAAAATVSYPQPMFANSLTNRENPCFR-TFNLRASLSNYPLASRIMVRNLPFTTHEHT 60

Query: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120
           LQ+EFS FGE+AEV L KD +TK  KGYAFIQYTSQDDA+LALE+MD K  DGR IYV++
Sbjct: 61  LQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIYVDI 120

Query: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           AKPG   F GYP TSGPPK++P+ +   +EVADCWY
Sbjct: 121 AKPGKDRFGGYPRTSGPPKQQPLSE--QDEVADCWY 153

[Close]

BLAST of Carg26324 vs. TrEMBL
Match: tr|W9RS49|W9RS49_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_004913 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-43
Identity = 97/161 (60.25%), Postives = 121/161 (75.16%), Query Frame = 0


Query: 1   MWA--ATVSFPSLSN---LRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYS 60
           MWA   T+SFP  +N   +R PI  +NR + +   SL LRASF DYPLASR++VRNLPYS
Sbjct: 1   MWATPTTISFPPSANPVRIRIPILRTNRTEFN---SLKLRASFFDYPLASRIIVRNLPYS 60

Query: 61  TNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRT 120
           T+E  L E FSNFG+IAEV L KD++T+  KG+AFIQ+TSQDDAMLA+ENMD +  DGR 
Sbjct: 61  TSERSLLENFSNFGQIAEVKLIKDKMTRRSKGFAFIQFTSQDDAMLAIENMDHQNLDGRL 120

Query: 121 IYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 157
           IYVE+AKPG  +F GY  TSGPPK++   +++ EE ADCWY
Sbjct: 121 IYVEIAKPGKDAFGGYLRTSGPPKQQQHLQVL-EEAADCWY 157

The following BLAST results are available for this feature:

BLAST of Carg26324 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926008.1	5.5e-84	100.00	small RNA-binding protein 11, chloroplastic [Cucurbita moschata]	[more]
XP_023543104.1	1.2e-83	99.36	small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022977992.1	7.9e-83	98.72	small RNA-binding protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_008439484.1	9.8e-65	81.41	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_004134540.1	4.1e-63	80.38	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >...	[more]

BLAST of Carg26324 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20030.1	2.4e-41	53.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08695.1	3.9e-15	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	5.6e-14	36.73	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	2.1e-13	42.55	nucleotide binding;nucleic acid binding;RNA binding	[more]
AT1G73530.1	3.6e-13	35.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg26324 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FFZ6\|RBP11_ARATH	1.0e-12	36.73	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|Q4WJT7\|MRD1_ASPFU	2.2e-12	44.74	Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain...	[more]
sp\|Q9FX45\|ORRM6_ARATH	6.5e-12	35.35	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
sp\|Q9DED4\|CIRBB_XENLA	1.9e-11	40.48	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
sp\|Q5BGA9\|MRD1_EMENI	1.9e-11	43.42	Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain ...	[more]

BLAST of Carg26324 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYG0\|A0A1S3AYG0_CUCME	6.5e-65	81.41	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0KL21\|A0A0A0KL21_CUCSA	2.7e-63	80.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1	[more]
tr\|A0A2P6Q7C4\|A0A2P6Q7C4_ROSCH	2.7e-47	65.19	Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa c...	[more]
tr\|A0A067GF61\|A0A067GF61_CITSI	3.1e-43	60.26	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031755mg PE=4 SV=1	[more]
tr\|W9RS49\|W9RS49_9ROSA	4.1e-43	60.25	Glycine-rich RNA-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_004913 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26324-RA	Carg26324-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..119 e-value: 2.3E-24 score: 97.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..116 e-value: 2.2E-20 score: 72.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..123 score: 18.871
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 21..131 e-value: 3.5E-26 score: 93.7
None	No IPR available	PANTHER	PTHR45502	FAMILY NOT NAMED	coord: 42..139
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 17..129

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26324	Csa6G526430	Cucumber (Chinese Long) v2	carcuB0873
Carg26324	MELO3C007029	Melon (DHL92) v3.5.1	carmeB0846
Carg26324	ClCG01G025560	Watermelon (Charleston Gray)	carwcgB0831
Carg26324	CSPI06G37320	Wild cucumber (PI 183967)	carcpiB0893
Carg26324	Cucsa.048700	Cucumber (Gy14) v1	carcgyB0978
Carg26324	CmoCh03G014830	Cucurbita moschata (Rifu)	carcmoB1157
Carg26324	Lsi01G000400	Bottle gourd (USVL1VR-Ls)	carlsiB780
Carg26324	Cp4.1LG10g06790	Cucurbita pepo (Zucchini)	carcpeB1195
Carg26324	CsGy6G036680	Cucumber (Gy14) v2	carcgybB0847
Carg26324	MELO3C007029.2	Melon (DHL92) v3.6.1	carmedB0857
Carg26324	CsaV3_6G052810	Cucumber (Chinese Long) v3	carcucB0897
Carg26324	Cla97C01G025710	Watermelon (97103) v2	carwmbB0895

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26324	Cucurbita maxima (Rimu)	carcmaB1188
Carg26324	Watermelon (97103) v1	carwmB0858