MELO3C006787.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006787.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	splicing factor 3B subunit 4
Location	chr06 : 5963345 .. 5969182 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGAAGATAGCGCCGGGAGTCGGAGCCAATCTGCTCGGCCAGCACGCCCCCGAGAGGAATCAAGACGCCACTGCCTATGTCGGAAATCTAGATCCCCAGGATTTTTTTTTTTTTTCCCCTTATTTCTCCTTTCTGAATCAGCTAATTCCCCTTCAAAACCCTTCGTCTGGGGTTTCCCCGTTTTTCTAATTTCATTTTTATCATACCCTTTTACTGTTTTTTGTGCGCCCTGCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGTCCAGTTGGTGAGTTCGTTCATTTCTTTTTCCTAATGAACTCTTAGGGTTTTCTGAAAATTCTGTTGAAGTTATTTTTGTTCCCTTCTTATTCTTGGTTGGATTATTTCCTTAAACAAATTGTACCTACTTCTTGTTTTGTAGTTAATGTGTATGTTCCTAAGGATAGAGTCACTAATTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGCGAGGAAGATGCAGATTATGTATGTTATGTTGTGGACTCTTTTGCCTTTTTATCCTCATAGTTATATGCTTTCGGAAGTTATCTTGATTTTCCATTCTCAATGGTTTTGCAGGCAATCAAGGTGCTAAATATGATCAAGCTCTATGGGAAGCCAATTCGCGTTAACAAGGTATGTAGGAAACTTTTTCGTTCAACTGCACTATAATGTGGTCTGATGTACTGTTCAGCAAAGGAGGATGGTATTTTATCTTCTTATAAAAATGGATATTTAACTCTTATTATGTGCATTGCATATTCCAGGCGTCTCAAGACAAAAAGAGTTTGGATGTGGGGGCAAATCTCTTCATAGGAAACCTAGACCCGGTAAGTCTTTATTTTATTATGATTATATCTGGAAAACTTGCAAGACTGATGTTTTAAAGATTGAAACCAAACCATGGTGTTTCTTTCAGGATGTTGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATCGTGACGAATCCTAAGGTTATTACTTTTTCCATAAACCCATCACTCTCATATGTTTTATTTATCATAGGAGATTAGAGTTCATTTTCGAGCAAACTACTCACTAGTAAATTATAGTTCATTTTCAAGTCAACTACTTACTCTTTAAAGAAGTGATTTAATGACAATTTAACGTAGTGAAGGCCTTTCATGGAAATATTAAACAATCACAATTGCTTTTTAGTATGTTTTACCCGTATACAATGTTTACGGTTGTTTATTTTTTCTGGAATATGCTGAACATCATTGGTCTCTATTCTGTATTTTCTTGATGGGAGTTGTAAGTAAACTTTTAGGAAGTTTGTGTTATTTGTGGTTTTTATTAATGAATTTCTCTTTAGTTTGCAATGAGAAAATTCATTCCTATACGATATTGCCTCTTTGGCCAGAAAGTCAATCTAGATTATGAAATAGTATAACATTCCTTTTCTTATTTTTTTTGTTTTATCCCTCTCTCCTTTAGTTGTAGTGTATTGACATGTCTCTTCTATTTCATGTTTCAATCATAATGGTGGTTGAACAGCCAGTTTATGATTTCTTTTGTCTGTATTCATTGTCTTTTTTAATAATATATAATTTCTATCACTTCCTTAATTGTTTTCTTGTCTTACCATTACTTAGAATTTCTTTTTACTCCAAGGATTTTTTAGCTGGGTTTTCTTCCACGTGGGTTACTCCACCTCTCTATACTATCATGTTCTTTATGGAAATGGGACTTGTTATGTGACCTTACTTTATATTTACTGTTACTCTCCTGAAGTGTGTAGTTGGGTACGTTGGATCAGGAATTTGTTAGGACTTTAAGGGGCTAATAACATCATGGCCGTTGGAATGCTTAGACTTCTTGGCTACTGAATTTTGCTATCAAATCTGTTTCCTACCATGTTTCAAGAGCAATATGAACCAAAGTTTTGAACTTTTGAGTGCATAAGGCACCACATTATTCCCTTTACCATCCTTTTAAATAAAAGATCCCTTCTATTTAGCATGTGGAATACAAAATTTCAGTCTAAAGTGGGCACTTGAAAAGTGTTTATATTTTCTTTGTATTAAGCTATTTACCAATGTTTCAATATTCTTTTGCTTGGTTCTTTTGTTGTTTCTCCTTTGTGATCGTTTGTAGGTCGTTTTCACATTTGTATTGTCCGAGTTCATCTTTGTTTAGAGCATATTATCCTTTTCTTATTTTTCTCTTAGTATAATACTCTTGTACTTTAAGCATTAGTCTCATTTATTATTATTGAAAGCAATTAACAACAACTCGAGATTTACGTGGAAACCCGAGAACCGGGAGAAAAACCACGATACTTTAGTTTTTATTATTTTTCTTATGAACAAAAACAATAGGTACAAAGGGAGAATAAATAGAGTACAATAGGAATAAGAAAGGAAAAGATTTAGGAAATATTTAGGAAATAAAATCTTATATTTTATTCTTTCCAAAAATACTAATTCTAACACTCCCCCTCAAGTTGGGAGGTAAATATCAAactcagggttgaacgatttcgtttccagcttcacaccagcctcttcggggaaccattcttgtagtcgtATCTGTTGGCTTGAAGGAATATACGGAATGCATATGCTTCCACTGTCAAGTCTTTATTTGATGAAATGCCGATCAATCTCAACATGTTTAGTTCTATCATGTTGAACGGGGTTGTTAGCAATATTAATAGCGGCTTTATTATCACAAAAAAGCTTCAATGGTGTCTCACATTCCTGATGAAGATCTGACAAGACTTTCTGGAGCCAAATTTCCTCACATATTCCCAGACTCATAGCTCTGTATTCAGCCTCAGCACTGCTCCTGGCCACAACACTTTGCTTCTTACTCCTCCAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGAAGATTCGCTCGCTTCAATGTCCGATCTGTTTTGGGGTTGATCAATTCCGTTACCAGAAAACAGCGGTTGTTGTAAAGAGTGAACGTACAGCTGCTGCTTACTGTACTGATTTGACAGATTTACGGTTGAGGGTTGCTGTCCGGAGCTCGTAGACGGCGCGTGAGGATGCGGATGGCCGGAAGGGTTTGACGGTTGGACATCCGACGGCGCGTAGAAGGGAACGGGATGGGCGGTGACGTGAAACGGCGGCGGCGCGTGGGCCCACGCGCCGGACACGAGCGGCGCGTGAGTCGTCTTCTGGTCAGACGGCGGCGCGTACGGCTTCGGAACCACTCCCGTTGGGTAGATCGGCGGTTTCTGTAGGTTCTGGAGCAGTTTCTCCATGGGCGTCCACGGCGGCGGCGGCGACGGGTTCAGTTTCGATTTGGGTTTCTCCTAGGTTATTTTCTAGGGTTTCGTTATTGCTTTTCTCTGATACCATATTGAAAGCAATTAACAACAACCCGAGATTTACGTGGAAACCCGAGAACCGGGAGAAAAACCACGATACTTTAGTTTTTATTATTTTTCTTATGAACAAAAACAATAGGTACAAAGGGAGAATAAATAGAGTACGAATAAGAAAGGAAAAGATTTAGGAAATATTTAGGAAATAAAATCTTATATTTTATTCTTTCCAAAAATACTAATTCTAACAATTATTAATAAAGAGTTTCGTCTTTGTTTCAAAAAAATAAAATAAAAGGCCCCATCTTGTTGTATGCCCTATTTATCCTCTTTGGTTCTTTCTCATCTGGTGTGTACTTGCTACTGAGCTCTTTTTTGGGATGTATTAGAACTGTTTTGCATAGATCTGAGTCTTAATACATTTATTTTCCGACTTGAAATGTCTTTCTTTTTTTATTAACCAGATTATGAGGGATCCAGATACAGGAAATTCGCGTGGGTTTGGTTTTATTAGCTATGACTCCTTTGAGGCATCTGATGCAGCAATTGAGGTGTGTTATTGCTTTGTTTATCGGCAATCATTTCAATCCCGCAACATTTGCTGTCTTTATATATTATATATGAAGTTTCAAATGCCAACAAGATTTAAAATAATTTGTCCACTTGGTAACTCAAACCTCGAAAAAGAATGAAGTAACCTTATCTTGACACAATTTTTTGCTACTTTTGCAATAGGCAATGAATGGTCAGTATCTCTGTAATCGTCAAATAACAGTTTCGTATGCCTATAAGAAAGATACCAAGGGAGAGCGGCACGGCACACCTGCAGGTAAGAGTTGTTGCTGATCTTTGAAAATTTGTGAATTTTTTTTAGGTTAGGAACAGGATTCAAACTTTTGGCGACTAAGATGAGAAGTTTATCATCATTGATTAATTTACCTCTGGTGTTATCTTTTTCTATGTGTAGAGAGAGTATTGGCTGCTAGCAATCCCCAAAAGAGTAGGCCTCACACTTTGTTCGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAATGGTGCGATTGGAGCTCCGGTGCCACCGCGCCCCTTTGCTAACGGTGCAATCACTCCCAACCCTATTCCTGCAATACGTCCTTCGCCACCACAAGGGGTGGCTTTCCCCCCTATGCCAATGGCCGGACAACCACCAGCCTGGCAAGGTCAGCCGCAGCAACCAGGTCATATGATGCCGGGTTCCATGATTCCACCACCAGTTCAGCAGTTCCGGCCACCTCCCCCAAACATGCCAATGCCACCACCGCAGGCTCAAGCACATTCCATGTCTATCCCTCCACCAATGGGAATGGGAGGAGCACAGCCACCGCTTTGGCGACCACCGCCACCGCCAATGCAGCAGCAGCAGCCTGGAAGGCCACCTATGCAAATGTCATCAATGCCCCCGCCGCCACCTCCAAATCATATTCCACCACCTCTACCTTCTTCTGGCTGATACATCAATATATTACTAGCCATGAAAATGAGATCATGTTTATTTCCTTTTTGTGATAATATTCAGTAGGTTGTCATATTGTCATACAAATTGTTAACACTTCAATCCGAGAAATTAGCAGGAGGAAATTCGGCATTTTTGCTACGTCTA

mRNA sequence

ATGACGACGAAGATAGCGCCGGGAGTCGGAGCCAATCTGCTCGGCCAGCACGCCCCCGAGAGGAATCAAGACGCCACTGCCTATGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGTCCAGTTGTTAATGTGTATGTTCCTAAGGATAGAGTCACTAATTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGCGAGGAAGATGCAGATTATGCAATCAAGGTGCTAAATATGATCAAGCTCTATGGGAAGCCAATTCGCGTTAACAAGGCGTCTCAAGACAAAAAGAGTTTGGATGTGGGGGCAAATCTCTTCATAGGAAACCTAGACCCGGATGTTGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATCGTGACGAATCCTAAGATTATGAGGGATCCAGATACAGGAAATTCGCGTGGGTTTGGTTTTATTAGCTATGACTCCTTTGAGGCATCTGATGCAGCAATTGAGGCAATGAATGGTCAGTATCTCTGTAATCGTCAAATAACAGTTTCGTATGCCTATAAGAAAGATACCAAGGGAGAGCGGCACGGCACACCTGCAGAGAGAGTATTGGCTGCTAGCAATCCCCAAAAGAGTAGGCCTCACACTTTGTTCGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAATGGTGCGATTGGAGCTCCGGTGCCACCGCGCCCCTTTGCTAACGGTGCAATCACTCCCAACCCTATTCCTGCAATACGTCCTTCGCCACCACAAGGGGTGGCTTTCCCCCCTATGCCAATGGCCGGACAACCACCAGCCTGGCAAGGTCAGCCGCAGCAACCAGGTCATATGATGCCGGGTTCCATGATTCCACCACCAGTTCAGCAGTTCCGGCCACCTCCCCCAAACATGCCAATGCCACCACCGCAGGCTCAAGCACATTCCATGTCTATCCCTCCACCAATGGGAATGGGAGGAGCACAGCCACCGCTTTGGCGACCACCGCCACCGCCAATGCAGCAGCAGCAGCCTGGAAGGCCACCTATGCAAATGTCATCAATGCCCCCGCCGCCACCTCCAAATCATATTCCACCACCTCTACCTTCTTCTGGCTGATACATCAATATATTACTAGCCATGAAAATGAGATCATGTTTATTTCCTTTTTGTGATAATATTCAGTAGGTTGTCATATTGTCATACAAATTGTTAACACTTCAATCCGAGAAATTAGCAGGAGGAAATTCGGCATTTTTGCTACGTCTA

Coding sequence (CDS)

ATGACGACGAAGATAGCGCCGGGAGTCGGAGCCAATCTGCTCGGCCAGCACGCCCCCGAGAGGAATCAAGACGCCACTGCCTATGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGTCCAGTTGTTAATGTGTATGTTCCTAAGGATAGAGTCACTAATTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGCGAGGAAGATGCAGATTATGCAATCAAGGTGCTAAATATGATCAAGCTCTATGGGAAGCCAATTCGCGTTAACAAGGCGTCTCAAGACAAAAAGAGTTTGGATGTGGGGGCAAATCTCTTCATAGGAAACCTAGACCCGGATGTTGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATCGTGACGAATCCTAAGATTATGAGGGATCCAGATACAGGAAATTCGCGTGGGTTTGGTTTTATTAGCTATGACTCCTTTGAGGCATCTGATGCAGCAATTGAGGCAATGAATGGTCAGTATCTCTGTAATCGTCAAATAACAGTTTCGTATGCCTATAAGAAAGATACCAAGGGAGAGCGGCACGGCACACCTGCAGAGAGAGTATTGGCTGCTAGCAATCCCCAAAAGAGTAGGCCTCACACTTTGTTCGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAATGGTGCGATTGGAGCTCCGGTGCCACCGCGCCCCTTTGCTAACGGTGCAATCACTCCCAACCCTATTCCTGCAATACGTCCTTCGCCACCACAAGGGGTGGCTTTCCCCCCTATGCCAATGGCCGGACAACCACCAGCCTGGCAAGGTCAGCCGCAGCAACCAGGTCATATGATGCCGGGTTCCATGATTCCACCACCAGTTCAGCAGTTCCGGCCACCTCCCCCAAACATGCCAATGCCACCACCGCAGGCTCAAGCACATTCCATGTCTATCCCTCCACCAATGGGAATGGGAGGAGCACAGCCACCGCTTTGGCGACCACCGCCACCGCCAATGCAGCAGCAGCAGCCTGGAAGGCCACCTATGCAAATGTCATCAATGCCCCCGCCGCCACCTCCAAATCATATTCCACCACCTCTACCTTCTTCTGGCTGA

Protein sequence

MTTKIAPGVGANLLGQHAPERNQDATAYVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGAPVPPRPFANGAITPNPIPAIRPSPPQGVAFPPMPMAGQPPAWQGQPQQPGHMMPGSMIPPPVQQFRPPPPNMPMPPPQAQAHSMSIPPPMGMGGAQPPLWRPPPPPMQQQQPGRPPMQMSSMPPPPPPNHIPPPLPSSG

Homology

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BLAST of MELO3C006787.2 vs. NCBI nr
Match: XP_004147654.1 (PREDICTED: splicing factor 3B subunit 4 [Cucumis sativus] >KGN57241.1 hypothetical protein Csa_3G172960 [Cucumis sativus])

HSP 1 Score: 523.5 bits (1347), Expect = 6.0e-145
Identity = 262/269 (97.40%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANGAITPNPIPAIRPSPPQGVA
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. NCBI nr
Match: XP_008439058.1 (PREDICTED: splicing factor 3B subunit 4 [Cucumis melo])

HSP 1 Score: 523.5 bits (1347), Expect = 6.0e-145
Identity = 262/269 (97.40%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANGAITPNPIPAIRPSPPQGVA
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. NCBI nr
Match: XP_022138265.1 (splicing factor 3B subunit 4 [Momordica charantia])

HSP 1 Score: 514.6 bits (1324), Expect = 2.8e-142
Identity = 257/269 (95.54%), Postives = 258/269 (95.91%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG IGA
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGVIGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANG I P+PIPAIRP PPQGVA
Sbjct: 241 PVPPRPFANGTIAPSPIPAIRPPPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. NCBI nr
Match: XP_022955618.1 (splicing factor 3B subunit 4-like [Cucurbita moschata])

HSP 1 Score: 511.5 bits (1316), Expect = 2.4e-141
Identity = 255/269 (94.80%), Postives = 258/269 (95.91%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEE LWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEESLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG+ GA
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGSFGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANGA+ P+PIPAIRP PPQGVA
Sbjct: 241 PVPPRPFANGAMAPSPIPAIRPPPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. NCBI nr
Match: XP_022979818.1 (splicing factor 3B subunit 4-like [Cucurbita maxima])

HSP 1 Score: 509.6 bits (1311), Expect = 8.9e-141
Identity = 254/269 (94.42%), Postives = 257/269 (95.54%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEE LWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEESLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQI VSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG+ GA
Sbjct: 181 NRQIAVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGSFGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANGA+ P+PIPAIRP PPQGVA
Sbjct: 241 PVPPRPFANGAMAPSPIPAIRPPPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. TAIR10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 425.2 bits (1092), Expect = 4.0e-119
Identity = 219/261 (83.91%), Postives = 230/261 (88.12%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYV-------SEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDAT YV       SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQ YGFIE+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASDAAIE+M GQYL 
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGAI 240
           NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHTLFA GPP+     Q NG  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 240

Query: 241 GAPVPPRPFANGAITPNPIPA 253
                PRPFANG++ P PIPA
Sbjct: 241 -----PRPFANGSMQPVPIPA 253

[Close]

BLAST of MELO3C006787.2 vs. TAIR10
Match: AT1G49760.1 (poly(A) binding protein 8)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-28
Identity = 68/172 (39.53%), Postives = 105/172 (61.05%), Query Frame = 0


Query: 24  DATAYVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIK 83
           D  A V++  L+E F QAG VV+V V +D  T    GYG++ + + +DA  A+  LN + 
Sbjct: 51  DLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMA 110

Query: 84  LYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 143
           L G+ IRV  + +D      G  N+FI NLD  +D K L++TFSAFG I+ + K+  DP 
Sbjct: 111 LNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL-SCKVAVDP- 170

Query: 144 TGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS---YAYKKDTKGER 192
           +G S+G+GF+ YD+ EA+  AI+ +NG  L ++Q+ V    +  ++D  GE+
Sbjct: 171 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220

[Close]

BLAST of MELO3C006787.2 vs. TAIR10
Match: AT4G34110.1 (poly(A) binding protein 2)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-27
Identity = 68/152 (44.74%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 29  VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKP 88
           V++  L++ F Q G VV V V +D VT    GYG++ F + +DA  AI+ LN I LYGKP
Sbjct: 47  VTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKP 106

Query: 89  IRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 148
           IRV  + +D      GA N+FI NLD  +D K L+DTFS+FG IV + K+  D  +G S+
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SCKVAVD-SSGQSK 166

Query: 149 GFGFISYDSFEASDAAIEAMNGQYLCNRQITV 180
           G+GF+ Y + E++  AIE +NG  L ++Q+ V
Sbjct: 167 GYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196

[Close]

BLAST of MELO3C006787.2 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-24
Identity = 60/161 (37.27%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 29  VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKP 88
           V++  L++ F +   VV+V V +D  TN   GYG++ + + +DA+ A++ LN   L GK 
Sbjct: 57  VTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKM 116

Query: 89  IRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 148
           IR+  +S+D  +   G  NLF+ NLD  VD K L++ FS  G IV + K+  D   G SR
Sbjct: 117 IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIV-SCKVATD-HMGQSR 176

Query: 149 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 189
           G+GF+ +D+ +++  AIE +NG+ L ++QI V    +K+ +
Sbjct: 177 GYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEER 215

[Close]

BLAST of MELO3C006787.2 vs. TAIR10
Match: AT1G22760.1 (poly(A) binding protein 3)

HSP 1 Score: 109.0 bits (271), Expect = 6.4e-24
Identity = 60/176 (34.09%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 24  DATAYVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIK 83
           D    V+E  L++LF     VV+V V +D+      GY +I F +  DA  A++ LN   
Sbjct: 55  DLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTP 114

Query: 84  LYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 143
           L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG I+ + K+  D  
Sbjct: 115 LFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTIL-SCKVAMDV- 174

Query: 144 TGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 199
           TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  +     TP  R
Sbjct: 175 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227

[Close]

BLAST of MELO3C006787.2 vs. Swiss-Prot
Match: sp|Q15427|SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.1e-88
Identity = 164/228 (71.93%), Postives = 188/228 (82.46%), Query Frame = 0


Query: 20  ERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT Y       VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGAIGAPVPP 238
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234

[Close]

BLAST of MELO3C006787.2 vs. Swiss-Prot
Match: sp|Q8QZY9|SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.1e-88
Identity = 164/228 (71.93%), Postives = 188/228 (82.46%), Query Frame = 0


Query: 20  ERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT Y       VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGAIGAPVPP 238
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234

[Close]

BLAST of MELO3C006787.2 vs. Swiss-Prot
Match: sp|Q6AYL5|SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 2.1e-88
Identity = 164/228 (71.93%), Postives = 188/228 (82.46%), Query Frame = 0


Query: 20  ERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT Y       VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGAIGAPVPP 238
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234

[Close]

BLAST of MELO3C006787.2 vs. Swiss-Prot
Match: sp|Q09442|SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 300.8 bits (769), Expect = 2.1e-80
Identity = 161/255 (63.14%), Postives = 191/255 (74.90%), Query Frame = 0


Query: 20  ERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT Y       VSE +LWEL VQAGPVV+V +PKDRVT  HQG+GF+EF  EEDA
Sbjct: 8   ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK+LNMIKLYGKPI+VNKAS  +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFAS---GPPTLPKVAQP--NGAIGAPVPPRPFANGAI 259
           GT AER+LAA NP   K RPH +F+    G P    +A P  + AI A    RP      
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRP----GY 247

Query: 260 TPNPIPAIRPSPPQG 261
            P P+  +  S  QG
Sbjct: 248 QPPPLMGMAQSGYQG 258

[Close]

BLAST of MELO3C006787.2 vs. Swiss-Prot
Match: sp|O14102|SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 235.7 bits (600), Expect = 8.1e-61
Identity = 120/220 (54.55%), Postives = 161/220 (73.18%), Query Frame = 0


Query: 20  ERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           +RNQDAT Y       V++ +L+EL +QAGPVVN+++P+DRV N H G+GF EF  E+D 
Sbjct: 6   DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 139
           +YA ++LN +KL+GKPIRVN+ASQD+  +  +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66  EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125

Query: 140 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 199
           V  P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 185

Query: 200 HGTPAERVLAASNPQKSRPHTLFASGPPTL-PKVAQPNGA 231
           HG  AER LAA+  +     T  ++ PP   P    P  A
Sbjct: 186 HGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSA 224

[Close]

BLAST of MELO3C006787.2 vs. TrEMBL
Match: tr|A0A1S3AYG3|A0A1S3AYG3_CUCME (splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 4.0e-145
Identity = 262/269 (97.40%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANGAITPNPIPAIRPSPPQGVA
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. TrEMBL
Match: tr|A0A0A0LAZ0|A0A0A0LAZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 4.0e-145
Identity = 262/269 (97.40%), Postives = 262/269 (97.40%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAY       VSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           PVPPRPFANGAITPNPIPAIRPSPPQGVA
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 269

[Close]

BLAST of MELO3C006787.2 vs. TrEMBL
Match: tr|W9R928|W9R928_9ROSA (Splicing factor 3B subunit 4 OS=Morus notabilis OX=981085 GN=L484_014619 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 2.7e-133
Identity = 242/269 (89.96%), Postives = 250/269 (92.94%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYV-------SEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYV       SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNGAIG 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  KSRPHTLFASGPPTLP   Q NG +G
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSKSRPHTLFASGPPTLPNGPQANGTMG 240

Query: 241 APVPPRPFANGAITPNPIPAIRPSPPQGV 262
           APVPPRPFANGA+   PIPA+RP PPQG+
Sbjct: 241 APVPPRPFANGAVASGPIPALRPPPPQGL 269

[Close]

BLAST of MELO3C006787.2 vs. TrEMBL
Match: tr|A0A2P6SFK1|A0A2P6SFK1_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0348441 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.7e-132
Identity = 240/270 (88.89%), Postives = 250/270 (92.59%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAY       VSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDP+TGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNGAIG 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  KSRPHTLFASGPPTLP  +Q NG +G
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTSKSRPHTLFASGPPTLPNGSQANGTMG 240

Query: 241 APVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           APVPPRPFANG + P  IP +RP PPQG+A
Sbjct: 241 APVPPRPFANGGVGPGLIPPLRPQPPQGMA 270

[Close]

BLAST of MELO3C006787.2 vs. TrEMBL
Match: tr|F6GWY0|F6GWY0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01470 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.7e-132
Identity = 240/271 (88.56%), Postives = 250/271 (92.25%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAY-------VSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAY       V+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQ--KSRPHTLFASGPPTLPKVAQPNGAI 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP   KSRPHTLFASGPPTLP V Q NG +
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNVPQANGNM 240

Query: 241 GAPVPPRPFANGAITPNPIPAIRPSPPQGVA 263
           GAP+PPRPFANG + P PIPA+RP PPQ  A
Sbjct: 241 GAPMPPRPFANGVVPPVPIPAMRPPPPQSGA 271

The following BLAST results are available for this feature:

BLAST of MELO3C006787.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147654.1	6.0e-145	97.40	PREDICTED: splicing factor 3B subunit 4 [Cucumis sativus] >KGN57241.1 hypothetic...	[more]
XP_008439058.1	6.0e-145	97.40	PREDICTED: splicing factor 3B subunit 4 [Cucumis melo]	[more]
XP_022138265.1	2.8e-142	95.54	splicing factor 3B subunit 4 [Momordica charantia]	[more]
XP_022955618.1	2.4e-141	94.80	splicing factor 3B subunit 4-like [Cucurbita moschata]	[more]
XP_022979818.1	8.9e-141	94.42	splicing factor 3B subunit 4-like [Cucurbita maxima]	[more]

BLAST of MELO3C006787.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18510.1	4.0e-119	83.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G49760.1	3.3e-28	39.53	poly(A) binding protein 8	[more]
AT4G34110.1	1.2e-27	44.74	poly(A) binding protein 2	[more]
AT2G23350.1	2.9e-24	37.27	poly(A) binding protein 4	[more]
AT1G22760.1	6.4e-24	34.09	poly(A) binding protein 3	[more]

BLAST of MELO3C006787.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q15427\|SF3B4_HUMAN	2.1e-88	71.93	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
sp\|Q8QZY9\|SF3B4_MOUSE	2.1e-88	71.93	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
sp\|Q6AYL5\|SF3B4_RAT	2.1e-88	71.93	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
sp\|Q09442\|SF3B4_CAEEL	2.1e-80	63.14	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
sp\|O14102\|SAP49_SCHPO	8.1e-61	54.55	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of MELO3C006787.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYG3\|A0A1S3AYG3_CUCME	4.0e-145	97.40	splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=4 SV=1	[more]
tr\|A0A0A0LAZ0\|A0A0A0LAZ0_CUCSA	4.0e-145	97.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=4 SV=1	[more]
tr\|W9R928\|W9R928_9ROSA	2.7e-133	89.96	Splicing factor 3B subunit 4 OS=Morus notabilis OX=981085 GN=L484_014619 PE=4 SV...	[more]
tr\|A0A2P6SFK1\|A0A2P6SFK1_ROSCH	1.7e-132	88.89	Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa c...	[more]
tr\|F6GWY0\|F6GWY0_VITVI	1.7e-132	88.56	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01470 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034158	SF3B4_RRM1
IPR034159	SF3B4_RRM2
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006787.2.1	MELO3C006787.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 327..344 score: 27.78 coord: 250..266 score: 27.06 coord: 270..282 score: 30.77 coord: 282..303 score: 32.73 coord: 306..322 score: 32.94 coord: 349..372 score: 29.23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..372
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..372
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..316
None	No IPR available	PANTHER	PTHR44799	FAMILY NOT NAMED	coord: 19..369
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..92 e-value: 6.6E-14 score: 62.2 coord: 106..180 e-value: 1.4E-24 score: 97.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..90 e-value: 2.0E-15 score: 56.2 coord: 107..177 e-value: 2.6E-20 score: 71.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 105..184 score: 17.268
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 11..96 score: 15.119
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 24..104 e-value: 7.5E-22 score: 79.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 105..193 e-value: 1.6E-25 score: 91.3
IPR034159	SF3B4, RNA recognition motif 2	CDD	cd12335	RRM2_SF3B4	coord: 104..186 e-value: 5.89661E-63 score: 197.132
IPR034158	SF3B4, RNA recognition motif 1	CDD	cd12334	RRM1_SF3B4	coord: 29..93 e-value: 1.54006E-46 score: 154.289
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 28..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006787.2	Csa3G172960	Cucumber (Chinese Long) v2	cumedB223
MELO3C006787.2	CSPI03G15680	Wild cucumber (PI 183967)	cpimedB224
MELO3C006787.2	Cucsa.251850	Cucumber (Gy14) v1	cgymedB432
MELO3C006787.2	CmaCh14G015210	Cucurbita maxima (Rimu)	cmamedB272
MELO3C006787.2	CmaCh06G016120	Cucurbita maxima (Rimu)	cmamedB863
MELO3C006787.2	CmoCh14G015570	Cucurbita moschata (Rifu)	cmomedB257
MELO3C006787.2	CmoCh06G016050	Cucurbita moschata (Rifu)	cmomedB857
MELO3C006787.2	Lsi05G013510	Bottle gourd (USVL1VR-Ls)	lsimedB393
MELO3C006787.2	Cp4.1LG08g05600	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C006787.2	CsGy3G015760	Cucumber (Gy14) v2	cgybmedB201
MELO3C006787.2	Cla021865	Watermelon (97103) v1	medwmB447
MELO3C006787.2	ClCG05G007140	Watermelon (Charleston Gray)	medwcgB416
MELO3C006787.2	Cla97C05G088890	Watermelon (97103) v2	medwmbB423
MELO3C006787.2	Bhi01G000864	Wax gourd	medwgoB530
MELO3C006787.2	Carg24792	Silver-seed gourd	carmedB1020
MELO3C006787.2	Carg15507	Silver-seed gourd	carmedB0706
MELO3C006787.2	CsaV3_3G015880	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006787.2	Wax gourd	medwgoB554
MELO3C006787.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C006787.2	Cucurbita moschata (Rifu)	cmomedB260
MELO3C006787.2	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C006787.2	Bottle gourd (USVL1VR-Ls)	lsimedB397
MELO3C006787.2	Watermelon (Charleston Gray)	medwcgB433
MELO3C006787.2	Watermelon (97103) v1	medwmB463
MELO3C006787.2	Watermelon (97103) v2	medwmbB438