Carg24792 (gene) Silver-seed gourd

Overview
NameCarg24792
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsplicing factor 3B subunit 4
LocationCucurbita_argyrosperma_scaffold_212 : 156880 .. 160000 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACGCACCGAGAGAACAGACAGCCACTTCGCCTATGTCGCAGATCTAGAATCCAGGTCCGTCCTTTTTTTTCTTTACGTGCTCTTTCTCCCTGCTTCATCAATCAATTCATGTTCAAATCTCCCCGCGCTTAGGGTTTCACCGTTCTTCTAATTTCATTTATATCATACCATTTTCCTGTTTTTTGTGTGTGTTTCCTGCAGGTTTCTGAGGAGTCGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGGTACGTTCGTTCAGTTCTTCACTTAATGGACTCTTGGAAATTTCTGAATACTCTGTTTTAGCTGTTTTCTCCCCTTATTGATTGGAATAGTTCCTTAAATTGTACCCCATTTCTTATTTTGCAGTCAATGTGTATGTGCCGAAGGATAGAGTCACTAACTTGCATCAAGGATATGGGTTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGTAAGTTATGCTATGGGCTCTTTAACCTTTTGATCCTCCTAGTTATGTGGTTTGGGATTTTATCTTGATTTTCCATTGTCAATTAATTCTTTGCAGGCTATTAAGGTGCTAAATATGATTAAGCTCTATGGGAAGCCAATTCGTGTAAACAAAGTAAGTAGGAAATTTGTTCTTGTCCTATTGTAACAACCAAGTCCACTACGATTAGATATTTTCTTCTTTGGGTTTTCCCTTCCGAGTTTCTCCTCAAGGTTTTAAAACGTATATGCTAGGGAGAGGTTTCCACACCCTTATCAGAAATGCTTCGTTCCCCTCTCCAAGGTGGATATTGTCATCTTTGGGCTTTTCCTTCCGAACTTCCTCTCAAGGTTTTAAAACGCGTCTACTAGGGAGTGGTTTCCACACCTTTATAGGAAATGCTTCGTTCCCCTCTCCAACCAATGTAGGATCTCACAATCCACCCTCCTTGGGGGTCAGCGTCCTCGTTGGCACACCATTTGGTGACTGGCTCTGGTACCATTTGTAAACTGTCCAAGCCCACCACTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGAGCTTCTTTCAAGGTTTTAAAATGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGAAATGCTTCGTTCCCCTCTCCAACCAATGTGGGATCTCACAATCCACCCCCTTGAGGGCCCAGCGTCCTCGCTGGCACACCATCCGGTGACTAATACCATTTGTAACAGCCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCACTTCCGATCTTCCACTCAAGGTTTTAAAACGCGTTTGCTAGGGAGAGATTTTCTCACCCTTGTAAGAAATGCTTTGTTTCCCTCTCCAACCAATGTGGGATCTCACAACTATAGCACTATAGTGTGTTTTGATATTGATATGGTATTTTATCTTCTTATAAAAATGGATATTTAACTTTTATTATGTGTGCATTGCATATTCCAGGCATCTCAAGACAAGAAGAGTTTGGACGTCGGTGCAAATCTCTTCATAGGAAACCTTGACCCGGTAAGTCGTTATATTATTCTGATTATAACCGGAAAACTTGCAAGGCTAATGTTTTGAATATTGGTACTAAGTCATGATGTTTCTTTCAGGATGTCGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATTGTGACGAATCCTAAGGTTATAACTTTTCCGATAAACCGCATTACTCGTTTATGTTTTGTTTATCCTAGGAGATTAGAGATCATTTTCTAGCAAACTAGTTACTAGGAGATTAGGGTTCATTTTCAAGAGAACTAGTTACTCTCTAAGGTAGTGATCTTATTACAATTTAATGAAGTGAAGACCTTTAGCCAAAATAATGAGGGAGGGTGGCCAAGATATTAAAAACCTTTAGCCAATATGAACAATGCATTTATACATGTTTAAACGTTACATTTCTAGGATTTATTTCACGTCTACTCGAGATTCAAGCTACCATTGGAATGCTTCATTTTTTTAGTATGGAATATCTGGTTAAAGTGACTCAGTTTTACTTTTTGTTGTTCTCTTCTTATGGACATAGTTCACTATTTATCTTTGCTACTCAGCTCTTTTTTCGGGACGTATTAGAGCTGTTTAACTTGAAAGATTCGAGTCTTATCTTATGCACATTTGTCTTCTAACACGTGAAACATCTTTTTTTAACCAGATTATGAGGGATCCCGATACAGGAAACTCACGTGGGTTCGGTTTTATTAGCTATGACTCCTTCGAAGCATCTGATGCAGCAATTGAGGTAAGTCATGTTTTTTTGCTTATTGGAAAGCACTGCAGTGCAGCCAAATACATACAGCATTCTGTTCTGATATGTTAAGACATCCCTAAAAAAAGAATGAAGATTGAGACAATTTTTGTTACTTTCGTAACAGGCGATGAACGGCCAGTATCTTTGCAATCGTCAAATTACGGTTTCGTATGCCTATAAGAAAGATACGAAGGGAGAGCGGCACGGCACACCTGCAGGTAAGAATTGTTTGCCATTCTGTGAAGTTTATGGAGTTTTTTTAGGTTATGAACAGGATTCTGTGAACTTTGTGGCTTTTTCTGTTTTTAGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGGCCTCACACTTTGTTTGCCAGTGGCCCTCCGACACTTCCCAAGGTTGCACAGCCTAATGCTTCGTTTGGAGCTCCAGTGCCACCACGCCCCTTCGCAAATGGCGCAATGGCTCCCAGTCCGATTCCTGCAATACGTCCTCCACCACCGCAACGGGTGGCTTTCCCCCCTATGCAGATGGTTGGACAACCACAAGCCTGGCAGGGTCAACCGCAGCAACAGGCTCAAATGATGCCTGGTTCCTTCATGCTGCCACCAGTTCAGCAGTTCCGGCCACCTCCACCAAACATGCCTCCTCCACCTCCTCAAGCTCCAACACATTCCATGCCCGTCCCTCCACCAATGGGAATGGGAACACAGCCACAGCTTAGGCGACCACCGCCACCACCGATGCAGCAGCAGCTCGGAATGCCACCGATGCAAATGTCGTCAATGCCCCTCCCGCCACCTCCTAATCACATTCCGCCGCCTCTTCCATCTTCAGGCTGA

mRNA sequence

ATGGCACGCACCGAGAGAACAGACAGCCACTTCGCCTATGTCGCAGATCTAGAATCCAGGTCCGTCCTTTTTTTTCTTTACGTGCTCTTTCTCCCTGCTTCATCAATCAATTCATGTTCAAATCTCCCCGCGCTTAGGGTTTCTGAGGAGTCGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTCAATGTGTATGTGCCGAAGGATAGAGTCACTAACTTGCATCAAGGATATGGGTTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGATGTCGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATTGTGACGAATCCTAAGATTATGAGGGATCCCGATACAGGAAACTCACGTGGGTTCGGTTTTATTAGCTATGACTCCTTCGAAGCATCTGATGCAGCAATTGAGGCGATGAACGGCCAGTATCTTTGCAATCGTCAAATTACGGTTTCGTATGCCTATAAGAAAGATACGAAGGGAGAGCGGCACGGCACACCTGCAGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGGCCTCACACTTTGTTTGCCAGTGGCCCTCCGACACTTCCCAAGGTTGCACAGCCTAATGCTTCGTTTGGAGCTCCAGTGCCACCACGCCCCTTCGCAAATGGCGCAATGGCTCCCAGTCCGATTCCTGCAATACGTCCTCCACCACCGCAACGGGTGGCTTTCCCCCCTATGCAGATGGTTGGACAACCACAAGCCTGGCAGGGTCAACCGCAGCAACAGGCTCAAATGATGCCTGGTTCCTTCATGCTGCCACCAGTTCAGCAGTTCCGGCCACCTCCACCAAACATGCCTCCTCCACCTCCTCAAGCTCCAACACATTCCATGCCCGTCCCTCCACCAATGGGAATGGGAACACAGCCACAGCTTAGGCGACCACCGCCACCACCGATGCAGCAGCAGCTCGGAATGCCACCGATGCAAATGTCGTCAATGCCCCTCCCGCCACCTCCTAATCACATTCCGCCGCCTCTTCCATCTTCAGGCTGA

Coding sequence (CDS)

ATGGCACGCACCGAGAGAACAGACAGCCACTTCGCCTATGTCGCAGATCTAGAATCCAGGTCCGTCCTTTTTTTTCTTTACGTGCTCTTTCTCCCTGCTTCATCAATCAATTCATGTTCAAATCTCCCCGCGCTTAGGGTTTCTGAGGAGTCGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTCAATGTGTATGTGCCGAAGGATAGAGTCACTAACTTGCATCAAGGATATGGGTTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGATGTCGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATTGTGACGAATCCTAAGATTATGAGGGATCCCGATACAGGAAACTCACGTGGGTTCGGTTTTATTAGCTATGACTCCTTCGAAGCATCTGATGCAGCAATTGAGGCGATGAACGGCCAGTATCTTTGCAATCGTCAAATTACGGTTTCGTATGCCTATAAGAAAGATACGAAGGGAGAGCGGCACGGCACACCTGCAGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGGCCTCACACTTTGTTTGCCAGTGGCCCTCCGACACTTCCCAAGGTTGCACAGCCTAATGCTTCGTTTGGAGCTCCAGTGCCACCACGCCCCTTCGCAAATGGCGCAATGGCTCCCAGTCCGATTCCTGCAATACGTCCTCCACCACCGCAACGGGTGGCTTTCCCCCCTATGCAGATGGTTGGACAACCACAAGCCTGGCAGGGTCAACCGCAGCAACAGGCTCAAATGATGCCTGGTTCCTTCATGCTGCCACCAGTTCAGCAGTTCCGGCCACCTCCACCAAACATGCCTCCTCCACCTCCTCAAGCTCCAACACATTCCATGCCCGTCCCTCCACCAATGGGAATGGGAACACAGCCACAGCTTAGGCGACCACCGCCACCACCGATGCAGCAGCAGCTCGGAATGCCACCGATGCAAATGTCGTCAATGCCCCTCCCGCCACCTCCTAATCACATTCCGCCGCCTCTTCCATCTTCAGGCTGA

Protein sequence

MARTERTDSHFAYVADLESRSVLFFLYVLFLPASSINSCSNLPALRVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
Homology
[Close]
BLAST of Carg24792 vs. NCBI nr
Match: XP_022955618.1 (splicing factor 3B subunit 4-like [Cucurbita moschata])

HSP 1 Score: 367.9 bits (943), Expect = 3.9e-98
Identity = 191/234 (81.62%), Postives = 192/234 (82.05%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN SFGAPVPPRPFANGAMAPSPIPAIRPPPPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGSFGAPVPPRPFANGAMAPSPIPAIRPPPPQGV 268

[Close]
BLAST of Carg24792 vs. NCBI nr
Match: XP_022979818.1 (splicing factor 3B subunit 4-like [Cucurbita maxima])

HSP 1 Score: 365.9 bits (938), Expect = 1.5e-97
Identity = 190/234 (81.20%), Postives = 191/234 (81.62%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQI VSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQIAVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN SFGAPVPPRPFANGAMAPSPIPAIRPPPPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGSFGAPVPPRPFANGAMAPSPIPAIRPPPPQGV 268

[Close]
BLAST of Carg24792 vs. NCBI nr
Match: XP_022138265.1 (splicing factor 3B subunit 4 [Momordica charantia])

HSP 1 Score: 357.8 bits (917), Expect = 4.1e-95
Identity = 186/234 (79.49%), Postives = 188/234 (80.34%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN   GAPVPPRPFANG +APSPIPAIRPPPPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGVIGAPVPPRPFANGTIAPSPIPAIRPPPPQGV 268

[Close]
BLAST of Carg24792 vs. NCBI nr
Match: XP_004147654.1 (PREDICTED: splicing factor 3B subunit 4 [Cucumis sativus] >KGN57241.1 hypothetical protein Csa_3G172960 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 3.4e-94
Identity = 184/234 (78.63%), Postives = 188/234 (80.34%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN + GAPVPPRPFANGA+ P+PIPAIRP PPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGAIGAPVPPRPFANGAITPNPIPAIRPSPPQGV 268

[Close]
BLAST of Carg24792 vs. NCBI nr
Match: XP_008439058.1 (PREDICTED: splicing factor 3B subunit 4 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 3.4e-94
Identity = 184/234 (78.63%), Postives = 188/234 (80.34%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN + GAPVPPRPFANGA+ P+PIPAIRP PPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGAIGAPVPPRPFANGAITPNPIPAIRPSPPQGV 268

[Close]
BLAST of Carg24792 vs. TAIR10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 281.6 bits (719), Expect = 6.7e-76
Identity = 154/227 (67.84%), Postives = 163/227 (71.81%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           ++SEE LWELFVQAGPVVNVYVPKDRVTNLHQ YGFIE+RSEEDADY             
Sbjct: 35  QLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-- 225
           GFGFISYDSFEASDAAIE+M GQYL NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  
Sbjct: 155 GFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTA 214

Query: 226 QKSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPA 231
           QKSRPHTLFA GPP+     Q N        PRPFANG+M P PIPA
Sbjct: 215 QKSRPHTLFAMGPPS--SAPQVNGL------PRPFANGSMQPVPIPA 253

[Close]
BLAST of Carg24792 vs. TAIR10
Match: AT1G49760.1 (poly(A) binding protein 8)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-15
Identity = 51/167 (30.54%), Postives = 82/167 (49.10%), Query Frame = 0 

Query: 47  VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA---------------- 106
           V++  L+E F QAG VV+V V +D  T    GYG++ + + +DA                
Sbjct: 56  VTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRA 115

Query: 107 -------------------------DYDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 166
                                    D  +D K L++TFSAFG I+ + K+  DP +G S+
Sbjct: 116 IRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL-SCKVAVDP-SGQSK 175

Query: 167 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVS---YAYKKDTKGER 170
           G+GF+ YD+ EA+  AI+ +NG  L ++Q+ V    +  ++D  GE+
Sbjct: 176 GYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220

[Close]
BLAST of Carg24792 vs. TAIR10
Match: AT4G34110.1 (poly(A) binding protein 2)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 0 

Query: 47  VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA---------------- 106
           V++  L++ F Q G VV V V +D VT    GYG++ F + +DA                
Sbjct: 47  VTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKP 106

Query: 107 -------------------------DYDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 158
                                    D  +D K L+DTFS+FG IV + K+  D  +G S+
Sbjct: 107 IRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SCKVAVD-SSGQSK 166

[Close]
BLAST of Carg24792 vs. TAIR10
Match: AT1G22760.1 (poly(A) binding protein 3)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 45/172 (26.16%), Postives = 78/172 (45.35%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA--------------- 105
           +V+E  L++LF     VV+V V +D+      GY +I F +  DA               
Sbjct: 59  KVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDR 118

Query: 106 --------------------------DYDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 165
                                     D  +D K L++TFS+FG I+ + K+  D  TG S
Sbjct: 119 PIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTIL-SCKVAMDV-TGRS 178

Query: 166 RGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 177
           +G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  +     TP  R
Sbjct: 179 KGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227

[Close]
BLAST of Carg24792 vs. TAIR10
Match: AT1G71770.1 (poly(A)-binding protein 5)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-11
Identity = 45/161 (27.95%), Postives = 75/161 (46.58%), Query Frame = 0 

Query: 47  VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA---------------- 106
           V+E  L +LF Q  PV N+ V +D +T+   GY ++ F + EDA                
Sbjct: 70  VNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRP 129

Query: 107 -------------------------DYDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 166
                                    D  +D K LY+TFS+FG I+ + K+  D   G S+
Sbjct: 130 IRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTIL-SCKVAMDV-VGRSK 189

[Close]
BLAST of Carg24792 vs. Swiss-Prot
Match: sp|Q15427|SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.6e-58
Identity = 123/213 (57.75%), Postives = 143/213 (67.14%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSE  LWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDADY             
Sbjct: 23  KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      ++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+
Sbjct: 83  PIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK 142

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-- 216
           G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  
Sbjct: 143 GYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202

[Close]
BLAST of Carg24792 vs. Swiss-Prot
Match: sp|Q8QZY9|SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.6e-58
Identity = 123/213 (57.75%), Postives = 143/213 (67.14%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSE  LWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDADY             
Sbjct: 23  KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      ++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+
Sbjct: 83  PIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK 142

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-- 216
           G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  
Sbjct: 143 GYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202

[Close]
BLAST of Carg24792 vs. Swiss-Prot
Match: sp|Q6AYL5|SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.6e-58
Identity = 123/213 (57.75%), Postives = 143/213 (67.14%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSE  LWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDADY             
Sbjct: 23  KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGK 82

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      ++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+
Sbjct: 83  PIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK 142

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-- 216
           G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  
Sbjct: 143 GYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202

[Close]
BLAST of Carg24792 vs. Swiss-Prot
Match: sp|Q09442|SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 7.1e-51
Identity = 119/232 (51.29%), Postives = 140/232 (60.34%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSE  LWEL VQAGPVV+V +PKDRVT  HQG+GF+EF  EEDADY             
Sbjct: 23  KVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGK 82

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      +VDEKLLYDTFSAFGVI+  PKIMRD D+G S+
Sbjct: 83  PIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSK 142

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-- 225
           GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP  
Sbjct: 143 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLF 202

Query: 226 QKSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP 236
            K RPH +F+  P  +P    P A  G        A G       P  +PPP
Sbjct: 203 PKDRPHQVFSDVPLGVP-ANTPLAMPGVHAAIAAHATGR------PGYQPPP 247

[Close]
BLAST of Carg24792 vs. Swiss-Prot
Match: sp|Q55GD6|SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum OX=44689 GN=sf3b4 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.9e-37
Identity = 82/173 (47.40%), Postives = 109/173 (63.01%), Query Frame = 0 

Query: 47  VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY-------------- 106
           V+E  L ELF+QA PVV V++PKD++T  H G  ++EF+S  DA+Y              
Sbjct: 24  VTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKE 83

Query: 107 ------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 166
                                   DVDE++L+DTFS FG I+  PK+MRD + G S+GF 
Sbjct: 84  IKIKKENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFA 143

Query: 167 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAAS 182
           FI++DSFEASDAAIEAMN Q+LCN+ I+V+YA KKD+  ERHG+ AER++AAS
Sbjct: 144 FINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDS-NERHGSSAERIIAAS 194

[Close]
BLAST of Carg24792 vs. TrEMBL
Match: tr|A0A1S3AYG3|A0A1S3AYG3_CUCME (splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 184/234 (78.63%), Postives = 188/234 (80.34%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN + GAPVPPRPFANGA+ P+PIPAIRP PPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGAIGAPVPPRPFANGAITPNPIPAIRPSPPQGV 268

[Close]
BLAST of Carg24792 vs. TrEMBL
Match: tr|A0A0A0LAZ0|A0A0A0LAZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 184/234 (78.63%), Postives = 188/234 (80.34%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY             
Sbjct: 35  QVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQK 214

Query: 226 SRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRV 240
           SRPHTLFASGPPTLPKVAQPN + GAPVPPRPFANGA+ P+PIPAIRP PPQ V
Sbjct: 215 SRPHTLFASGPPTLPKVAQPNGAIGAPVPPRPFANGAITPNPIPAIRPSPPQGV 268

[Close]
BLAST of Carg24792 vs. TrEMBL
Match: tr|W9R928|W9R928_9ROSA (Splicing factor 3B subunit 4 OS=Morus notabilis OX=981085 GN=L484_014619 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.8e-89
Identity = 176/233 (75.54%), Postives = 182/233 (78.11%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           ++SEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGF+EFRSEEDADY             
Sbjct: 35  QISEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLFGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-Q 225
           GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP  
Sbjct: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSS 214

Query: 226 KSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQ 238
           KSRPHTLFASGPPTLP   Q N + GAPVPPRPFANGA+A  PIPA+RPPPPQ
Sbjct: 215 KSRPHTLFASGPPTLPNGPQANGTMGAPVPPRPFANGAVASGPIPALRPPPPQ 267

[Close]
BLAST of Carg24792 vs. TrEMBL
Match: tr|F6GWY0|F6GWY0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01470 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 174/234 (74.36%), Postives = 182/234 (77.78%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +V+EE LWELFVQAGPVVNVYVPKDRVTNLHQGYGF+EFRSEEDADY             
Sbjct: 35  QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94

Query: 106 ---------------------------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 165
                                      DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR
Sbjct: 95  PIRVNKASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154

Query: 166 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQ- 225
           GFGF+SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP  
Sbjct: 155 GFGFVSYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSA 214

Query: 226 -KSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQ 238
            KSRPHTLFASGPPTLP V Q N + GAP+PPRPFANG + P PIPA+RPPPPQ
Sbjct: 215 PKSRPHTLFASGPPTLPNVPQANGNMGAPMPPRPFANGVVPPVPIPAMRPPPPQ 268

[Close]
BLAST of Carg24792 vs. TrEMBL
Match: tr|A0A2P5D333|A0A2P5D333_PARAD (Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_101240 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 9.3e-88
Identity = 177/247 (71.66%), Postives = 182/247 (73.68%), Query Frame = 0 

Query: 46  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY------------- 105
           +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGF+EFRSEEDADY             
Sbjct: 35  QVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYVSDFFTALLYEII 94

Query: 106 -----------------------------------------DVDEKLLYDTFSAFGVIVT 165
                                                    DVDEKLLYDTFSAFGVIVT
Sbjct: 95  DAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 154

Query: 166 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 225
           NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG
Sbjct: 155 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 214

Query: 226 TPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFANGAMAPSPIPA 238
           TPAERVLAASNP  KSRPHTLFASGPPTLP   Q N + GAPVPPRPFANGA+AP PIP 
Sbjct: 215 TPAERVLAASNPTSKSRPHTLFASGPPTLPNGPQVNGTMGAPVPPRPFANGAVAPGPIPP 274

The following BLAST results are available for this feature:
BLAST of Carg24792 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022955618.13.9e-9881.62splicing factor 3B subunit 4-like [Cucurbita moschata][more]
XP_022979818.11.5e-9781.20splicing factor 3B subunit 4-like [Cucurbita maxima][more]
XP_022138265.14.1e-9579.49splicing factor 3B subunit 4 [Momordica charantia][more]
XP_004147654.13.4e-9478.63PREDICTED: splicing factor 3B subunit 4 [Cucumis sativus] >KGN57241.1 hypothetic... [more]
XP_008439058.13.4e-9478.63PREDICTED: splicing factor 3B subunit 4 [Cucumis melo][more]
BLAST of Carg24792 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18510.16.7e-7667.84RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G49760.11.7e-1530.54poly(A) binding protein 8[more]
AT4G34110.11.4e-1230.92poly(A) binding protein 2[more]
AT1G22760.11.5e-1126.16poly(A) binding protein 3[more]
AT1G71770.11.5e-1127.95poly(A)-binding protein 5[more]
BLAST of Carg24792 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q15427|SF3B4_HUMAN1.6e-5857.75Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1[more]
sp|Q8QZY9|SF3B4_MOUSE1.6e-5857.75Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1[more]
sp|Q6AYL5|SF3B4_RAT1.6e-5857.75Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1[more]
sp|Q09442|SF3B4_CAEEL7.1e-5151.29Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV... [more]
sp|Q55GD6|SF3B4_DICDI5.9e-3747.40Splicing factor 3B subunit 4 OS=Dictyostelium discoideum OX=44689 GN=sf3b4 PE=3 ... [more]
BLAST of Carg24792 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AYG3|A0A1S3AYG3_CUCME2.3e-9478.63splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=4 SV=1[more]
tr|A0A0A0LAZ0|A0A0A0LAZ0_CUCSA2.3e-9478.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=4 SV=1[more]
tr|W9R928|W9R928_9ROSA3.8e-8975.54Splicing factor 3B subunit 4 OS=Morus notabilis OX=981085 GN=L484_014619 PE=4 SV... [more]
tr|F6GWY0|F6GWY0_VITVI1.1e-8874.36Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g01470 PE=4 SV=... [more]
tr|A0A2P5D333|A0A2P5D333_PARAD9.3e-8871.66Splicing factor-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1012... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034159SF3B4_RRM2
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24792-RACarg24792-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 69..158
e-value: 8.1E-15
score: 65.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 40..91
e-value: 2.7E-11
score: 43.0
coord: 92..155
e-value: 7.4E-16
score: 57.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 40..162
score: 13.635
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 92..171
e-value: 1.4E-20
score: 75.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 38..91
e-value: 3.8E-13
score: 51.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..348
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..348
NoneNo IPR availablePANTHERPTHR44799FAMILY NOT NAMEDcoord: 46..93
coord: 91..346
IPR034159SF3B4, RNA recognition motif 2CDDcd12335RRM2_SF3B4coord: 91..164
e-value: 8.02188E-52
score: 167.857
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 91..171
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 46..91