CSPI03G15260 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G15260
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Complex 1 protein, LYR family protein
Location	Chr3 : 11416853 .. 11419042 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACCTCAGTCTTCTCTATCGACCAACTCTTCAAATTCGGGAGCTTCGTTGATTCTTGTTCGATTTTCTTCATCCTCTCCCTCTTTTTCCATACTCAAGCTCGTAAGAGGCCACCAAGAGGAGCCGCGGGAGAAGGTAATAGATCTTCTATCTTGAATCCTTTTCATATTTAGTCAAATTTTTGCTTTATTTGTTCAATTTCATAAAAAGTTAAGAGTGTCATTTGTATTATGATCAATGTTTAGCACTCATAATGATTTACGACATTAACTAGCCTCTATTCTGCTTCTTCGTGGACGAACTTCCCACGAGAAGGAGAACGATGAACCTGTGGGAACAGAAGGCAGAGATTAATGAGAATAATTAGAATAGACCCGTTATGGCTGTATCAAATGGAATGATTGTATGTGAGAGTTTTTTGTTTAAAATTGGAGATGATTTCTCAGTTGATCTAGCTTGAATTTAGTAGTAACTTTCAATTATGTTTCAGCCATAAAAACTGTTTTCTTCCGCTTGATCCTTGTCTTTTTAATTCTTCGGTAGTTTTTCGTTGTGGCGAACTAATCATTTTAAAGAATACAGTAGGTGTGTTAGTGAAAAGGGTGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGGTTGGTCCCCCTCCTATCCTTTTTTGTAATACAATTTTCTCCCCAAATTTTCTTAACTTTACATGTTTTATTATTGCAGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGGTATGGACGTGCCCTTTGTTTTTTATTTTATCTAATCCAATGGCCCCATTCTAGTAATCTTGCATTTGAATAATTTAAAAAGGTTACTGATCCAATGAGAAGTGAAAAGTTAAAGTTTAATGCTCCGGGTTAATTGCAATTATCCAATCAATGAGTTCATTCGTTTATTTCTTTATTTGCCATTTGGGTATTGTACTGCATCAAGCCTATAGTTGAATTCATGCAGGACATAACCTTACTGTACAGCTATGATCTTATTATTCATATAAATCAGCCAAAATATTACTATAGGAATTGAACAATCGACCGTAACATAGAATTTTGTATGAAAAACTGAACTGCCTTTTGCTATCTGCCTCCCATGATCATGTTTTATATCCAATGGAAAAGTACTTCCAGTGGCTAGGTTGTTGCGATTGATGTAGAAAAGGATTCTTCAAATCGATGTAAGGTCATTAATGCTAATAATTTTCTGTATAAAGTTCACAATATTAGGTGCAAAATGGAAATTCCTATTCATTTCACCCGCACTTCAAAGTTAGAAATGATTTGAAGATTAATTGACGCACTTCATCTTGTTGACTGTGATATTAGGCTTCCTCTTCTTTTTTGCTGAATTAGGTTATAGTTCTCATCTGTTTTGACTTAAAATTTTGTGCTCACATTTCAAATTAGTTGTACCCAGTTACAGGAAGGTGTAGAGGATTCGACATTGGTTCTTTGACACTTGTTAAACTTGAATCCTATCAACTTCTTGCAGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGAGTATGTCTTATGATTGCTTTTTTTCCCTTGTTTCGTTCTCCGATCAAACCCTAAGTGAAGAGATCACAATTATATTTTCTGATTAGAACTTGTGTGGGTATACCACTCACATTTCTGTGTATTTATTGTTTGTCTGCAGTGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGATGTTATATCGAAAATGACGTTGAGTTAAAGTTCACCATTGTAGCTTCAGACATTGTAGCAATAAGATGACTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCATTTCCTTGTTTATTTCTACGATTTGTTCAAAGAGATTGTCCATTCTACAGTAGTTGATTTCTACGATTTTTTCGTAGAAATCGTTCATTCTACGGTAGTTGGTGAATGTTTTTTGATCTACAATCTACATTTTGTTTGCCTAAAGTGGATGTTTAAGGAAGATATGACATATTGCTCAACTCTGATGTCGGGTTCTCTTTTTT

mRNA sequence

ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGATGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGA

Coding sequence (CDS)

ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGATGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGA

Homology

[Close]

BLAST of CSPI03G15260 vs. TrEMBL
Match: A0A0A0L5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171030 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.1e-42
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDDAARGLINHMLYEHERMSGKKFSQSS 92
           KMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

[Close]

BLAST of CSPI03G15260 vs. TrEMBL
Match: A0A061EP84_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_021451 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 7.4e-39
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GH+QHNT L+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+SS
Sbjct: 61 QKLKDDAARGLINHILYESEQMSGRKFSKSS 91

[Close]

BLAST of CSPI03G15260 vs. TrEMBL
Match: D7T656_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00430 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.6e-39
Identity = 78/91 (85.71%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+++GH+QHNTEL+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARYIGHQQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+ S
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKKS 91

[Close]

BLAST of CSPI03G15260 vs. TrEMBL
Match: A0A0D2RGQ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G070100 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 78/91 (85.71%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GH+QHNT L+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E++SG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKLSGRKFSNSS 91

[Close]

BLAST of CSPI03G15260 vs. TrEMBL
Match: A0A0B0PE40_GOSAR (LYR motif-containing 5A OS=Gossypium arboreum GN=F383_29391 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 78/91 (85.71%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GH+QHNT L+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E++SG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKLSGRKFSNSS 91

[Close]

BLAST of CSPI03G15260 vs. TAIR10
Match: AT3G17300.1 (AT3G17300.1 unknown protein)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-37
Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQT+LPPELANNV+RLYRECLRRAKF+G +QHNTEL+V MVRQQFKK+M+ETDPEKI
Sbjct: 1  MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINHML+E  +++G K SQ S
Sbjct: 61 QKLKDDAARGLINHMLFESAKLTGGKVSQRS 91

[Close]

BLAST of CSPI03G15260 vs. NCBI nr
Match: gi|449459784|ref|XP_004147626.1| (PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 91

[Close]

BLAST of CSPI03G15260 vs. NCBI nr
Match: gi|659077016|ref|XP_008438986.1| (PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

[Close]

BLAST of CSPI03G15260 vs. NCBI nr
Match: gi|700202062|gb|KGN57195.1| (hypothetical protein Csa_3G171030 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDDAARGLINHMLYEHERMSGKKFSQSS 92
           KMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

[Close]

BLAST of CSPI03G15260 vs. NCBI nr
Match: gi|720047728|ref|XP_010270901.1| (PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 171.0 bits (432), Expect = 9.6e-40
Identity = 81/91 (89.01%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+F+GHRQHNTEL+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

[Close]

BLAST of CSPI03G15260 vs. NCBI nr
Match: gi|1009172195|ref|XP_015867140.1| (PREDICTED: uncharacterized protein LOC107404673 [Ziziphus jujuba])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 79/91 (86.81%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTEL+V+MVRQQFKK+ HETDP+KI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELLVEMVRQQFKKHKHETDPDKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINHMLYE E++SG+KFSQSS
Sbjct: 61 QKLKDDAARGLINHMLYESEKVSGRKFSQSS 91

The following BLAST results are available for this feature:

BLAST of CSPI03G15260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G15260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5F6_CUCSA	7.1e-42	96.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171030 PE=3 SV=1	[more]
A0A061EP84_THECC	7.4e-39	86.81	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_021451 PE=3 SV=1	[more]
D7T656_VITVI	9.6e-39	85.71	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00430 PE=3 SV=...	[more]
A0A0D2RGQ3_GOSRA	1.6e-38	85.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G070100 PE=3 SV=1	[more]
A0A0B0PE40_GOSAR	1.6e-38	85.71	LYR motif-containing 5A OS=Gossypium arboreum GN=F383_29391 PE=3 SV=1	[more]

BLAST of CSPI03G15260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17300.1	2.8e-37	79.12	unknown protein	[more]

BLAST of CSPI03G15260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459784\|ref\|XP_004147626.1\|	3.8e-44	100.00	PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus]	[more]
gi\|659077016\|ref\|XP_008438986.1\|	3.5e-42	95.60	PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo]	[more]
gi\|700202062\|gb\|KGN57195.1\|	1.0e-41	96.67	hypothetical protein Csa_3G171030 [Cucumis sativus]	[more]
gi\|720047728\|ref\|XP_010270901.1\|	9.6e-40	89.01	PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera]	[more]
gi\|1009172195\|ref\|XP_015867140.1\|	1.1e-38	86.81	PREDICTED: uncharacterized protein LOC107404673 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0008378	galactosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G15260.1	CSPI03G15260.1	mRNA
CSPI03G15260.2	CSPI03G15260.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..69 score: 6.1
None	No IPR available	PANTHER	PTHR13166	PROTEIN C6ORF149	coord: 5..85 score: 3.0
None	No IPR available	PANTHER	PTHR13166:SF13	SUBFAMILY NOT NAMED	coord: 5..85 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G15260	Cla021819	Watermelon (97103) v1	cpiwmB231
CSPI03G15260	Csa3G171030	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G15260	MELO3C006742	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G15260	ClCG05G006780	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G15260	Lsi05G013980	Bottle gourd (USVL1VR-Ls)	cpilsiB208
CSPI03G15260	MELO3C006742.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G15260	CsaV3_3G015430	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G15260	Cla97C05G088400	Watermelon (97103) v2	cpiwmbB209
CSPI03G15260	Bhi01G000809	Wax gourd	cpiwgoB269
CSPI03G15260	Cucsa.252260	Cucumber (Gy14) v1	cgycpiB383
CSPI03G15260	CmaCh06G015790	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G15260	CmoCh06G015740	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G15260	CsGy3G015350	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G15260	Carg25651	Silver-seed gourd	carcpiB0774

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G15260	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G15260	Melon (DHL92) v3.5.1	cpimeB174
CSPI03G15260	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G15260	Cucurbita pepo (Zucchini)	cpecpiB861
CSPI03G15260	Melon (DHL92) v3.6.1	cpimedB165
CSPI03G15260	Silver-seed gourd	carcpiB0310
CSPI03G15260	Wax gourd	cpiwgoB253
CSPI03G15260	Cucurbita maxima (Rimu)	cmacpiB255