ClCG01G025560 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G025560
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	RNA binding protein, putative
Location	CG_Chr01 : 38625208 .. 38628547 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAAATTGTTAGGGGCTATGAAAATAAGAAACCGCGAATTTGGGGTTTTGAGGAACGAACGAACGAACGAAGCTCCACGGCGTCGACTGGGCAGATTTGAGCTCCAACATGTGGGCGGCCACCGTCTCCTTCCCTTCAATTTCAAATCTTCGGGGACCCATTCTTCTGAATAATCGATTGGACGGTTCAAAGCGCCTATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGCAGACTCATGGTTAGAAGTAAATTCACTTGCCTCTTCCTTTCGTCTTGCTCTGCATTTTACCACCCCTTTTACTTGATTTCCTTGATTTCCCACTTCGAAATTTCCCCCCCAATTTAATGTGTTCGCTGTGATGTCAAATTTTCTGTTGCTCCTCTAGGTTGTTCCTGTTTCTTTCCTTTTGTCTTAGCTTGTTTGGTTGCTGTCTCGTTTCTTCTTGGGTTTGCCCTATTGTTATTTATGCTATTTTTGTGCCTTTGGTTTATTTTTCAATGCTTGTTTCTGCTGAAAGTTTATGCTGTTGTCTGCCTGACTACTCTAATCAGCGGTTTTTTTTATACCAATGAGGAAATTTATACAGCTAGCTAGGTTTGAAGGGTCAAAAGCGAACAATATGCGAGTTGTTTTAAGAAGGGAAGGTACCATGAAAGTTCTGCGTGGTTCATTATATATGACCGAGCGAGTTATCGATATTCAATGACATTGAATTGAAAATTTCCAAAGTTTATTAAGGATTGTTGAATGAGTTGTAAGAAAGAAATTGACCCCAAACGAAAGAGGGCGGGATGATAAATTATCCCCCTGCCCAAGAAAGGGGAAACTACAAGAAAGTCCTTCAATCTAAACTAATAAACCCATCGGCAGGTGAAATAGTCTATGAAATTGTAAACTCCAAGCAATGAGATAAGACCAGGACTTTGACCATGTGCCTGTCTAGAAAGAAAATCAACCGTATATAAACAGGTATAGTTATAGAAAAATCCTGGTGACAGTGTTCAAAGAAATTTTTAGTTGAATTGATTTAGTTTGAAACTCTTATATTCATGCTTCTGTGTGAAGGTGACCAGAGACACAAACTTGGTTGTCTTGCTGATGGAAGTTATAACCCCTTCAGATTCTTAGCATAGTCTATGACTCTATTTGGCCTACAGAACTTTTAGATAGATAAATTCAGAAGGATAATTTTCTTTCATGAAGGTTATATTACATGTCAATCTGGTCAAATTTGATTACCGAAAATGGGATTAAAAAGTAAAAGCATAATAATGTTGACACCTTAGATGTCCACTAGCATACAGATAATGATGTTTAACGCAAGTGATGTGGAGTGGATAGTAAAGCATTTATGGAATACTGGAACTCATGTATTGATAATTATGTGGACTTTTGAGTTTCGACACGGATCTTTTCTTCTTTTCATGGTAATACTTTTACTTTTAACTTTTAAGAATATGGCCAGAAAGGATTAATAATTTATTTCAAGTGAGAAAAAAAAAAGGTGTTTAGGTGGACTGTGGCTCTTGGTGTATATCTATGAAAATTTTCCAGCTATTCGCATTAGCCTTTTCTTGGAGTTTCCAGTCAACTTCCTTTCCTCTATTTTATTGGTATGTGTTGTCTTGCAATATATACGACTTTCACCTTCTATAATGTTATCAATTTTCTTTTTTTTTTTTTTTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGTGGAAACAGAAACATTTCATTGATGAAAGAAATAGGTGATTACAAGAAATAGTGTAACGTAATACTAGTGAAAGTAAAAAGTCGACAGAAAACAATGACAATAGGAAAAGAACCTTTCCAAACCGTCTTTTGAAGTAAACTTATTGAAATTATTTTACTTATTATTGTTGGAAAGCAGACTTTCAATAATTTGTGAGAGAAGTTTTAGATGGCATTGTACACTTCTAATACACATGCCTTCTGGAAACAATTTTTTCCTCATGAGTTTTCTTCTGCTATTTTATTGTTCTCGTATTTTTCTTATAATTTGTGAGAGAAGTTTTAGATGGCATTGTACACTTCTAATACACATTCCTTCTGAAAACAATTTTTTCCTCATGAGTTTTCTTCTGCTATTTTATTGTTCTCGTATTTTTCTTGATGTTTTGTGAAGTCTTTTGGAATCTCATTATGTCGAGATTTTAAGAAGCCTTGTGTAGGAGGTTATTGCAATATCAAATCCTTGGAATTCATTTTCTTGAGCACCTATGAGCGTCCAAATGCTGCTTCCATTGAGTTGCTTTCTTAAAAAAATATATTTGCAGATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAATTGCATTTCTTGTTGCCTAATCTCCAGCCAAGTCCAATAAGCCTTTTAATCTTGTTGCTTCACTTATCAACCCATGGCAGTGTTAGTAGCTAAAGACCGATTAACAAAAAGACCCAAAGGTTATGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTTGCTCTGGAAAATATGGATTGCAAGGTTAAACTTCACCTAGTTCTGTATTTTCTAGATAAGGTAACTCATGCTTGAAAGTTAATGTAGTTTCTGTGTCTCTCAAAACCAGAAATTTGATGGAAGGATGATCTATGTGGAACTCGCAAAACCTGGTAGTGATTCCTTTGGAGGATATCCAAGAACCTCCGGACCCCCAGAAGAGCGGCCTAAAGTGGAGCTAGAAGAGGTGGAAGATTGTTGGTATTGATCTTCTTCTTACTAAGATACACAATATATAGGACACCGATGGCTTTAACAGTTAATGATAGTTGTGCCCAATGAGATTCAGATCAATCCCAAAGAATCTGTGAGTGCTGAAGTGTTTTCTAAGATGGATTAATTACATTTATTTTCATAGTTTCAAGCTTTAGATGCTGATGCCATTCTGCAACTCTTCTCCTGTATTTTGTTACTGGAACAGATATCTATTTGTAAGTACACTGTTTATGACACTTAATGCATCTTCTAGTGCATATTGCTTTATGTAGCTTTGCAATTGAGATTATGGAAAATGCGGAAATTCG

mRNA sequence

ATCAAAATTGTTAGGGGCTATGAAAATAAGAAACCGCGAATTTGGGGTTTTGAGGAACGAACGAACGAACGAAGCTCCACGGCGTCGACTGGGCAGATTTGAGCTCCAACATGTGGGCGGCCACCGTCTCCTTCCCTTCAATTTCAAATCTTCGGGGACCCATTCTTCTGAATAATCGATTGGACGGTTCAAAGCGCCTATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTAGTAGCTAAAGACCGATTAACAAAAAGACCCAAAGGTTATGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTTGCTCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGATGATCTATGTGGAACTCGCAAAACCTGGTAGTGATTCCTTTGGAGGATATCCAAGAACCTCCGGACCCCCAGAAGAGCGGCCTAAAGTGGAGCTAGAAGAGGTGGAAGATTGTTGGTATTGATCTTCTTCTTACTAAGATACACAATATATAGGACACCGATGGCTTTAACAGTTAATGATAGTTGTGCCCAATGAGATTCAGATCAATCCCAAAGAATCTGTGAGTGCTGAAGTGTTTTCTAAGATGGATTAATTACATTTATTTTCATAGTTTCAAGCTTTAGATGCTGATGCCATTCTGCAACTCTTCTCCTGTATTTTGTTACTGGAACAGATATCTATTTGTAAGTACACTGTTTATGACACTTAATGCATCTTCTAGTGCATATTGCTTTATGTAGCTTTGCAATTGAGATTATGGAAAATGCGGAAATTCG

Coding sequence (CDS)

ATGTGGGCGGCCACCGTCTCCTTCCCTTCAATTTCAAATCTTCGGGGACCCATTCTTCTGAATAATCGATTGGACGGTTCAAAGCGCCTATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTAGTAGCTAAAGACCGATTAACAAAAAGACCCAAAGGTTATGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTTGCTCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGATGATCTATGTGGAACTCGCAAAACCTGGTAGTGATTCCTTTGGAGGATATCCAAGAACCTCCGGACCCCCAGAAGAGCGGCCTAAAGTGGAGCTAGAAGAGGTGGAAGATTGTTGGTATTGA

Protein sequence

MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY

Homology

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BLAST of ClCG01G025560 vs. Swiss-Prot
Match: RBG4_ARATH (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLA 102
           ++S+L V  L + T++S L++ F++FGE+ E  V  DR T R +G+ F+ ++C+D A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 LENMDCKKFDGRMIYVELAKPGS----DSFGG 131
           ++ MD K+ +GR I V LA   S     SFGG
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of ClCG01G025560 vs. Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-12
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALEN 105
           +L +  L + TNE  L++ FS +G+I+EV+V KDR TKR +G+ F+ +   DDA  A+  
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 106 MDCKKFDGRMIYVELA-KPGSDSFGGY 132
           M+ K  DGR I V+ A K   D  GGY
Sbjct: 66  MNGKAVDGRQIRVDQAGKSSGDRRGGY 92

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BLAST of ClCG01G025560 vs. Swiss-Prot
Match: MRD1_ASPFU (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mrd1 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.3e-12
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLA 102
           L+SRL VRNLPY  +ES L+  FS FG+I E+ VA D  +   KG+A++QY   D A+ A
Sbjct: 299 LSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358

Query: 103 LENMDCKKFDGRMIYV 119
            + +D K F GR++++
Sbjct: 359 YKELDGKHFQGRLMHI 374

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BLAST of ClCG01G025560 vs. Swiss-Prot
Match: MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLAL 103
           + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419

Query: 104 ENMDCKKFDGRMIYV 119
            +MD K F GR+I+V
Sbjct: 420 NDMDGKVFQGRLIHV 434

HSP 2 Score: 50.1 bits (118), Expect = 2.6e-05
Identity = 32/102 (31.37%), Postives = 50/102 (49.02%), Query Frame = 1


Query: 47  LMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 106
           L+V+N+P+ T E  L E FS FGE++ V+++  R        A I+Y   ++A +  +N+
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRVVLSPART------IALIEYIHPNEAKVGFKNL 614

Query: 107 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEE 149
              KF    +Y+E A        G  +   PP+E  K E  E
Sbjct: 615 AYSKFHHVPLYLEWAPE------GVFKLPAPPKEIKKSEKSE 644

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BLAST of ClCG01G025560 vs. Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-11
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALEN 105
           +L V  L + TNE  L++ FS +G+I+EV+V KDR T+R +G+ F+ +   DDA  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 106 MDCKKFDGRMIYVELAKPGSDS 128
           M+ K  DGR I V+ A   SD+
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDN 88

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BLAST of ClCG01G025560 vs. TrEMBL
Match: A0A0A0KL21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.0e-69
Identity = 132/158 (83.54%), Postives = 139/158 (87.97%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVSFPS+SNLRGPI  NNRL  S R+SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEL 120
           LQEEFSNFGEIAEVL+AKDR TKRPKGYAFIQYTCQDDAMLALE MDCK FDGRMIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSDSFGGYPRTSGPPEERP----KVELEEVEDCWY 155
           A PGS SFGGYPR SGPP+ERP     V+ E+V DCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

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BLAST of ClCG01G025560 vs. TrEMBL
Match: W9RS49_9ROSA (Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004913 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.2e-47
Identity = 100/160 (62.50%), Postives = 125/160 (78.12%), Query Frame = 1


Query: 1   MWAA--TVSFPSISN---LRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYS 60
           MWA   T+SFP  +N   +R PIL  NR + +   SL LRASFFDYPLASR++VRNLPYS
Sbjct: 1   MWATPTTISFPPSANPVRIRIPILRTNRTEFN---SLKLRASFFDYPLASRIIVRNLPYS 60

Query: 61  TNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRM 120
           T+E  L E FSNFG+IAEV + KD++T+R KG+AFIQ+T QDDAMLA+ENMD +  DGR+
Sbjct: 61  TSERSLLENFSNFGQIAEVKLIKDKMTRRSKGFAFIQFTSQDDAMLAIENMDHQNLDGRL 120

Query: 121 IYVELAKPGSDSFGGYPRTSGPPEERPKVE-LEEVEDCWY 155
           IYVE+AKPG D+FGGY RTSGPP+++  ++ LEE  DCWY
Sbjct: 121 IYVEIAKPGKDAFGGYLRTSGPPKQQQHLQVLEEAADCWY 157

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BLAST of ClCG01G025560 vs. TrEMBL
Match: V4TN06_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016768mg PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.8e-45
Identity = 93/157 (59.24%), Postives = 118/157 (75.16%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLN---NRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTN 60
           MWAA  +  +  +   P+  N   NR +   R + NLRAS  +YPLASR+MVRNLP++T+
Sbjct: 45  MWAAAAAAAATVSYPQPMFANSLTNRENPCFR-TFNLRASLSNYPLASRIMVRNLPFTTH 104

Query: 61  ESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIY 120
           E  LQ+EFS FGE+AEV + KD +TK+ KGYAFIQYT QDDA+LALE+MD K  DGR+IY
Sbjct: 105 EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 164

Query: 121 VELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           V++AKPG D FGGYPRTSGPP+++P  E +EV DCWY
Sbjct: 165 VDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEVADCWY 200

[Close]

BLAST of ClCG01G025560 vs. TrEMBL
Match: A0A067GF61_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031755mg PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.8e-45
Identity = 96/157 (61.15%), Postives = 118/157 (75.16%), Query Frame = 1


Query: 1   MWAA---TVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTN 60
           MWAA   TVS+P          L NR +   R + NLRAS  +YPLASR+MVRNLP++T+
Sbjct: 1   MWAAAAATVSYPQPMFANS---LTNRENPCFR-TFNLRASLSNYPLASRIMVRNLPFTTH 60

Query: 61  ESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIY 120
           E  LQ+EFS FGE+AEV + KD +TK+ KGYAFIQYT QDDA+LALE+MD K  DGR+IY
Sbjct: 61  EHTLQKEFSAFGEVAEVKLVKDEITKKSKGYAFIQYTSQDDALLALESMDHKNLDGRLIY 120

Query: 121 VELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           V++AKPG D FGGYPRTSGPP+++P  E +EV DCWY
Sbjct: 121 VDIAKPGKDRFGGYPRTSGPPKQQPLSEQDEVADCWY 153

[Close]

BLAST of ClCG01G025560 vs. TrEMBL
Match: M5WVL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012726mg PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 96/162 (59.26%), Postives = 124/162 (76.54%), Query Frame = 1


Query: 1   MWAATVSFPS--------ISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNL 60
           MWAA +S  S        I++LR  +  +NR  GSK  SL LRASFFDYPLAS+++V+N+
Sbjct: 1   MWAAGISLSSPFYAYPKPINSLRSSV--SNRT-GSK--SLKLRASFFDYPLASKILVKNI 60

Query: 61  PYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFD 120
           PYST+E+ LQE+FSNFG+IAEV + KD  ++R KGYA+IQYT QDDAMLALENMD +  D
Sbjct: 61  PYSTSENSLQEKFSNFGQIAEVKLVKDETSRRSKGYAYIQYTSQDDAMLALENMDHQNLD 120

Query: 121 GRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           GR+IYVE+A+PG D++G YP+TSGPP++    + EEV DCWY
Sbjct: 121 GRIIYVEVARPGKDAYGEYPKTSGPPKKLNLQQQEEVSDCWY 157

[Close]

BLAST of ClCG01G025560 vs. TAIR10
Match: AT4G20030.1 (AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41
Identity = 85/158 (53.80%), Postives = 109/158 (68.99%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSL-NLRASFFDYPLASRLMVRNLPYSTNES 60
           MW+AT+SFPS       +  ++ L   + L    ++AS F+YPLAS++MVRNLP+ST+E 
Sbjct: 1   MWSATLSFPSF------VASSSSLPNYRNLRFPKIKASLFNYPLASKIMVRNLPFSTSED 60

Query: 61  RLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVE 120
            L+ EFS FGEIAEV + KD   KR KGYAFIQ+T QDDA LA+E MD + ++GRMIY++
Sbjct: 61  FLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYID 120

Query: 121 LAKPGSDSFGGYPRTSGPPEERPKVE---LEEVEDCWY 155
           +AKPG   F G PRTSGPPE+  + E    +EV DCWY
Sbjct: 121 IAKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152

[Close]

BLAST of ClCG01G025560 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALE 104
           ++L V  L + T E  L++ F  FG +  + +  D++  RPKG+AF++Y  +++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGP-PEERPK 144
            M  K  DGR+I+VE AK  SD     PR   P P+ +P+
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPR 176

[Close]

BLAST of ClCG01G025560 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 73.9 bits (180), Expect = 9.4e-14
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLA 102
           ++S+L V  L + T++S L++ F++FGE+ E  V  DR T R +G+ F+ ++C+D A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 LENMDCKKFDGRMIYVELAKPGS----DSFGG 131
           ++ MD K+ +GR I V LA   S     SFGG
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of ClCG01G025560 vs. TAIR10
Match: AT4G19610.1 (AT4G19610.1 nucleotide binding;nucleic acid binding;RNA binding)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 1


Query: 24  LDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTK 83
           ++G  +++   +A   D     RL VRNLPY+  E  L E FS FG+I+EV +  D+ TK
Sbjct: 273 VEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETK 332

Query: 84  RPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPE 140
           R +G A+I Y   + A  A+E +D   F GR++++  AK    S      TS  P+
Sbjct: 333 RSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPK 388

HSP 2 Score: 39.7 bits (91), Expect = 2.0e-03
Identity = 29/106 (27.36%), Postives = 45/106 (42.45%), Query Frame = 1


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALE 104
           SR+ V+NLP    E +L++ FS  GEI +  + +     + + + FI +    +A  A++
Sbjct: 2   SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSN-DGKSRQFGFIGFRSAQEAQQAIK 61

Query: 105 NMDCKKFDGRMIYVELAKPGSDSFGGYP--RTSGPPEERPKVELEE 149
             +       +I VE+A    D     P  R S   EE  K    E
Sbjct: 62  YFNNTYLGTSLIIVEIAHKVGDENAPRPWSRLSHKKEEEAKKSSSE 106

[Close]

BLAST of ClCG01G025560 vs. TAIR10
Match: AT5G08695.1 (AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-13
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLAL 103
           A RL V  LPYST E  L E FS FG+I+EV +  D+ T+  +G AF+ Y   + A +A+
Sbjct: 226 AGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285

Query: 104 ENMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEE 149
           + +D   F GR +++  AKP + S      +S  P+   K   E+
Sbjct: 286 DKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREEQ 330

HSP 2 Score: 32.0 bits (71), Expect = 4.1e-01
Identity = 23/79 (29.11%), Postives = 37/79 (46.84%), Query Frame = 1


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALE 104
           SR++V+N+P    E +L+  FS  GEI +V + K     R + +A+I +  +  A  A+ 
Sbjct: 4   SRIIVKNVPKYVTEDQLRGIFSEKGEITDVKL-KRLSDGRSRQFAYIGFRSEQKAQDAIT 63

Query: 105 NMDCKKFDGRMIYVELAKP 124
             +        I V +A P
Sbjct: 64  YFNKNFKHSHQISVLVADP 81

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: gi|659077977|ref|XP_008439484.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 3.0e-70
Identity = 132/154 (85.71%), Postives = 138/154 (89.61%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PSISNLRGP+  NN L  S R SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEL 120
           LQEEFSNFGEIAEVL+AKDR TKRPKGYAFIQYTCQDDAMLALENMDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           AKPGS SFGGYPRTSGPP+ERP VE E++ DCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: gi|449433509|ref|XP_004134540.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 4.3e-69
Identity = 132/158 (83.54%), Postives = 139/158 (87.97%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVSFPS+SNLRGPI  NNRL  S R+SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEL 120
           LQEEFSNFGEIAEVL+AKDR TKRPKGYAFIQYTCQDDAMLALE MDCK FDGRMIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSDSFGGYPRTSGPPEERP----KVELEEVEDCWY 155
           A PGS SFGGYPR SGPP+ERP     V+ E+V DCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: gi|657982477|ref|XP_008383279.1| (PREDICTED: putative RNA-binding protein 3 [Malus domestica])

HSP 1 Score: 206.8 bits (525), Expect = 2.6e-50
Identity = 99/154 (64.29%), Postives = 128/154 (83.12%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWAATVSFP  ++ + PI L+NR D SK L L +RASFFDYPLAS+++V+N+PYST+E+ 
Sbjct: 1   MWAATVSFPCYAHPK-PIHLSNRTD-SKPLKLQMRASFFDYPLASKILVKNIPYSTSENS 60

Query: 61  LQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEL 120
           LQ++FS+FG+IAEV + KD  ++R KG+AFIQYTCQDDAMLALENMD +  DGR+IYVEL
Sbjct: 61  LQQKFSSFGQIAEVKLVKDESSRRSKGFAFIQYTCQDDAMLALENMDRQNLDGRIIYVEL 120

Query: 121 AKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           A+PG D++G YPRTSGPP+++   + EEV DCWY
Sbjct: 121 ARPGKDAYGEYPRTSGPPKKQNLPQQEEVSDCWY 152

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: gi|694326152|ref|XP_009353996.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 202.6 bits (514), Expect = 5.0e-49
Identity = 98/154 (63.64%), Postives = 127/154 (82.47%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWAATVSFP  ++ + PI L+NR D SK L L +R+SFFDYPLAS+++V+N+PYST+E+ 
Sbjct: 1   MWAATVSFPCYAHPK-PIHLSNRTD-SKPLKLQVRSSFFDYPLASKILVKNIPYSTSENS 60

Query: 61  LQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEL 120
           LQ++FS+FG+IAEV + KD  ++R KG+AFIQYT QDDAMLALENMD K  DGR+IYVEL
Sbjct: 61  LQQKFSSFGQIAEVKLVKDESSRRSKGFAFIQYTSQDDAMLALENMDRKNLDGRIIYVEL 120

Query: 121 AKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           A+PG D++G YPRTSGPP+++   + EEV DCWY
Sbjct: 121 ARPGKDAYGEYPRTSGPPKKQNLPQQEEVADCWY 152

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: gi|694425081|ref|XP_009340294.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 196.1 bits (497), Expect = 4.7e-47
Identity = 96/154 (62.34%), Postives = 124/154 (80.52%), Query Frame = 1


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWAATVSFP  ++ + PI L+NR D SK L L +RASFFDYPLAS+++V+N+PYS  E+ 
Sbjct: 1   MWAATVSFPCYAHPK-PIHLSNRTD-SKPLKLQVRASFFDYPLASKILVKNIPYSICENS 60

Query: 61  LQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEL 120
           LQ++FS+FG+IAEV + KD  ++R KG+AFIQYT QDDAMLALENMD +   GR+IYVEL
Sbjct: 61  LQQKFSSFGQIAEVKLVKDESSRRSKGFAFIQYTSQDDAMLALENMDRQNLGGRIIYVEL 120

Query: 121 AKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 155
           A+PG D++G YPRTSGPP+++   + EEV DCWY
Sbjct: 121 ARPGKDAYGEYPRTSGPPKKQNLPQQEEVSDCWY 152

The following BLAST results are available for this feature:

BLAST of ClCG01G025560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG4_ARATH	1.7e-12	40.22	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
CIRBB_XENLA	4.9e-12	43.68	Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1	[more]
MRD1_ASPFU	8.3e-12	46.05	Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain...	[more]
MRD1_DICDI	2.4e-11	46.67	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=...	[more]
CIRBP_PONAB	4.1e-11	42.68	Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1	[more]

BLAST of ClCG01G025560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL21_CUCSA	3.0e-69	83.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526430 PE=4 SV=1	[more]
W9RS49_9ROSA	4.2e-47	62.50	Glycine-rich RNA-binding protein 2 OS=Morus notabilis GN=L484_004913 PE=4 SV=1	[more]
V4TN06_9ROSI	8.8e-45	59.24	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016768mg PE=4 SV=1	[more]
A0A067GF61_CITSI	8.8e-45	61.15	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031755mg PE=4 SV=1	[more]
M5WVL0_PRUPE	1.2e-44	59.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012726mg PE=4 SV=1	[more]

BLAST of ClCG01G025560 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20030.1	1.4e-41	53.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.9e-14	37.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	9.4e-14	40.22	glycine-rich RNA-binding protein 4	[more]
AT4G19610.1	1.2e-13	36.21	nucleotide binding;nucleic acid binding;RNA binding	[more]
AT5G08695.1	2.7e-13	37.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of ClCG01G025560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077977\|ref\|XP_008439484.1\|	3.0e-70	85.71	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
gi\|449433509\|ref\|XP_004134540.1\|	4.3e-69	83.54	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]	[more]
gi\|657982477\|ref\|XP_008383279.1\|	2.6e-50	64.29	PREDICTED: putative RNA-binding protein 3 [Malus domestica]	[more]
gi\|694326152\|ref\|XP_009353996.1\|	5.0e-49	63.64	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x brets...	[more]
gi\|694425081\|ref\|XP_009340294.1\|	4.7e-47	62.34	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Pyrus x brets...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G025560.1	ClCG01G025560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..116 score: 5.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..119 score: 1.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 45..123 score: 18
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 44..126 score: 3.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 45..136 score: 2.42
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 46..123 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G025560	Csa6G526430	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G025560	MELO3C007029	Melon (DHL92) v3.5.1	mewcgB515
ClCG01G025560	Cla97C01G025710	Watermelon (97103) v2	wcgwmbB089
ClCG01G025560	CSPI06G37320	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G025560	Cucsa.048700	Cucumber (Gy14) v1	cgywcgB022
ClCG01G025560	CmaCh03G014830	Cucurbita maxima (Rimu)	cmawcgB576
ClCG01G025560	CmoCh03G014830	Cucurbita moschata (Rifu)	cmowcgB573
ClCG01G025560	Lsi01G000400	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G025560	Cp4.1LG10g06790	Cucurbita pepo (Zucchini)	cpewcgB062
ClCG01G025560	CsGy6G036680	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G025560	MELO3C007029.2	Melon (DHL92) v3.6.1	medwcgB510
ClCG01G025560	Carg26324	Silver-seed gourd	carwcgB0831
ClCG01G025560	CsaV3_6G052810	Cucumber (Chinese Long) v3	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G025560	Wax gourd	wcgwgoB224
ClCG01G025560	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G025560	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G025560	Watermelon (97103) v1	wcgwmB141
ClCG01G025560	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G025560	Silver-seed gourd	carwcgB0707