Carg15507 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15507
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	splicing factor 3B subunit 4
Location	Cucurbita_argyrosperma_scaffold_069 : 562463 .. 567120 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCGGCAACTGGTTCACCGACTCGCCGGAGAAGATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTTCTCGGCCAGCACGCCCCCGAGCGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTCCTTTGTTCTCTTCCTCCCTGCTTTTTCCAACTAATCCATCTTCAAATCCCCTCCTCTAGGGTTTCTATGTTCGTTTAATTTTGTTTTTGTTATACTATTTTTCTGTTTTTTGTGTTTCTTGTAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGGTGCGTTCTTTCGTTTCTCTCGTTTTGTGAAGTCTTTGGAATTTATGGAAACTCTGGTTGAGCTGTCTTTTTCCCTTCTTGGTTTGAGCATTTCCTTGAAAAAAATTGTGTCCACTTGTTATTTTGCAGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTACGTAAGTAACGCTGGGGCTCTTGCGCTTTTTTATCCTTCTAGTTATGTGTTTATTTTGATTTTCCATTCTTAATGCTTTTGCAGGCAATTAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGTGAGTAGGGGATTTACTCTTTCAACTGTGCTAGGATGCGTTTTGATATACTGCTCAGCAACGGAAGATGTTATTTTATGTTCTTATGAAAATGGATATCTTACCTTTGTTATGTGTGCATTGCATATTTCCAGGCATCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTCGACCCCGTGAGTAGTTATTTTATCATGTTTATATCCGGAAGACTTGCAAGCTAATGATTTAAAGAAGGTAACTAAACCTTGACGTTTGTTTCAGGATGTCGATGAAAAGCTCCTCTATGATACTTTCAGTGCTTTTGGGGTGATTGTGACAAATCCTAAGGTTATAACTTTTCCTATAAACCTCATCACTCATTTATGTTTTGTTTATCTTAGGAGGTTAGGGCTCATTTTCAAGTAAACTAGTTACTTTGTAAGGAAGTAATATTATTACAACTTAATGAAGTGAAGTCCTTTCATGGAAGTATTAAACCTTCACATTGCCTTTTAGTATATTTCACATGTATACAATATCTTTGGCTGTTTATCTTTTCTGGAGCGTGTTGAACATAGTTTGTCGCTAGCCTTTATTTTCTTTATGGGGCTGCTAAACCTTGGAAGTTTGTGGTTATTTTTGGCTTTTATGTATTGTTAAATCATAAATAGGAAAATTTGGTCCCTATGGTTTGGAAAAAATTATAATTTAAACTCTACGGTCTTAAAAGTTAGAAATTAGTCGTTATGGTATGATAAGACCTCATAAATAACCTCTATGGTTTGATAAAATTCTCATAAATAAGGACTATTTCTAACACTTAAGACCATGGGGACTAAATTCTAACTTGCTTTAAACCATAGAGACTAAATTTGTAATTTAACCTTTATTAATTTATTTCTTTGTGATTTTGTAATGATTATGAAGTGGATCATGAAAATTCATTCCTACAAAATATTGGCTGTTTGGCCAAAAGATTTCTCTGGATTATAAAACTGGACTCTTGAATTTCTGGTCCAATAAGAGGTCTAGGGAGTTCAAAATAAGGGGAAGGGAAGCCAAGATCTTAGAAATCTTTAGCCAAGTAGACAACGCATTTATACATGTCTAAACATTAAACTTCTAGAATTTATTTCATGGCTACTCCACATAAGATTCTGTAGTCGCTTTTGTGAATATTGAATTACTGTAGCATTTGTATTTAGTTCATCCATTGTATACCATTTCTTGTCCCCCCCCCCCAAAAAAAAAAAAAAGAATGAAGAATTACAGTATTTATTCACTTTCTGGCATCTTACTTGAAGGGTGTTTTAGAAGAAACCGTTATAGCGTTATTATTATATGGGTCACTGTAATTTTACAATTTTGCGTTCTTTTGTCTTATCCTTCTTTCTCATGTATAATGCCTCTTTGGTTGAAGTAAATTGACATGTCTCCTATTTCAAGCATAATGGTGCTTGGTAGCAGCCAGTTTATGGTTTGGTTTCTTCTCTCTTTAACGAGTGTCTTTCCTAATAAAACATCACTTTAAATATTGTCTCTTCCATTATTATTTTATTTTCGTGTATTACTTGGATTTACTTTATATTTTTTAGGATTTTTTAACTGGTTTTTCTTCCATGTGGGCTAGTACATCTTACTAGTACTTACCAGTACTATCATGTTTGTGAAAATGGGACTAGTTTTATGTCCTGGCTTTCTATTTACTATTATTTTCTTGAAGTGCTGTGTAGTTGGGTATGCTAGATTGGAAATTTGTTTGGGCTTTTAGGGGGTTAATAACATCATGGCTGTTGGGAGGCGTCTATATTTTGCTTACTGAACGTCTATCAGATCAGTTTCCTTCCATGCTTCAAGAGCAACGCAGAATTAGAGTTTTGTGTGCATAAGACGCCACGCTGTTCCTTTATTTTTTTTAATTAAAGATAACTTCTTTTTGTATGCTCTATTTTTCATCTTTAGTTCTTTGTATCTTCTGTGTACTCGGCTCTTTTTGGGGATGTATCAGAACGGTTTAACATGAAAGTTCTGAGTTTTATGCACATTTGTGTTCTAACACTTCAAGTGTCTTCGTGTTTCTAACCAGATTATGAGAGATCCAGATACAGGAAATTCGCGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGTGTGTCTTTTCTTTTCTTATTGGTCGATCTCTGCATGCACGTCATTCTGTTTTGATACTATATGATGCTCATAATAAGCTTCCCTTAATTCATTGGAGCCTTTAGTGCCCTTAAATGTTAATGAAGTGAAAGAAGTGTTTTATTGCTACCTATCCTTTGTCATGCTCTCGAAAAATAAAGATCTATTTCTTCACGTCAACCAATTCATAAGGAAAACTCTGTCTCCAAATTTTATTCAAGAAAGTTGTCCAAGTCTTTTAGCCCACTCAGTGAAGTAGGTTTCCTTTTCAATTTCTGTCCCTTCACTTTCCTTCCCCCGTTCTTTGCAGCCAAGTTGTTTTCTCCCCCTTGAATCAGATTCTTCATTAACTAGAGGAATGATCCATTCGACAAAAGACCCTACTTTCCCTCTCATGAAGATGGTTTTGATGCTGAATCTGATGTTAGCTTGAGTAGTATGGAGTTGAATTTGCAATCTTTGAATAGCTACTTAAAAGATGATGTTTTTGAAGATTCTTATTAGAAAAGTTTTGCTTCTTTATTTCAAGGTGATTAAAGATAATCCTCCACCTCTCTTATTGAAGTTTGTGGTTTCAAGATGTGCTAAAGTTCTCTACTGGTTAAACATGGAAACAGTGAAAAACATTGCCCCTCTAAGCTCTTAGGTCCTGTTTTCGTGGTTTTCTTTCCACCTTCCATGAATTTTGTTTTGTTTGCTATTCTTGTGGAAAGCTCAGCTTCTTTATCAGTTGATTTCTGTCGTGGCTTCGGTTCAAGCTTTTATCTCGAAATGGTTTTGACTTTTGTTTTCTTGTTCTGTGGTTGCTGTCGTTAACAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGGTAAGAATTGTTTGCTGATCCGTGAACTTTATGGAATTGTTTTAGGTTATGAACAGATTTGAAACTAGTGATCTGTGGAAGGATATCATCGTCGTTGTCATTGTCGTTGCTTATTTATCTCTGGTGTGGCTTGGTCTATTTTGTAGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAGTTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCGCCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAACAGCAGCAGCAGCCGGGAAGGCCCCCTATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAAGACATTATTATGCTAAGCTAGCAATGAGAATGAAGTTTTTTCTGCCTGAACATCGTGTTTATTTCTTTTTTATGATAATGTCCAGTAGGTTGTTATATTATCATTCAAATTGTAACACTTTCATCCGAGAAATTAGCAGGAAGCAATATGACATTTTTGCTACAAAATAGAGAATGTTCTCATCTTAGTTTGGGATA

mRNA sequence

ACTCGGCAACTGGTTCACCGACTCGCCGGAGAAGATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTTCTCGGCCAGCACGCCCCCGAGCGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTACGCAATTAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGCATCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTCGACCCCGATGTCGATGAAAAGCTCCTCTATGATACTTTCAGTGCTTTTGGGGTGATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACAGGAAATTCGCGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAGTTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCGCCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAACAGCAGCAGCAGCCGGGAAGGCCCCCTATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAAGACATTATTATGCTAAGCTAGCAATGAGAATGAAGTTTTTTCTGCCTGAACATCGTGTTTATTTCTTTTTTATGATAATGTCCAGTAGGTTGTTATATTATCATTCAAATTGTAACACTTTCATCCGAGAAATTAGCAGGAAGCAATATGACATTTTTGCTACAAAATAGAGAATGTTCTCATCTTAGTTTGGGATA

Coding sequence (CDS)

ATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTTCTCGGCCAGCACGCCCCCGAGCGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTACGCAATTAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGCATCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTCGACCCCGATGTCGATGAAAAGCTCCTCTATGATACTTTCAGTGCTTTTGGGGTGATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACAGGAAATTCGCGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAGTTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCGCCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAACAGCAGCAGCAGCCGGGAAGGCCCCCTATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAA

Protein sequence

MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQPGRPPMQMSSMPPPPPPNHIPPPHPSSG

Homology

[Close]

BLAST of Carg15507 vs. NCBI nr
Match: XP_022948089.1 (splicing factor 3B subunit 4-like [Cucurbita moschata])

HSP 1 Score: 599.4 bits (1544), Expect = 8.8e-168
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS 297
           LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS
Sbjct: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS 296

[Close]

BLAST of Carg15507 vs. NCBI nr
Match: XP_023540813.1 (splicing factor 3B subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 599.4 bits (1544), Expect = 8.8e-168
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS 297
           LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS
Sbjct: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS 296

[Close]

BLAST of Carg15507 vs. NCBI nr
Match: XP_022972146.1 (splicing factor 3B subunit 4-like [Cucurbita maxima])

HSP 1 Score: 597.8 bits (1540), Expect = 2.5e-167
Identity = 295/296 (99.66%), Postives = 295/296 (99.66%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS 297
           LMPPRPFANGGI PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS
Sbjct: 241 LMPPRPFANGGITPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGS 296

[Close]

BLAST of Carg15507 vs. NCBI nr
Match: XP_022138265.1 (splicing factor 3B subunit 4 [Momordica charantia])

HSP 1 Score: 575.1 bits (1481), Expect = 1.8e-160
Identity = 286/295 (96.95%), Postives = 289/295 (97.97%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGVIGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPG 296
            +PPRPFANG IAPSPIPAIRPPPPQGVAFPPMQMPGQ PAWQGQPQQ GQ+MPG
Sbjct: 241 PVPPRPFANGTIAPSPIPAIRPPPPQGVAFPPMQMPGQ-PAWQGQPQQPGQMMPG 294

[Close]

BLAST of Carg15507 vs. NCBI nr
Match: XP_022955618.1 (splicing factor 3B subunit 4-like [Cucurbita moschata])

HSP 1 Score: 529.6 bits (1363), Expect = 8.5e-147
Identity = 261/269 (97.03%), Postives = 264/269 (98.14%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEE LWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEESLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG+ G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGSFGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVA 270
            +PPRPFANG +APSPIPAIRPPPPQGVA
Sbjct: 241 PVPPRPFANGAMAPSPIPAIRPPPPQGVA 269

[Close]

BLAST of Carg15507 vs. TAIR10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 440.7 bits (1132), Expect = 9.4e-124
Identity = 223/261 (85.44%), Postives = 234/261 (89.66%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQ YGFIE+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASDAAIE+M GQYL 
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHTLFA GPP+     Q NG  
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 240

Query: 241 GTLMPPRPFANGGIAPSPIPA 260
                PRPFANG + P PIPA
Sbjct: 241 -----PRPFANGSMQPVPIPA 253

[Close]

BLAST of Carg15507 vs. TAIR10
Match: AT4G34110.1 (poly(A) binding protein 2)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-31
Identity = 73/164 (44.51%), Postives = 105/164 (64.02%), Query Frame = 0


Query: 24  DATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAI 83
           + + YVG+LD  V++  L++ F Q G VV V V +D VT    GYG++ F + +DA  AI
Sbjct: 35  NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94

Query: 84  KVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 143
           + LN I LYGKPIRV  + +D      GA N+FI NLD  +D K L+DTFS+FG IV + 
Sbjct: 95  QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIV-SC 154

Query: 144 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 187
           K+  D  +G S+G+GF+ Y + E++  AIE +NG  L ++Q+ V
Sbjct: 155 KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196

[Close]

BLAST of Carg15507 vs. TAIR10
Match: AT1G49760.1 (poly(A) binding protein 8)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 71/175 (40.57%), Postives = 109/175 (62.29%), Query Frame = 0


Query: 28  YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLN 87
           YVG+LD  V++  L+E F QAG VV+V V +D  T    GYG++ + + +DA  A+  LN
Sbjct: 48  YVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107

Query: 88  MIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 147
            + L G+ IRV  + +D      G  N+FI NLD  +D K L++TFSAFG I+ + K+  
Sbjct: 108 FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL-SCKVAV 167

Query: 148 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS---YAYKKDTKGER 199
           DP +G S+G+GF+ YD+ EA+  AI+ +NG  L ++Q+ V    +  ++D  GE+
Sbjct: 168 DP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220

[Close]

BLAST of Carg15507 vs. TAIR10
Match: AT1G22760.1 (poly(A) binding protein 3)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-28
Identity = 65/189 (34.39%), Postives = 114/189 (60.32%), Query Frame = 0


Query: 18  APERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEE 77
           A + + +++ Y G+LDP+V+E  L++LF     VV+V V +D+      GY +I F +  
Sbjct: 42  ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPN 101

Query: 78  DADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFG 137
           DA  A++ LN   L+ +PIR+  +++D  + L    N+FI NLD  +D K L++TFS+FG
Sbjct: 102 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 161

Query: 138 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 197
            I+ + K+  D  TG S+G+GF+ ++  E++ AAI+ +NG  + ++Q+ V +  ++  + 
Sbjct: 162 TIL-SCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERA 221

Query: 198 ERHGTPAER 206
               TP  R
Sbjct: 222 RDENTPTPR 227

[Close]

BLAST of Carg15507 vs. TAIR10
Match: AT1G71770.1 (poly(A)-binding protein 5)

HSP 1 Score: 122.5 bits (306), Expect = 5.7e-28
Identity = 64/177 (36.16%), Postives = 110/177 (62.15%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           + + +++ YVG+LDP V+E  L +LF Q  PV N+ V +D +T+   GY ++ F + EDA
Sbjct: 54  QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDA 113

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 139
             A++ LN   +  +PIR+  +++D  + L    N+FI NLD  +D K LY+TFS+FG I
Sbjct: 114 SRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTI 173

Query: 140 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 196
           + + K+  D   G S+G+GF+ ++  E + AAI+ +NG  L ++Q+ V +  ++  +
Sbjct: 174 L-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 227

[Close]

BLAST of Carg15507 vs. Swiss-Prot
Match: sp|Q15427|SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 4.8e-93
Identity = 168/228 (73.68%), Postives = 193/228 (84.65%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPP 245
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234

[Close]

BLAST of Carg15507 vs. Swiss-Prot
Match: sp|Q8QZY9|SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 4.8e-93
Identity = 168/228 (73.68%), Postives = 193/228 (84.65%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPP 245
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234

[Close]

BLAST of Carg15507 vs. Swiss-Prot
Match: sp|Q6AYL5|SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 4.8e-93
Identity = 168/228 (73.68%), Postives = 193/228 (84.65%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE LLWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDA
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK++NMIKLYGKPIRVNKAS   K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERH
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPP 245
           G+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234

[Close]

BLAST of Carg15507 vs. Swiss-Prot
Match: sp|Q09442|SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2)

HSP 1 Score: 316.6 bits (810), Expect = 3.7e-85
Identity = 163/252 (64.68%), Postives = 193/252 (76.59%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           ERNQDAT YVG LD +VSE +LWEL VQAGPVV+V +PKDRVT  HQG+GF+EF  EEDA
Sbjct: 8   ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
           DYAIK+LNMIKLYGKPI+VNKAS  +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68  DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127

Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
             PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187

Query: 200 GTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIAPSPI 259
           GT AER+LAA NP   K RPH +F+  P  +P    P    G        A G       
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVP-ANTPLAMPGVHAAIAAHATGR------ 247

Query: 260 PAIRPPPPQGVA 270
           P  +PPP  G+A
Sbjct: 248 PGYQPPPLMGMA 252

[Close]

BLAST of Carg15507 vs. Swiss-Prot
Match: sp|O14102|SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 8.6e-66
Identity = 121/208 (58.17%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 20  ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDA 79
           +RNQDAT Y+GNLD +V++ +L+EL +QAGPVVN+++P+DRV N H G+GF EF  E+D 
Sbjct: 6   DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65

Query: 80  DYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 139
           +YA ++LN +KL+GKPIRVN+ASQD+  +  +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66  EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125

Query: 140 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 199
           V  P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 185

Query: 200 HGTPAERVLAASNPQKSRPHTLFASGPP 227
           HG  AER LAA+  +     T  ++ PP
Sbjct: 186 HGDIAERKLAAAAKKNKVAVTPQSTLPP 212

[Close]

BLAST of Carg15507 vs. TrEMBL
Match: tr|A0A1S3AYG3|A0A1S3AYG3_CUCME (splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 2.8e-146
Identity = 260/269 (96.65%), Postives = 263/269 (97.77%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVA 270
            +PPRPFANG I P+PIPAIRP PPQGVA
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 269

[Close]

BLAST of Carg15507 vs. TrEMBL
Match: tr|A0A0A0LAZ0|A0A0A0LAZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 2.8e-146
Identity = 260/269 (96.65%), Postives = 263/269 (97.77%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGT 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G 
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGAIGA 240

Query: 241 LMPPRPFANGGIAPSPIPAIRPPPPQGVA 270
            +PPRPFANG I P+PIPAIRP PPQGVA
Sbjct: 241 PVPPRPFANGAITPNPIPAIRPSPPQGVA 269

[Close]

BLAST of Carg15507 vs. TrEMBL
Match: tr|A0A061DMF9|A0A061DMF9_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_000425 PE=4 SV=1)

HSP 1 Score: 526.6 bits (1355), Expect = 4.8e-146
Identity = 262/296 (88.51%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDP++GNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPESGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QKSRPHTLFAS PP+LP   Q NG +
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPNAQKSRPHTLFASAPPSLPSGPQANGAI 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMP 295
           G  +PPRPFANG + P P+P +RPPPPQ V FPPMQ+PGQ P WQGQPQQ GQ +P
Sbjct: 241 GAPVPPRPFANGTVPPGPMPVLRPPPPQSVPFPPMQVPGQAP-WQGQPQQPGQPIP 295

[Close]

BLAST of Carg15507 vs. TrEMBL
Match: tr|A0A2P6SFK1|A0A2P6SFK1_ROSCH (Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0348441 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 8.1e-146
Identity = 262/289 (90.66%), Postives = 272/289 (94.12%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF+GNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFVGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLLYDTFSAFGVIVTNPKIMRDP+TGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPHTLFASGPPTLPKVAQPNGTMG 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  KSRPHTLFASGPPTLP  +Q NGTMG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTSKSRPHTLFASGPPTLPNGSQANGTMG 240

Query: 241 TLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQ 289
             +PPRPFANGG+ P  IP +RP PPQG+AFPPMQM  Q P WQGQPQQ
Sbjct: 241 APVPPRPFANGGVGPGLIPPLRPQPPQGMAFPPMQMAVQ-PTWQGQPQQ 288

[Close]

BLAST of Carg15507 vs. TrEMBL
Match: tr|A0A2C9WDS3|A0A2C9WDS3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G141500 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 1.1e-145
Identity = 263/295 (89.15%), Postives = 275/295 (93.22%), Query Frame = 0


Query: 1   MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
           MTT+IAPGVGANLLGQH+ ERNQDATAYVGNLDPQV+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1   MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60

Query: 61  VTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
           VTNLHQGYGF+EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61  VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120

Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
           PDVDEKLL+DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
Sbjct: 121 PDVDEKLLHDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180

Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTM 240
           NRQITVSYAYKKDTKGERHGTPAERVLAASNP  QKSRPHTLFASGPPTLP + Q NGT+
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPSSQKSRPHTLFASGPPTLPSMPQANGTV 240

Query: 241 GTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIM 294
           G  +PPRPFANG +AP+PIPA+RP      AFPPMQ+ GQ PAWQGQP Q GQ M
Sbjct: 241 GAPVPPRPFANGAVAPAPIPALRPXXXXXAAFPPMQVAGQ-PAWQGQPPQPGQTM 294

The following BLAST results are available for this feature:

BLAST of Carg15507 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948089.1	8.8e-168	100.00	splicing factor 3B subunit 4-like [Cucurbita moschata]	[more]
XP_023540813.1	8.8e-168	100.00	splicing factor 3B subunit 4 [Cucurbita pepo subsp. pepo]	[more]
XP_022972146.1	2.5e-167	99.66	splicing factor 3B subunit 4-like [Cucurbita maxima]	[more]
XP_022138265.1	1.8e-160	96.95	splicing factor 3B subunit 4 [Momordica charantia]	[more]
XP_022955618.1	8.5e-147	97.03	splicing factor 3B subunit 4-like [Cucurbita moschata]	[more]

BLAST of Carg15507 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18510.1	9.4e-124	85.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G34110.1	9.4e-31	44.51	poly(A) binding protein 2	[more]
AT1G49760.1	1.2e-30	40.57	poly(A) binding protein 8	[more]
AT1G22760.1	2.6e-28	34.39	poly(A) binding protein 3	[more]
AT1G71770.1	5.7e-28	36.16	poly(A)-binding protein 5	[more]

BLAST of Carg15507 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q15427\|SF3B4_HUMAN	4.8e-93	73.68	Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1	[more]
sp\|Q8QZY9\|SF3B4_MOUSE	4.8e-93	73.68	Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1	[more]
sp\|Q6AYL5\|SF3B4_RAT	4.8e-93	73.68	Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1	[more]
sp\|Q09442\|SF3B4_CAEEL	3.7e-85	64.68	Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV...	[more]
sp\|O14102\|SAP49_SCHPO	8.6e-66	58.17	Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Carg15507 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYG3\|A0A1S3AYG3_CUCME	2.8e-146	96.65	splicing factor 3B subunit 4 OS=Cucumis melo OX=3656 GN=LOC103483958 PE=4 SV=1	[more]
tr\|A0A0A0LAZ0\|A0A0A0LAZ0_CUCSA	2.8e-146	96.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G172960 PE=4 SV=1	[more]
tr\|A0A061DMF9\|A0A061DMF9_THECC	4.8e-146	88.51	RNA-binding family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_000425 PE...	[more]
tr\|A0A2P6SFK1\|A0A2P6SFK1_ROSCH	8.1e-146	90.66	Putative nucleotide-binding alpha-beta plait domain-containing protein OS=Rosa c...	[more]
tr\|A0A2C9WDS3\|A0A2C9WDS3_MANES	1.1e-145	89.15	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G141500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034159	SF3B4_RRM2
IPR034158	SF3B4_RRM1
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15507-RA	Carg15507-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 313..329 score: 32.94 coord: 226..242 score: 30.59 coord: 289..310 score: 28.18 coord: 357..380 score: 30.0 coord: 251..263 score: 30.77 coord: 334..351 score: 27.78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..279
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..380
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..380
None	No IPR available	PANTHER	PTHR44799	FAMILY NOT NAMED	coord: 19..378
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 26..99 e-value: 2.2E-25 score: 100.3 coord: 113..187 e-value: 1.4E-24 score: 97.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 114..184 e-value: 2.7E-20 score: 71.8 coord: 28..97 e-value: 1.3E-19 score: 69.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 112..191 score: 17.268
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 25..103 score: 18.564
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 107..200 e-value: 2.5E-25 score: 91.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 17..106 e-value: 3.8E-28 score: 99.5
IPR034158	SF3B4, RNA recognition motif 1	CDD	cd12334	RRM1_SF3B4	coord: 28..100 e-value: 9.16856E-54 score: 173.164
IPR034159	SF3B4, RNA recognition motif 2	CDD	cd12335	RRM2_SF3B4	coord: 111..193 e-value: 1.75542E-61 score: 193.665
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 25..195

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15507	Csa3G172960	Cucumber (Chinese Long) v2	carcuB0714
Carg15507	MELO3C006787	Melon (DHL92) v3.5.1	carmeB0693
Carg15507	CSPI03G15680	Wild cucumber (PI 183967)	carcpiB0728
Carg15507	Cucsa.251850	Cucumber (Gy14) v1	carcgyB0776
Carg15507	CmaCh06G016120	Cucurbita maxima (Rimu)	carcmaB0974
Carg15507	CmaCh14G015210	Cucurbita maxima (Rimu)	carcmaB0972
Carg15507	CmoCh06G016050	Cucurbita moschata (Rifu)	carcmoB0947
Carg15507	CmoCh14G015570	Cucurbita moschata (Rifu)	carcmoB0946
Carg15507	Cp4.1LG08g05600	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15507	CsGy3G015760	Cucumber (Gy14) v2	carcgybB0691
Carg15507	MELO3C006787.2	Melon (DHL92) v3.6.1	carmedB0706
Carg15507	CsaV3_3G015880	Cucumber (Chinese Long) v3	carcucB0731

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15507	Carg24792	Silver-seed gourd	carcarB579

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15507	Wax gourd	carwgoB0817
Carg15507	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15507	Bottle gourd (USVL1VR-Ls)	carlsiB633
Carg15507	Watermelon (Charleston Gray)	carwcgB0668
Carg15507	Watermelon (97103) v1	carwmB0692
Carg15507	Watermelon (97103) v2	carwmbB0720