CsGy3G015350 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G015350
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	COMPLEX 1 LYR-like protein
Location	Chr3 : 11369911 .. 11372560 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTTTATGCACTATCTCTCCTTCAACTCTTTGGTTTTTTTTTCATTTCGGCCAAAACGTTCGGTCGGTTCAGATTACAATCCCGGTCGGTTCAAGTTCACAATCTGAACCGAAATGAACCAAGCCAATTACGCCCAAACCCCAAATGAACGTGTTCCTTCTTAACCTCAGTCTTCTCTATCGACCAACTCTTCAAATTCGGGAGCTTCGTTGATTCTTGTTCGATTTTCTTCATCCTCTCCCTCTTTTTCCATACTCAAGCTCGTAAGAGGCCACCAAGAGGAGCCGCGGGAGAAGGTAATAGATCTTCTATCTTGAATCCTTTTCATATTTAGTCAAATTTTTGCTTTATTTGTTCAATTTCATAAAAAGTTAAGAGTGTCATTTGTATTATGATCAATGTTTAGCACTCATAATGATTTACGACATTAACTAGCCTCTATTCTGCTTCTTCGTGGACGAACTTCCCACGAGAAGGAGAACGATGAACCTGTGGGAACAGAAGGCAGAGATTAATGAGAATAATTAGAATAGACCCGTTATGGCTGTATCAAATGGAATGATTGTATGTGAGAGTTTTTTGTTTAAAATTGGAGATGATTTCTCAGTTGATCTAGCTTGAATTTAGTAGTAACTTTCAATTATGTTTCAGCCACAAAAACTGTTTTCTTCCGCTTGATCCTTGTCTTTTTAATTCTTCGGTAGTTTTTCGTTGTAGCGAACTAATCATTTTAATGAATACAGTAGGTGTGTTAGTGAAAAGGGTGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGGTTGGTCCCCCTCCTATCCTTTTTTGTAATACAATTTTCTCCTCAAATTTTCTTAACTTTACATGTTTTATTATTGCAGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGGTATGGACGTGCCCTTTGTTTTTTATTTTATCTAATCCAATGGCCCCATTCTAGTAATCTTGCATTTGAATAATTTAAAAAGGTTACTGATCCAATGAGAAGTGAAAAGTTAAAGTTTAATGCTCCGGGTTAATTGCAATTATCCAATCAATGAGTTCATTCGTTTATCTCTTTATTTGCCATTTGGGTATTGTACTGCATCAAGCCTATAGTTGAATTCATGCAGGACATAACCTTACTGTACAGCTATGATCTTATTATTCATATAAATCAGCCAAAATATTACTATAGGAATTGAACAATCGACCGTAACATAGAATTTTGTATGAAAAACTGAACTGCCTTTTGCTATCTGCCTCCCATGATCATGTTTTATATCCAATGGAAAAGTACTTCCAGTGGCTAGGTTGTTGCGATTGATGTAGAAAAGGATTATTCAAATCGATGTAAGGTCATTAATGCTAATAATTTTCTGTATAAAGTTCACAATATTAGGTGCAAAATGGAAATTCCTATTCATTTCACCCGCACTTCAAAGTTAGAAATGATTTGAAGATTAATTGACGCACTTCATCTTGTTGACTGTGATATTAGGCTTCCTCTTCTTTTTTGCTGAATTAGGTTATAGTTCTCATCTGTTTTGACTTAAAATTTTGTGCTCACATTTCAAATTAGTTGTACCCAGTTACAGGAAGGTGTAGAGGATTCGACATTGGTTCTTTGACACTTGTTAAACTTGAATCCTATCAACTTCTTGCAGCAACATAACACCGAGCTTATTATCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGAGTATGTCTTATGATTGCTTTTTTTCCCTTGTTTCGTTCGTTCTCCTTTTCCCCACTCTTTCACAGTTGGAAGTCATATTAAAAAGAAAATTTTAGAAGAAACAATTAGGAAAAATATCCGATCAAACCCTAAGTGAAGAGATCACAATTATATTTTCTGATTAGAACTTGTGTGGGTATAGCACTCACATTTCTGTGTATTTATTGTTTGTCTGCAGTGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGATGTTATATCGAAAATGACGTTGAGTTAAAGTTCACCATTGTAGCTTCAGACATTGTAGCAATAAGATGACTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCATTTCCTTGTTTATTTCTACGATTTGTTCAAAGAGATTGTCCATTCTACAGTAGTTGATTTCTACGATTTTTTCGTAGAAATCGTTCATTCTACGGTAGTTGGTGAATGTTTTTCGATCTACAATCTACATTTTGTTTGCGTAAAGTGGATGTTTAAGGAAGATATGACATATTGCTCAACTCTGATGTCGGGTTCTCTTTTTTAGTGTCTGGGTTGGTTTCATGCACTTTAACTATATTCTCCAGGAATTTTTTACTTTTACTCACATAGTTGTTAAGGTAACTTAGAATATTATATCTTATATAGATGGTTACTCGGGTTTAAAGTCATTTAAGTTCTTTATGATTGGTATTTATAGATGTTTGGATTAATCCGTTGTGGTGGTTCTTATTATGGCAATTGTTAATGGAAATCCAATGAGAAATTGAGAAGAATAATTG

mRNA sequence

GTTTTTTTATGCACTATCTCTCCTTCAACTCTTTGGTTTTTTTTTCATTTCGGCCAAAACGTTCGGTCGGTTCAGATTACAATCCCGGTCGGTTCAAGTTCACAATCTGAACCGAAATGAACCAAGCCAATTACGCCCAAACCCCAAATGAACGTGTTCCTTCTTAACCTCAGTCTTCTCTATCGACCAACTCTTCAAATTCGGGAGCTTCGTTGATTCTTGTTCGATTTTCTTCATCCTCTCCCTCTTTTTCCATACTCAAGCTCGTAAGAGGCCACCAAGAGGAGCCGCGGGAGAAGTAGGTGTGTTAGTGAAAAGGGTGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGCAACATAACACCGAGCTTATTATCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGATGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGATGTTATATCGAAAATGACGTTGAGTTAAAGTTCACCATTGTAGCTTCAGACATTGTAGCAATAAGATGACTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCATTTCCTTGTTTATTTCTACGATTTGTTCAAAGAGATTGTCCATTCTACAGTAGTTGATTTCTACGATTTTTTCGTAGAAATCGTTCATTCTACGGTAGTTGGTGAATGTTTTTCGATCTACAATCTACATTTTGTTTGCGTAAAGTGGATGTTTAAGGAAGATATGACATATTGCTCAACTCTGATGTCGGGTTCTCTTTTTTAGTGTCTGGGTTGGTTTCATGCACTTTAACTATATTCTCCAGGAATTTTTTACTTTTACTCACATAGTTGTTAAGGTAACTTAGAATATTATATCTTATATAGATGGTTACTCGGGTTTAAAGTCATTTAAGTTCTTTATGATTGGTATTTATAGATGTTTGGATTAATCCGTTGTGGTGGTTCTTATTATGGCAATTGTTAATGGAAATCCAATGAGAAATTGAGAAGAATAATTG

Coding sequence (CDS)

ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGCAACATAACACCGAGCTTATTATCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGATGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGA

Protein sequence

MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKIQKMKDDAARGLINHMLYEHERMSGKKFSQSS

Homology

[Close]

BLAST of CsGy3G015350 vs. NCBI nr
Match: XP_004147626.1 (PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus] >XP_011651093.1 PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELI+DMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 91

[Close]

BLAST of CsGy3G015350 vs. NCBI nr
Match: XP_008438986.1 (PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo] >XP_008438987.1 PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-41
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELI+DMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

[Close]

BLAST of CsGy3G015350 vs. NCBI nr
Match: KGN57195.1 (hypothetical protein Csa_3G171030 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 4.4e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKFLGHRQHNTELI+DMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDDAARGLINHMLYEHERMSGKKFSQSS 92
           KMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

[Close]

BLAST of CsGy3G015350 vs. NCBI nr
Match: XP_010270901.1 (PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-39
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+F+GHRQHNTEL++DMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

[Close]

BLAST of CsGy3G015350 vs. NCBI nr
Match: XP_023921329.1 (uncharacterized protein LOC112032794 [Quercus suber] >XP_023921330.1 uncharacterized protein LOC112032794 [Quercus suber] >XP_023921331.1 uncharacterized protein LOC112032794 [Quercus suber] >POE99249.1 hypothetical protein CFP56_66793 [Quercus suber])

HSP 1 Score: 169.1 bits (427), Expect = 7.0e-39
Identity = 79/91 (86.81%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTEL++DMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+S+
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKSA 91

[Close]

BLAST of CsGy3G015350 vs. TAIR10
Match: AT3G17300.1 (unknown protein)

HSP 1 Score: 150.2 bits (378), Expect = 6.1e-37
Identity = 71/91 (78.02%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQT+LPPELANNV+RLYRECLRRAKF+G +QHNTEL++ MVRQQFKK+M+ETDPEKI
Sbjct: 1  MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINHML+E  +++G K SQ S
Sbjct: 61 QKLKDDAARGLINHMLFESAKLTGGKVSQRS 91

[Close]

BLAST of CsGy3G015350 vs. TrEMBL
Match: tr|A0A1S3AYB1|A0A1S3AYB1_CUCME (uncharacterized protein LOC103483919 OS=Cucumis melo OX=3656 GN=LOC103483919 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-41
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELI+DMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

[Close]

BLAST of CsGy3G015350 vs. TrEMBL
Match: tr|A0A0A0L5F6|A0A0A0L5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171030 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKFLGHRQHNTELI+DMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDDAARGLINHMLYEHERMSGKKFSQSS 92
           KMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

[Close]

BLAST of CsGy3G015350 vs. TrEMBL
Match: tr|A0A1U8AWB6|A0A1U8AWB6_NELNU (uncharacterized protein LOC104607091 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104607091 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.7e-39
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+F+GHRQHNTEL++DMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

[Close]

BLAST of CsGy3G015350 vs. TrEMBL
Match: tr|A0A2P4L1U2|A0A2P4L1U2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66793 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.6e-39
Identity = 79/91 (86.81%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTEL++DMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+S+
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKSA 91

[Close]

BLAST of CsGy3G015350 vs. TrEMBL
Match: tr|A0A061EP84|A0A061EP84_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_021451 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.0e-38
Identity = 78/91 (85.71%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIIDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GH+QHNT L++DMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+SS
Sbjct: 61 QKLKDDAARGLINHILYESEQMSGRKFSKSS 91

The following BLAST results are available for this feature:

BLAST of CsGy3G015350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147626.1	1.6e-43	98.90	PREDICTED: uncharacterized protein LOC101203751 [Cucumis sativus] >XP_011651093....	[more]
XP_008438986.1	1.5e-41	94.51	PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo] >XP_008438987.1 P...	[more]
KGN57195.1	4.4e-41	95.56	hypothetical protein Csa_3G171030 [Cucumis sativus]	[more]
XP_010270901.1	4.1e-39	87.91	PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera]	[more]
XP_023921329.1	7.0e-39	86.81	uncharacterized protein LOC112032794 [Quercus suber] >XP_023921330.1 uncharacter...	[more]

BLAST of CsGy3G015350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17300.1	6.1e-37	78.02	unknown protein	[more]

BLAST of CsGy3G015350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G015350 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYB1\|A0A1S3AYB1_CUCME	1.0e-41	94.51	uncharacterized protein LOC103483919 OS=Cucumis melo OX=3656 GN=LOC103483919 PE=...	[more]
tr\|A0A0A0L5F6\|A0A0A0L5F6_CUCSA	2.9e-41	95.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171030 PE=3 SV=1	[more]
tr\|A0A1U8AWB6\|A0A1U8AWB6_NELNU	2.7e-39	87.91	uncharacterized protein LOC104607091 isoform X2 OS=Nelumbo nucifera OX=4432 GN=L...	[more]
tr\|A0A2P4L1U2\|A0A2P4L1U2_QUESU	4.6e-39	86.81	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66793 PE=3 SV=1	[more]
tr\|A0A061EP84\|A0A061EP84_THECC	3.0e-38	85.71	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_021451 PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G015350.1	CsGy3G015350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..69 e-value: 7.4E-12 score: 45.0
None	No IPR available	PANTHER	PTHR13166:SF13	SUBFAMILY NOT NAMED	coord: 7..90
None	No IPR available	PANTHER	PTHR13166	PROTEIN C6ORF149	coord: 7..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G015350	Cla021819	Watermelon (97103) v1	cgybwmB217
CsGy3G015350	Csa3G171030	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G015350	MELO3C006742	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G015350	ClCG05G006780	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G015350	CSPI03G15260	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G015350	CmaCh06G015790	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G015350	CmoCh06G015740	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G015350	Lsi05G013980	Bottle gourd (USVL1VR-Ls)	cgyblsiB197
CsGy3G015350	MELO3C006742.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G015350	CsaV3_3G015430	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G015350	Cla97C05G088400	Watermelon (97103) v2	cgybwmbB196
CsGy3G015350	Bhi01G000809	Wax gourd	cgybwgoB257

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G015350	Wax gourd	cgybwgoB240
CsGy3G015350	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G015350	Cucurbita maxima (Rimu)	cgybcmaB345
CsGy3G015350	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G015350	Cucurbita moschata (Rifu)	cgybcmoB317
CsGy3G015350	Cucurbita pepo (Zucchini)	cgybcpeB303
CsGy3G015350	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G015350	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G015350	Bottle gourd (USVL1VR-Ls)	cgyblsiB136
CsGy3G015350	Melon (DHL92) v3.5.1	cgybmeB149
CsGy3G015350	Melon (DHL92) v3.6.1	cgybmedB148
CsGy3G015350	Watermelon (Charleston Gray)	cgybwcgB230
CsGy3G015350	Silver-seed gourd	carcgybB0072
CsGy3G015350	Silver-seed gourd	carcgybB0294
CsGy3G015350	Silver-seed gourd	carcgybB0736