MELO3C006742 (gene) Melon (DHL92) v3.5.1

NameMELO3C006742
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLYR motif-containing 5A
Locationchr6 : 5634966 .. 5637451 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCTTCAAATCAAATTCGGGAGTTTCGTTTGATTCTTGTTCGATTTTCTTCATCCTTTCCCTCTTTTTCCATACTCAAGCTCGTCACAAGCCACCAAGAGGAGCCGCCGGAGGAGGTAATAGATCTTTTATCTTGAATCCTTTTCATATTTAGTCACATATTCCGCTTCTTCGTGGACGAACTTCCCACGAGAAAGAGAACGATAAACCTGAAGGAACAGAAGGCAGAGATTAATGAGAATAATTAGAATAGACCCATTATGGCTGTATGAAATGGAATGATTGGGTGTGGGAGTCTTTAGTTGATCCAGCTTGAATTTATTAGTAACTTTCAATTTTATGTTTCAGCCGTAATAACTGTTTTCTTCCGTTTGATCCTTGTCTTTTTGACTCTTTGGTAGTTTCTCGTTGTAGCGAACTAATCATTTTAATGAATACAGAAGGTGTGTTAGTGAAACGGGCGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGGTTGGTCCCCCTCCTATCCATTTTTTGCAATACAATTTTCTCCTCAAATTTTCTTAACTTTACATGTTGTATCATTGCAGCTTTACCGCGAGTGCCTTCGAAGGGCCAAGTTTGTTGGTCATCGGGTATGGATGTTCCCTTTGTTTTTTTTTATTTTATCTAATCCAATGGCCCCATTCGAGTAATTTTGCATTTGAATAATTTAAAAAGGTTACTGATTCAATGAGAAGTGAAAAGTTAAAGCTTAATACTCCAGGTTAATTGCAATTATCCAATCAATGAGTTCATTCGTTTATTTCTTTATTTGCCATTTGGGTACTGTGCTGCATCAAGCCTATAGTTGAATTCGTGCAGGACATAACCTTACTGCAAAGCTATGTTCTCACTATTCATATCAATCAGTCAAAATATGACTATAGGAATTGAACAATCCACCGAAACATAGTATTTTGTATGTAAAAGCGCCTTTGCTACCTGCCTCCCATGATCATGTTTTAAGTATTTCCAGTGGCTAGGTTGTTGCGCTGGATGTAGAATGATTGCAGACTTGTTAATGGCAATGGAGTTTTAGATATTGGTACAACGAAAGACTATAGAGTTATTCTAAGAAGTTCATATTTTGTTTCTACTAACGTCAAGATTTACTAGTCAAGAAATATACATTACAAGTAGATATTTCTTCACCTTATTTAATGCTAATAATGCTTATAAGTCAAGGACGCAGTTGTACAACCTATAGAATAGATCTTGTTCAAGTAAGGTCATTAATGCTAATAATTTTCTGTATAAAGTTCACAATATTAGGTGTAAAATGGAAATCCCTATTCATTTCACCCGCACTTCAAAGTTAGAAATGATTTGAAAATTAATTGACGCACTCCATCTTGTTGACTGTGATATTAGGTTTCCTCTTTCCTTGACTGTATCCTCTCTTTTTTGCTGAATTAGGTTATAGTTCTTATCTGTTTTGACTTAAAAAATTGTGCTCACATTTCAAATTAGTTGTACCCAGTTACAGGAAGGTGTAGAGGATTCGACATTGGTTCTTTGACACTTGTTAAACTTGAATCCTATCAACTTCTTGCAGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGAGTATGTCTTATGATTGCCTTTTTTCCCTTGTTTCGTTCCTTCTCTTTTTCCACACTCTCTTTCGCAGCCGGAAGTCATATTAAAAAGAAATTTGTAGAAGAATACAAGTAGGAAAGGCATCCGATCAAACCCAAAGTGAAGAGACCACATTTATATTTTCTGATTAGAACTTGTGTGGGTATGGCCCTCACATTTCTGTGTATATAATTGTTTGTTTGCAGGGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTCAAAAATTGAGCCAAAGTTCTTGATGTTATATCGAAAATGACATTGAGTGAAAGTTCACCATTGGAACTTCAGTCAGACATTGTAGGAATAAGATGGCTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCGTTTCCTTGTTTATTTCTACTATTTGTTCAGAAATCGTCAAATTCTACGGTAGTTGGTGAACGTTTTTCCATCTACAATCTACATTTTATTGCGGAAAGTGGATGTCCAAGGAAGATATGGCATATTGCACATCTCTGATGTCGGGTTCTCTTTTTTAGTGTCTGTTGGTTTCGTGCACTTTGACTATTTTCGTGGAATTTTTTACTACACTCACCTAGTTGTTAAGGTAACTTAGACTATTATATCTTGTATGGATGGTTACTATGGTTTAAACTCGTTGTTTTTTAAGTTTTGTATGATTGGTATTTTTTTTTATGAGATTTATTATGGTAATTGTTAATGGAAATCCAAGGAGAAGAATTGTCGCCTTT

mRNA sequence

ACTCTTCAAATCAAATTCGGGAGTTTCGTTTGATTCTTGTTCGATTTTCTTCATCCTTTCCCTCTTTTTCCATACTCAAGCTCGTCACAAGCCACCAAGAGGAGCCGCCGGAGGAGAAGGTGTGTTAGTGAAACGGGCGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGGGCCAAGTTTGTTGGTCATCGGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGAGGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTCAAAAATTGAGCCAAAGTTCTTGATGTTATATCGAAAATGACATTGAGTGAAAGTTCACCATTGGAACTTCAGTCAGACATTGTAGGAATAAGATGGCTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCGTTTCCTTGTTTATTTCTACTATTTGTTCAGAAATCGTCAAATTCTACGGTAGTTGGTGAACGTTTTTCCATCTACAATCTACATTTTATTGCGGAAAGTGGATGTCCAAGGAAGATATGGCATATTGCACATCTCTGATGTCGGGTTCTCTTTTTTAGTGTCTGTTGGTTTCGTGCACTTTGACTATTTTCGTGGAATTTTTTACTACACTCACCTAGTTGTTAAGGTAACTTAGACTATTATATCTTGTATGGATGGTTACTATGGTTTAAACTCGTTGTTTTTTAAGTTTTGTATGATTGGTATTTTTTTTTATGAGATTTATTATGGTAATTGTTAATGGAAATCCAAGGAGAAGAATTGTCGCCTTT

Coding sequence (CDS)

ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGGGCCAAGTTTGTTGGTCATCGGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGAGGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTCAAAAATTGAGCCAAAGTTCTTGA

Protein sequence

MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKIQKMKDEAARGLINHMLYEHERMSGQKLSQSS*
BLAST of MELO3C006742 vs. TrEMBL
Match: A0A0A0L5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171030 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-40
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 1

Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDEAARGLINHMLYEHERMSGQKLSQSS 92
           KMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

BLAST of MELO3C006742 vs. TrEMBL
Match: A0A067K6T1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19060 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-38
Identity = 78/91 (85.71%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTEL+V MVRQQFK+NMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELLVGMVRQQFKRNMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINHMLYE E +SG+KLS+S+
Sbjct: 61 QKLKDDAARGLINHMLYESEALSGRKLSKST 91

BLAST of MELO3C006742 vs. TrEMBL
Match: A0A061EP84_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_021451 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 2.8e-38
Identity = 77/91 (84.62%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GH+QHNT L+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINH+LYE E+MSG+K S+SS
Sbjct: 61 QKLKDDAARGLINHILYESEQMSGRKFSKSS 91

BLAST of MELO3C006742 vs. TrEMBL
Match: D7T656_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00430 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-38
Identity = 76/91 (83.52%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+++GH+QHNTEL+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARYIGHQQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINH+LYE E+MSG+K S+ S
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKKS 91

BLAST of MELO3C006742 vs. TrEMBL
Match: A0A0D2RGQ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G070100 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.2e-38
Identity = 76/91 (83.52%), Postives = 87/91 (95.60%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GH+QHNT L+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINH+LYE E++SG+K S SS
Sbjct: 61 QKLKDDAARGLINHILYESEKLSGRKFSNSS 91

BLAST of MELO3C006742 vs. TAIR10
Match: AT3G17300.1 (AT3G17300.1 unknown protein)

HSP 1 Score: 152.9 bits (385), Expect = 9.5e-38
Identity = 71/91 (78.02%), Postives = 83/91 (91.21%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQT+LPPELANNV+RLYRECLRRAKF+G +QHNTEL+V MVRQQFKK+M+ETDPEKI
Sbjct: 1  MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINHML+E  +++G K+SQ S
Sbjct: 61 QKLKDDAARGLINHMLFESAKLTGGKVSQRS 91

BLAST of MELO3C006742 vs. NCBI nr
Match: gi|659077016|ref|XP_008438986.1| (PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QKMKDEAARGLINHMLYEHERMSGQKLSQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

BLAST of MELO3C006742 vs. NCBI nr
Match: gi|449459784|ref|XP_004147626.1| (PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 91

BLAST of MELO3C006742 vs. NCBI nr
Match: gi|700202062|gb|KGN57195.1| (hypothetical protein Csa_3G171030 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-40
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 1

Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDEAARGLINHMLYEHERMSGQKLSQSS 92
           KMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

BLAST of MELO3C006742 vs. NCBI nr
Match: gi|720047728|ref|XP_010270901.1| (PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-39
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+F+GHRQHNTEL+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINH+LYE E+MSG+K S SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

BLAST of MELO3C006742 vs. NCBI nr
Match: gi|802706580|ref|XP_012084152.1| (PREDICTED: uncharacterized protein LOC105643598 isoform X2 [Jatropha curcas])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-38
Identity = 78/91 (85.71%), Postives = 88/91 (96.70%), Query Frame = 1

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTEL+V MVRQQFK+NMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELLVGMVRQQFKRNMHETDPEKI 60

Query: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 92
          QK+KD+AARGLINHMLYE E +SG+KLS+S+
Sbjct: 61 QKLKDDAARGLINHMLYESEALSGRKLSKST 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L5F6_CUCSA1.8e-4092.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171030 PE=3 SV=1[more]
A0A067K6T1_JATCU1.3e-3885.71Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19060 PE=3 SV=1[more]
A0A061EP84_THECC2.8e-3884.62Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_021451 PE=3 SV=1[more]
D7T656_VITVI3.7e-3883.52Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00430 PE=3 SV=... [more]
A0A0D2RGQ3_GOSRA6.2e-3883.52Uncharacterized protein OS=Gossypium raimondii GN=B456_005G070100 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G17300.19.5e-3878.02 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659077016|ref|XP_008438986.1|2.2e-44100.00PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo][more]
gi|449459784|ref|XP_004147626.1|9.3e-4395.60PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus][more]
gi|700202062|gb|KGN57195.1|2.5e-4092.22hypothetical protein Csa_3G171030 [Cucumis sativus][more]
gi|720047728|ref|XP_010270901.1|3.6e-3986.81PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera][more]
gi|802706580|ref|XP_012084152.1|1.8e-3885.71PREDICTED: uncharacterized protein LOC105643598 isoform X2 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006486 protein glycosylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0008378 galactosyltransferase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006742T1MELO3C006742T1mRNA
MELO3C006742T2MELO3C006742T2mRNA