Cp4.1LG08g05600 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSplicing factor 3B subunit 4
LocationCp4.1LG08 : 728182 .. 732735 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTAAGAAAACAAAACCCCGTAGGAACTCCTTCGACTCTCCCCAGTCTGCAAGAGGTTTTAGATTGTAGTTTCTGATCCCCAAACGCGGCAACTGGTTCACCGACTTGCCGGAGAAGATGACGACGAAGATAGCGCCGGGGGTCGGAGCTAATCTGCTCGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTCCTTTGTTCTCTTCCTCCCTGCTTTTTTCAACTAATCCATCTTCAAATCCCCTCCTCTAGGGTTTCTATGTTCATTTAATTTTGTTTTTGTTATACTATTTTTCTGTTTTTTGTGTTTCTTGTAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGGTGCGTTCTTTCGTTTCTCTCGTTTTGTGAAGTCTTTGGAATTTATGGAGACTCTGTTTGAGCTGTCTTTTTTCCTTCTTGGTTTGAGCATTTCCTTGAAAAAATTTGTGTCCACTTGTTATTTTGCAGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGTAAGTAACGCTGGGACTCTTGCGCTTTTTTATCCTCCTAGTTATGTGTTTATTTTGATTTTCCATTCTTAATGCTTTTGCAGGCAATTAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGTGTGTAGGGGATTTATTCTTTCAACTGTGCTAGGATGCGTTTTGATTTTCTGCTTAGCAAAGGAAGATGGTATTTTATATTCTTATGAAAATTGATATCTTACTTTTGTTATGTGTGCATTGCATATTTCCAGGCGTCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTAGACCCTGTGAGTAGTTATTTTATCATGATTATAACGGGAAGACTTGCAAGCTAATGATTTAACGAAGGTAACTAAACCTTGACGTTTGTGTCAGGATGTCGATGAAAAGCTCCTCTACGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGGTTATAACTTTTCCTATAAACCTCATCACTCATTTATGTTTTGTTTATCTTAGGAGATTAGGGCTCATTTTCAAGCAAACTAGTTACTTTCTAAGGAAGTAATCTTATTACAACTTAATGAAGTGAAGTCCCTTCATGAAAATATTAACCATGACATTGCCTTTTAGTACATTTCACATGTATACGATATCTTTGGCTGTGTATCTTTTCTGGAGCGTGTTGAACATAGTTCGTCTCTAGCCTTTATTTTCTTTTATGGGGCTGCTAAACCTTGGAAGTTTGTGGTTATTTTTGGCTTTTATTTATTGTTAAATCATAAATAGGAAAATTTGGTCCCTATGGTTTGGAAAAAATTATAATTTAAACTCTATGGTCTTAAAAGTTAGAAAATAGTCGTTATGGTATGATAAGACCTCATAAATAACCTCTATGGTTTGATAAAATTCTCATAAATAAGGTCTATTTCTAACACTTAAGACCATGGGGACTAAATTCTAACTTGCTTTAAACCATAGAGACTAAATTTGTAATTTAACCTTTATTAATTTCTTTCTTTGTGATTTTGTAATGATTATGAAGTGAATCCTGAAAATTCATTCCTACCAAATATTGGCTGTTTAGCCAAAAGATTGCTCTGGATTATAAAACTGGTCTTGAATTTCTGATGTCCAATAAAAGATCTAGGGAGTTCAAGATAAGGGGAAGGGAAGACAAGATCTTAGAAATCTTTTAGCCAAGTAGACAATGCATTTATACATGTCTAAAAGTTAAATTTGTAGAATTTATTTCATGGCCACTCCGCATAAGATTCTGTAGTTGCTTTTGTGAACTGTAGCATTGTATTTAGTAAATCCATTTCTTGCCCCCCCCCCCCNAAAAAAAAGAATGAAGAATTACAGTATTTGTTCACTTTCTGGCATCTTACTTGAAGGGTGTTTTAGTAGAATACTGTTATGACGTTATTATTATATGGATCACTGTAATTTTCCAATTTCTCGTTCTTTTGTTTTATCTTTCTTTCTCATGTATAATGCCTCTTTGGTTGAAGTAAATTGACATGTCTCTCCTATTTCAAGCATAATGGTGATTGTTAGCAGCCAGTTTATGGTTTGGTTTCTTTTCTCTTTAACAAGTGTCTTTCCTAATAAAACATCATTTTAAATGTTTTCTCTTCCATTATTATTTTATTTTCGTGTATTACTTGGATTTACTGTATATTTTCTAGGATTTTGTAACTGGTTTTTCTTCCATGTGGGCTAGTACATTTTACTAGTACTTACCAGTATGATAATGTTTGTGAAAATGGGACTAGTTTTATGTCCTGGCTTTCTATATAATATTATTCTCTTGAAGTTCTTGTAGTTAGGTACGCCAGATTGGAAATTTGTTTGGCCTTTTAGGGGGTTAATAACATCATGGCTGTTGGGAGGCGTCTATATTTTTCTTACTGAACGTCTATCAGATCAGTTTCCTTCCATGCTTCAAGAGCAACGCAGAACTAGAGTTTTGTGTGCATAAGACACCACGCTGTTCCTTTATTTTTTAACTAAAGATCACTTCTTTTTGTATGCTCTATTTTTCATCTTTAGTTCTCTGTATCTTCTGTGTACTCAGGCTCTTTTTGGGGATGTATCAGAACGGTTTAATATGAAAGTTCTGAGTTTTATGCACTTTGTGTTCTAACACTTCAAATATCTTCGTGTTTCTAACCAGATTATGAGAGATCCAGATACGGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATTGAGGTGTGTCTTTTCTTTTCTTATTGGTCGATCTCTGCACGCATGTCATTCTGTTTTGATACTATATGATGCTCATAATAAGCTTCCCTTAAATCATTGGAGCCTTCAGTGCCCCTAAATGTTAATGAAGTGAAAGAAGTGTTTTATTGCTACCATCTGATGTTAGCTTGAGTAGTATGGAGTTGAATTTGCAACCTTTGAATAGCTACTTAAAAGATGATGTTTTTGAAGATTCTTATTAGAAAGATTTTGCTTCTTTATTTCAAGGTGATTAAAGATAATCCTCCACCTCTCTTATTGAAGTTTGTGGTTTCAAGATGTGCTAAAGTTCTCTATTGGTTAAACATGGAAACAGTGAAAAACATTGCCCCTCTAAGCTCTTAGGTCCTGTTTTCGTGGTTTTCTTTCCACTTTCCATGAATTTTGTTTTGTTTGCTATTCTTGTGGAAATCTCAGCTTCTTTATCAGTTGATTTCCTTCGTGGCTTCGGTTCAAGCTTTTATCTCCAGATGGTTTTGACTTTTGTTCTCTTGTTCTGTGGTTGCTGTCGTTAACAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGGTAAGAATTATTTGCTGATCCGTGAACTTTATGGAATTGTTTTAGGTTATGAACAGATTTGAACCTAGTGATCTGTGGAAGGATATCATCGTCGTTGTCGTTGCTTATTTATCTCTGGTGTGGCTTTGTCTATTTTGTAGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTGCCCCCTGTTCAGCAATTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCACCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACTGCCAATGCAGCAGCAGCAGCAGCAGGGAAGGCCCCCTATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAAGACATTATTATACTAAGCTAGCAATGAGAATGAAGTTTTTTCTGCCTGAACATCATGTTTAGTTCTTTTTTATGATAATGTCCAGTAGGTTGTTATATTATCATTCAAATTGTAACACTTTCATCCGAGAAATTAGCAGGAAGCAATATGACATTTTTGCTACAAAATAGAGAATGTTCTCATCTTAGTTTGGGATACTTGTCAAGCTTCTAATGCACATTAGTAGAGTATCAATGGATATAGGCAAAGACCAGGTAGGTGACCATCGAGACTCGAGTTCGTTCTCTCTTTCAAAAACTCAATCTATTAGGAAATGTTTGGTTT

mRNA sequence

CAATTAAGAAAACAAAACCCCGTAGGAACTCCTTCGACTCTCCCCAGTCTGCAAGAGGTTTTAGATTGTAGTTTCTGATCCCCAAACGCGGCAACTGGTTCACCGACTTGCCGGAGAAGATGACGACGAAGATAGCGCCGGGGGTCGGAGCTAATCTGCTCGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGCAATTAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGCGTCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTAGACCCTGATGTCGATGAAAAGCTCCTCTACGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACGGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATTGAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTGCCCCCTGTTCAGCAATTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCACCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACTGCCAATGCAGCAGCAGCAGCAGCAGGGAAGGCCCCCTATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAAGACATTATTATACTAAGCTAGCAATGAGAATGAAGTTTTTTCTGCCTGAACATCATGTTTAGTTCTTTTTTATGATAATGTCCAGTAGGTTGTTATATTATCATTCAAATTGTAACACTTTCATCCGAGAAATTAGCAGGAAGCAATATGACATTTTTGCTACAAAATAGAGAATGTTCTCATCTTAGTTTGGGATACTTGTCAAGCTTCTAATGCACATTAGTAGAGTATCAATGGATATAGGCAAAGACCAGGTAGGTGACCATCGAGACTCGAGTTCGTTCTCTCTTTCAAAAACTCAATCTATTAGGAAATGTTTGGTTT

Coding sequence (CDS)

ATGACGACGAAGATAGCGCCGGGGGTCGGAGCTAATCTGCTCGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGCAATTAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGCGTCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTAGACCCTGATGTCGATGAAAAGCTCCTCTACGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACGGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATTGAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTGCCCCCTGTTCAGCAATTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCACCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACTGCCAATGCAGCAGCAGCAGCAGCAGGGAAGGCCCCCTATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAA

Protein sequence

MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPPMQMSSMPPPPPPNHIPPPHPSSG
Homology
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BLAST of Cp4.1LG08g05600 vs. Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 3.8e-90
Identity = 216/384 (56.25%), Postives = 243/384 (63.28%), Query Frame = 1 

Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSP 259
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP      G  P P
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPPP 247

Query: 260 IPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPP 319
           +      PP G A P    PG PPA           MP   M P      PP    P   
Sbjct: 248 V------PPPG-ALP----PGIPPA-----------MPPPPMPPGAAGHGPPSAGTPGAG 307

Query: 320 PQAPGHSMPIP-PPMGM----------------GGGQPPL------WRPPPLPMQQQQQQ 378
               GHS P P PP GM                G G P         +PPP P       
Sbjct: 308 HPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHP 365

[Close]
BLAST of Cp4.1LG08g05600 vs. Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 4.2e-89
Identity = 207/364 (56.87%), Postives = 234/364 (64.29%), Query Frame = 1 

Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSP 259
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP      G  P P
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPPP 247

Query: 260 IPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPP 319
           +      PP G A P    PG PPA    P   G    G             PP    P 
Sbjct: 248 V------PPPG-ALP----PGIPPAMPPPPMPPGAGGHG-------------PPAAGTPG 307

Query: 320 PQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRP---PMQMSSMPPPPPPNHIP 378
              PGH    P P   GG   P      L        G P   P      PPP PP  +P
Sbjct: 308 AGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMP 346

[Close]
BLAST of Cp4.1LG08g05600 vs. Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 4.2e-89
Identity = 207/364 (56.87%), Postives = 234/364 (64.29%), Query Frame = 1 

Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSP 259
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP      G  P P
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPPP 247

Query: 260 IPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPP 319
           +      PP G A P    PG PPA    P   G    G             PP    P 
Sbjct: 248 V------PPPG-ALP----PGIPPAMPPPPMPPGAGGHG-------------PPAAGTPG 307

Query: 320 PQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRP---PMQMSSMPPPPPPNHIP 378
              PGH    P P   GG   P      L        G P   P      PPP PP  +P
Sbjct: 308 AGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMP 346

[Close]
BLAST of Cp4.1LG08g05600 vs. Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 323.6 bits (828), Expect = 3.0e-87
Identity = 202/361 (55.96%), Postives = 236/361 (65.37%), Query Frame = 1 

Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE +LWEL VQAGPVV+V +PKDRVT  HQG+GF+EF  EEDA
Sbjct: 8   ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK+LNMIKLYGKPI+VNKAS  +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIAPSPI 259
           GT AER+LAA NP   K RPH +F+  P  +P    P    G        A G       
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVP-ANTPLAMPGVHAAIAAHATGR------ 247

Query: 260 PAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPN---MPP 319
           P  +PPP  G+A               Q   QGQ        PPV    PPPP+   MPP
Sbjct: 248 PGYQPPPLMGMA---------------QSGYQGQ-------YPPVP---PPPPSVTPMPP 307

Query: 320 PPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPPMQMSSMPPPPPPNHIPP 376
           P P  PG +   PPP   G   PP   PPP P +     G P      MPPPPPP+   P
Sbjct: 308 PMPPTPGMTPRPPPPPSSGMWPPP---PPPPPGRTPGPPGMP-----GMPPPPPPSRFGP 328

[Close]
BLAST of Cp4.1LG08g05600 vs. Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2)

HSP 1 Score: 243.4 bits (620), Expect = 3.9e-63
Identity = 151/326 (46.32%), Postives = 199/326 (61.04%), Query Frame = 1 

Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           +RNQDAT Y+GNLD +V++ +L+EL +QAGPVVN+++P+DRV N H G+GF EF  E+D 
Sbjct: 6   DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 139
           +YA ++LN +KL+GKPIRVN+ASQD+  +  +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66  EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125

Query: 140 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 199
           V  P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 185

Query: 200 HGTPAERVLAAS--------NPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRP---- 259
           HG  AER LAA+         PQ + P     + P        P     T +PP P    
Sbjct: 186 HGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPL 245

Query: 260 -FANGGIAPSPIPAIRPPPPQGVAFPPMQ-MPGQPPAWQGQPQQQGQIMPGSMMLPPVQQ 319
             A   + P  IP + P       F   Q  PG P      P     + PG   L P   
Sbjct: 246 VGATTAVPPLSIPNVLP-------FTAAQHFPGMP----AMPMMNVPMGPGGAPLVP--- 305

Query: 320 FRPPPPNMPPPPPQAPGHSMPIPPPM 331
             PPPP M    P     ++P  P M
Sbjct: 306 --PPPPGMVMASPSPAAATIPGAPVM 314

[Close]
BLAST of Cp4.1LG08g05600 vs. TrEMBL
Match: A0A0A0LAZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G172960 PE=4 SV=1)

HSP 1 Score: 693.3 bits (1788), Expect = 1.6e-196
Identity = 356/380 (93.68%), Postives = 361/380 (95.00%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLP 300
            +PPRPFANG I P+PIPAIRP PPQGVAFPPM M GQPPAWQGQPQQ GQ+MPGSM+ P
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSMIPP 300

Query: 301 PVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPPMQM 360
           PVQQFRPPPPNMP PPPQA  HSMPIPPPMGMGG QP LWRPPP PM QQQQ GRPPMQM
Sbjct: 301 PVQQFRPPPPNMPLPPPQAQAHSMPIPPPMGMGGAQPQLWRPPPPPM-QQQQPGRPPMQM 360

Query: 361 SSMPPPPPPNHIPPPHPSSG 381
           SSMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]
BLAST of Cp4.1LG08g05600 vs. TrEMBL
Match: F6GWY0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01470 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 9.5e-165
Identity = 312/374 (83.42%), Postives = 327/374 (87.43%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQV+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQ--KSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP   KSRPHTLFASGPPTLP V Q NG M
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNVPQANGNM 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIM-PGSM 300
           G  MPPRPFANG + P PIPA+RPPPPQ  AFPPMQ+ G PP+WQGQPQQ GQ M P  M
Sbjct: 241 GAPMPPRPFANGVVPPVPIPAMRPPPPQSGAFPPMQLAG-PPSWQGQPQQPGQPMQPPMM 300

Query: 301 MLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPP 360
             PP+QQFRPPPP+MPPPP Q        PPP  + GG PP+WRPPP P   QQ  GRPP
Sbjct: 301 PPPPLQQFRPPPPSMPPPPQQVMQALSRPPPPPALMGGPPPVWRPPPPP---QQLAGRPP 360

Query: 361 --MQMSSMPPPPPP 370
             +QMS  PPPPPP
Sbjct: 361 TMLQMSMPPPPPPP 370

[Close]
BLAST of Cp4.1LG08g05600 vs. TrEMBL
Match: W9R928_9ROSA (Splicing factor 3B subunit 4 OS=Morus notabilis GN=L484_014619 PE=4 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 4.7e-164
Identity = 309/375 (82.40%), Postives = 328/375 (87.47%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNGTMG 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  KSRPHTLFASGPPTLP   Q NGTMG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSKSRPHTLFASGPPTLPNGPQANGTMG 240

Query: 241 TLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMML 300
             +PPRPFANG +A  PIPA+RPPPPQG+ FPPMQ+PGQ P WQGQPQQ GQ++P  +M 
Sbjct: 241 APVPPRPFANGAVASGPIPALRPPPPQGLPFPPMQVPGQ-PGWQGQPQQPGQVLPPPVMP 300

Query: 301 PPVQQFRPPPPNMPPPPPQ-APGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQ---QQGR 360
           PP  Q   PPPNMPPPP Q AP    P+PPPMGM   QP  WRPPP P Q+ Q   Q   
Sbjct: 301 PPPMQHFRPPPNMPPPPQQAAPLPQRPLPPPMGM--AQPQGWRPPPPPQQRPQLMPQGSI 360

Query: 361 PPMQMSSMPPPPPPN 371
           PP+   ++PPPPPP+
Sbjct: 361 PPLPHHNLPPPPPPS 372

[Close]
BLAST of Cp4.1LG08g05600 vs. TrEMBL
Match: B9RRM5_RICCO (Spliceosome associated protein, putative OS=Ricinus communis GN=RCOM_1647480 PE=4 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 3.0e-163
Identity = 309/381 (81.10%), Postives = 330/381 (86.61%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIK++NMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKIMNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLL+DTFSAFGVIVTNPKIMRDP+TGNSRGFGFISYDSF+ASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QKSRPHTLFASGPPTLP + Q NGT+
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSQKSRPHTLFASGPPTLPSIPQANGTV 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMM 300
           G  +PPRPFANG + P P+P +RP  P   AFPPMQ+ GQ PAWQGQP Q GQ+MP  +M
Sbjct: 241 GAPVPPRPFANGAVPPGPVPPLRPSAPPTAAFPPMQVAGQ-PAWQGQPPQPGQVMPPQVM 300

Query: 301 LPPVQQFRPPPPNMPPPPPQAPGHSMPIPP-PMGMGGGQPPLWRPPPLPMQQQQQQGRPP 360
            PP  QFRPPPPNMPPPPPQ     +P PP PMGM G Q  +WR PP P   QQ  G PP
Sbjct: 301 PPPPMQFRPPPPNMPPPPPQV-AQVLPRPPQPMGM-GMQQQVWRQPPPP---QQLAGGPP 360

Query: 361 MQMSSMPPPPPPNHIPPPHPS 379
           MQ   M PPPPPN +PPP PS
Sbjct: 361 MQQMMMQPPPPPNMLPPPPPS 375

[Close]
BLAST of Cp4.1LG08g05600 vs. TrEMBL
Match: A0A067KUM8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08380 PE=4 SV=1)

HSP 1 Score: 578.9 bits (1491), Expect = 4.4e-162
Identity = 308/373 (82.57%), Postives = 323/373 (86.60%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQV+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVAEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFGEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLL+DTFSAFGVIVTNPKIMRDP+TGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QKSRPHTLFASGPP LP VAQ NG +
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPKLPTVAQANGAV 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQG--QPQQQGQIMPGS 300
           G  +PPRPFANGG+ P+PIPA+RPPPP   AFPPMQ+ GQ PAWQG  QP Q GQ MP  
Sbjct: 241 GAPVPPRPFANGGVPPAPIPALRPPPPPNAAFPPMQVAGQ-PAWQGQVQPPQPGQAMPPP 300

Query: 301 MMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRP 360
           +M PP  QFRPPPPNMPPPP Q     +P PPP+ MG G P +WR PP P   QQ  G P
Sbjct: 301 VMPPPQMQFRPPPPNMPPPPSQVAQAPLPRPPPLAMGMGVPQVWRQPPPP---QQLPGGP 360

Query: 361 PMQMSSMPPPPPP 370
            MQ   M PPPPP
Sbjct: 361 FMQQMLMQPPPPP 369

[Close]
BLAST of Cp4.1LG08g05600 vs. TAIR10
Match: AT2G18510.1 (AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 481.5 bits (1238), Expect = 4.8e-136
Identity = 277/382 (72.51%), Postives = 291/382 (76.18%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQ YGFIE+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASDAAIE+M GQYL 
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHTLFA GPP+     Q NG  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMM 300
                PRPFANG + P PIPA R PPP     PP     QPP+W  QPQQ         M
Sbjct: 241 -----PRPFANGSMQPVPIPAPRQPPPP----PPQVYQTQPPSWPSQPQQHS-------M 300

Query: 301 LPPVQQFRPPPPNMPPPPPQAPGHSM------PIPPPMGMGGGQPPLWRPPPLPMQQQ-- 360
           +PP  QFRPP    PPPPPQ   H        P PPP  MG  Q   W  PP  MQQQ  
Sbjct: 301 VPPPMQFRPPQGMPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGW--PPQHMQQQGG 360

Query: 361 -QQQGRPPMQMSSMPPPPPPNH 372
             QQ +PP Q   M  PPPP H
Sbjct: 361 PPQQQQPPYQHHHMSMPPPPPH 361

[Close]
BLAST of Cp4.1LG08g05600 vs. TAIR10
Match: AT4G34110.1 (AT4G34110.1 poly(A) binding protein 2)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-31
Identity = 73/164 (44.51%), Postives = 105/164 (64.02%), Query Frame = 1 

Query: 24  DATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAI 83
           + + YVG+LD  V++  L++ F Q G VV V V +D VT    GYG++ F + +DA  AI
Sbjct: 35  NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94

Query: 84  KVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 143
           + LN I LYGKPIRV  + +D      GA N+FI NLD  +D K L+DTFS+FG IV + 
Sbjct: 95  QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SC 154

Query: 144 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 187
           K+  D  +G S+G+GF+ Y + E++  AIE +NG  L ++Q+ V
Sbjct: 155 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196

[Close]
BLAST of Cp4.1LG08g05600 vs. TAIR10
Match: AT1G49760.1 (AT1G49760.1 poly(A) binding protein 8)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 71/175 (40.57%), Postives = 109/175 (62.29%), Query Frame = 1 

Query: 28  YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
           YVG+LD  V++  L+E F QAG VV+V V +D  T    GYG++ + + +DA  A+  LN
Sbjct: 48  YVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107

Query: 88  MIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 147
            + L G+ IRV  + +D      G  N+FI NLD  +D K L++TFSAFG I+ + K+  
Sbjct: 108 FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL-SCKVAV 167

Query: 148 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS---YAYKKDTKGER 199
           DP +G S+G+GF+ YD+ EA+  AI+ +NG  L ++Q+ V    +  ++D  GE+
Sbjct: 168 DP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220

[Close]
BLAST of Cp4.1LG08g05600 vs. TAIR10
Match: AT1G22760.1 (AT1G22760.1 poly(A) binding protein 3)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-28
Identity = 65/189 (34.39%), Postives = 114/189 (60.32%), Query Frame = 1 

Query: 18  APERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEE 77
           A + + +++ Y G+LDP+V+E  L++LF     VV+V V +D+      GY +I F +  
Sbjct: 42  ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPN 101

Query: 78  DADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFG 137
           DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG
Sbjct: 102 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 161

Query: 138 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 197
            I++  K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  + 
Sbjct: 162 TILSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERA 221

Query: 198 ERHGTPAER 206
               TP  R
Sbjct: 222 RDENTPTPR 227

[Close]
BLAST of Cp4.1LG08g05600 vs. TAIR10
Match: AT1G71770.1 (AT1G71770.1 poly(A)-binding protein 5)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-28
Identity = 67/188 (35.64%), Postives = 113/188 (60.11%), Query Frame = 1 

Query: 9   VGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGY 68
           V A      A + + +++ YVG+LDP V+E  L +LF Q  PV N+ V +D +T+   GY
Sbjct: 43  VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGY 102

Query: 69  GFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKL 128
            ++ F + EDA  A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K 
Sbjct: 103 AYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKA 162

Query: 129 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 188
           LY+TFS+FG I+ + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L ++Q+ V 
Sbjct: 163 LYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 222

Query: 189 YAYKKDTK 196
           +  ++  +
Sbjct: 223 HFVRRQDR 227

[Close]
BLAST of Cp4.1LG08g05600 vs. NCBI nr
Match: gi|449459840|ref|XP_004147654.1| (PREDICTED: splicing factor 3B subunit 4 [Cucumis sativus])

HSP 1 Score: 693.3 bits (1788), Expect = 2.3e-196
Identity = 356/380 (93.68%), Postives = 361/380 (95.00%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLP 300
            +PPRPFANG I P+PIPAIRP PPQGVAFPPM M GQPPAWQGQPQQ GQ+MPGSM+ P
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVAFPPMPMAGQPPAWQGQPQQPGQMMPGSMIPP 300

Query: 301 PVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPPMQM 360
           PVQQFRPPPPNMP PPPQA  HSMPIPPPMGMGG QP LWRPPP PM QQQQ GRPPMQM
Sbjct: 301 PVQQFRPPPPNMPLPPPQAQAHSMPIPPPMGMGGAQPQLWRPPPPPM-QQQQPGRPPMQM 360

Query: 361 SSMPPPPPPNHIPPPHPSSG 381
           SSMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]
BLAST of Cp4.1LG08g05600 vs. NCBI nr
Match: gi|659077150|ref|XP_008439058.1| (PREDICTED: splicing factor 3B subunit 4 [Cucumis melo])

HSP 1 Score: 691.8 bits (1784), Expect = 6.7e-196
Identity = 355/380 (93.42%), Postives = 360/380 (94.74%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLP 300
            +PPRPFANG I P+PIPAIRP PPQGVAFPPM M GQPPAWQGQPQQ G +MPGSM+ P
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVAFPPMPMAGQPPAWQGQPQQPGHMMPGSMIPP 300

Query: 301 PVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPPMQM 360
           PVQQFRPPPPNMP PPPQA  HSM IPPPMGMGG QPPLWRPPP PM QQQQ GRPPMQM
Sbjct: 301 PVQQFRPPPPNMPMPPPQAQAHSMSIPPPMGMGGAQPPLWRPPPPPM-QQQQPGRPPMQM 360

Query: 361 SSMPPPPPPNHIPPPHPSSG 381
           SSMPPPPPPNHIPPP PSSG
Sbjct: 361 SSMPPPPPPNHIPPPLPSSG 379

[Close]
BLAST of Cp4.1LG08g05600 vs. NCBI nr
Match: gi|225430808|ref|XP_002271291.1| (PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera])

HSP 1 Score: 587.8 bits (1514), Expect = 1.4e-164
Identity = 312/374 (83.42%), Postives = 327/374 (87.43%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQV+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF+SYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFVSYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQ--KSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP   KSRPHTLFASGPPTLP V Q NG M
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRPHTLFASGPPTLPNVPQANGNM 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIM-PGSM 300
           G  MPPRPFANG + P PIPA+RPPPPQ  AFPPMQ+ G PP+WQGQPQQ GQ M P  M
Sbjct: 241 GAPMPPRPFANGVVPPVPIPAMRPPPPQSGAFPPMQLAG-PPSWQGQPQQPGQPMQPPMM 300

Query: 301 MLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQQQGRPP 360
             PP+QQFRPPPP+MPPPP Q        PPP  + GG PP+WRPPP P   QQ  GRPP
Sbjct: 301 PPPPLQQFRPPPPSMPPPPQQVMQALSRPPPPPALMGGPPPVWRPPPPP---QQLAGRPP 360

Query: 361 --MQMSSMPPPPPP 370
             +QMS  PPPPPP
Sbjct: 361 TMLQMSMPPPPPPP 370

[Close]
BLAST of Cp4.1LG08g05600 vs. NCBI nr
Match: gi|703094484|ref|XP_010095278.1| (Splicing factor 3B subunit 4 [Morus notabilis])

HSP 1 Score: 585.5 bits (1508), Expect = 6.7e-164
Identity = 309/375 (82.40%), Postives = 328/375 (87.47%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNGTMG 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  KSRPHTLFASGPPTLP   Q NGTMG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSKSRPHTLFASGPPTLPNGPQANGTMG 240

Query: 241 TLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMML 300
             +PPRPFANG +A  PIPA+RPPPPQG+ FPPMQ+PGQ P WQGQPQQ GQ++P  +M 
Sbjct: 241 APVPPRPFANGAVASGPIPALRPPPPQGLPFPPMQVPGQ-PGWQGQPQQPGQVLPPPVMP 300

Query: 301 PPVQQFRPPPPNMPPPPPQ-APGHSMPIPPPMGMGGGQPPLWRPPPLPMQQQQ---QQGR 360
           PP  Q   PPPNMPPPP Q AP    P+PPPMGM   QP  WRPPP P Q+ Q   Q   
Sbjct: 301 PPPMQHFRPPPNMPPPPQQAAPLPQRPLPPPMGM--AQPQGWRPPPPPQQRPQLMPQGSI 360

Query: 361 PPMQMSSMPPPPPPN 371
           PP+   ++PPPPPP+
Sbjct: 361 PPLPHHNLPPPPPPS 372

[Close]
BLAST of Cp4.1LG08g05600 vs. NCBI nr
Match: gi|255550690|ref|XP_002516394.1| (PREDICTED: splicing factor 3B subunit 4 [Ricinus communis])

HSP 1 Score: 582.8 bits (1501), Expect = 4.4e-163
Identity = 309/381 (81.10%), Postives = 330/381 (86.61%), Query Frame = 1 

Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIK++NMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKIMNMIKLFGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLL+DTFSAFGVIVTNPKIMRDP+TGNSRGFGFISYDSF+ASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QKSRPHTLFASGPPTLP + Q NGT+
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSQKSRPHTLFASGPPTLPSIPQANGTV 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMM 300
           G  +PPRPFANG + P P+P +RP  P   AFPPMQ+ GQ PAWQGQP Q GQ+MP  +M
Sbjct: 241 GAPVPPRPFANGAVPPGPVPPLRPSAPPTAAFPPMQVAGQ-PAWQGQPPQPGQVMPPQVM 300

Query: 301 LPPVQQFRPPPPNMPPPPPQAPGHSMPIPP-PMGMGGGQPPLWRPPPLPMQQQQQQGRPP 360
            PP  QFRPPPPNMPPPPPQ     +P PP PMGM G Q  +WR PP P   QQ  G PP
Sbjct: 301 PPPPMQFRPPPPNMPPPPPQV-AQVLPRPPQPMGM-GMQQQVWRQPPPP---QQLAGGPP 360

Query: 361 MQMSSMPPPPPPNHIPPPHPS 379
           MQ   M PPPPPN +PPP PS
Sbjct: 361 MQQMMMQPPPPPNMLPPPPPS 375

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SF3B4_HUMAN3.8e-9056.25Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1[more]
SF3B4_MOUSE4.2e-8956.87Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=1 SV=1[more]
SF3B4_RAT4.2e-8956.87Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1[more]
SF3B4_CAEEL3.0e-8755.96Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2[more]
SAP49_SCHPO3.9e-6346.32Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
BLAST of Cp4.1LG08g05600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAZ0_CUCSA1.6e-19693.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G172960 PE=4 SV=1[more]
F6GWY0_VITVI9.5e-16583.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01470 PE=4 SV=... [more]
W9R928_9ROSA4.7e-16482.40Splicing factor 3B subunit 4 OS=Morus notabilis GN=L484_014619 PE=4 SV=1[more]
B9RRM5_RICCO3.0e-16381.10Spliceosome associated protein, putative OS=Ricinus communis GN=RCOM_1647480 PE=... [more]
A0A067KUM8_JATCU4.4e-16282.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08380 PE=4 SV=1[more]
BLAST of Cp4.1LG08g05600 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18510.14.8e-13672.51 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G34110.19.4e-3144.51 poly(A) binding protein 2[more]
AT1G49760.11.2e-3040.57 poly(A) binding protein 8[more]
AT1G22760.12.6e-2834.39 poly(A) binding protein 3[more]
AT1G71770.12.6e-2835.64 poly(A)-binding protein 5[more]
BLAST of Cp4.1LG08g05600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459840|ref|XP_004147654.1|2.3e-19693.68PREDICTED: splicing factor 3B subunit 4 [Cucumis sativus][more]
gi|659077150|ref|XP_008439058.1|6.7e-19693.42PREDICTED: splicing factor 3B subunit 4 [Cucumis melo][more]
gi|225430808|ref|XP_002271291.1|1.4e-16483.42PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera][more]
gi|703094484|ref|XP_010095278.1|6.7e-16482.40Splicing factor 3B subunit 4 [Morus notabilis][more]
gi|255550690|ref|XP_002516394.1|4.4e-16381.10PREDICTED: splicing factor 3B subunit 4 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05600.1Cp4.1LG08g05600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 114..184
score: 2.3E-20coord: 28..97
score: 1.3
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 26..99
score: 2.2E-25coord: 113..187
score: 1.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 112..191
score: 17.268coord: 25..103
score: 18
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 20..106
score: 4.1E-30coord: 110..200
score: 5.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 25..195
score: 3.31
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 313..329
score: 7.1E-9coord: 226..242
score: 7.1E-9coord: 289..310
score: 7.1E-9coord: 334..351
score: 7.1E-9coord: 357..380
score: 7.1E-9coord: 251..263
score: 7.
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 262..375
score: 1.4E-133coord: 2..195
score: 1.4E
NoneNo IPR availablePANTHERPTHR24012:SF449SPLICING FACTOR 3B SUBUNIT 4coord: 262..375
score: 1.4E-133coord: 2..195
score: 1.4E