Cla97C05G088400 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G088400
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Complex 1 LYR protein
Location	Cla97Chr05 : 6578914 .. 6580421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTCTACAGACTGCTTTGCCTCCTGAGCTTGCAAATAATGTCATTAGGGTTGGTTCCCTCCTATCCTTTTTTGCAATACAATTTCCTCCACAAAATTTCTTAGCTTTGCACGTCTTATCACTGCAGCTTTACCGCGAGTGCCTTCGAAGAGCTAAGTATATTGGTCATCAGGTATGGATGTTCTCTTTGTTTGTTTCTTATTTTATCTAATCCAATGGTCCCAAAGAGGTGTTATGATTCTAGTAATCTTGCATTTGAATAATTTAGATAGGTTACTGAGCCAATGAGAAGTGAAAAGTTAAAAGTTCAATACAGCCTTTGCAATTATCCAATCATTGAGTTCATTCACTTATTTCTTTTACTTGCCATTTGGATCCTATGCATCAAGCCTATGGTTGAATTCATGCAGGACATAACCTTACCTCACAGTTATGTTCTCATTCTTCATATTAATCAGCCAAAATCTCACTATAGGAATTGAACAATTGATCGCAACATAGTATTTTGTATGTAAAAGCGCCTTTTGCTACCTGCCTACTTCCCAGGGTTACATTTTTGCCTCACAAGAAAAATGTCCAATGGTGTGAATGAGAAGGGTTAGGATAAAGTATTTCCAGAGGCTAGGTTGTTGCGCTTGATGTAGAATGATTGTGGACTCATTATCGCAATGGAGTTTTTAGATATTGGTACAACAAAATACTATAGAGTTATTCTAAGTTCATATTTTGTTTCTTCTAACGTGAGGATTTATTAGTCAGGAAATATACATTACAACTTGACATTTCTTTACCTTATGTAATGCTAAGGATTCTCTCTATGAAGATTACAATCTCATTTGCATATATGTGCAAAATGGAAAATCCTATTGATTTCAGCTCATGCTTCAAAATTAGGAATGATTGGAAGATTGATTCATGTTGTTGACTGATATTAGGCTTCCTCTATCCTTGGCTGTATCCTTTCTTTGTTGCTGAATTAAGTTATAGTTCTTATCTGTTTTGGCGTAAAAAATTGTGCTCACATTTCAAATTAGTTGTATCCAGTTATAGGAAGGTCTAGAGGATTTAACATTGGTTCCTTGAAACTTGTTAATCCTATCAACTCCTTGCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGAGTATGTCTTAATTGCTTCTCCCTTGTTTCTTTCGTTCTCTTTTTCCCTTTTCTCTTTCACAGAAGAAACTTAGGCTAAAAAGAAATATTTACAAGAATCAAATAGCAAAAGGCATCTACCAAACCCAAAGTTAATAGATTAAATTTATATTTTCTGATTAGGAATTGTTTGGGCATAGCACTCACATTTCTGTGTATATATTGCTTGTTTGCAGTGCTGCTAGGGGACTTATAAACCATATTCTATATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA

mRNA sequence

ATGCCATCTCTACAGACTGCTTTGCCTCCTGAGCTTGCAAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGAGCTAAGTATATTGGTCATCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA

Coding sequence (CDS)

ATGCCATCTCTACAGACTGCTTTGCCTCCTGAGCTTGCAAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGAGCTAAGTATATTGGTCATCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA

Protein sequence

MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

Homology

[Close]

BLAST of Cla97C05G088400 vs. NCBI nr
Match: XP_022138283.1 (uncharacterized protein LOC111009499 [Momordica charantia] >XP_022138284.1 uncharacterized protein LOC111009499 [Momordica charantia])

HSP 1 Score: 175.6 bits (444), Expect = 7.5e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTEL+V+MVRQQFRKNM ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELVVSMVRQQFRKNMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESER+SGRKFSQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLSGRKFSQSS 91

[Close]

BLAST of Cla97C05G088400 vs. NCBI nr
Match: XP_022972196.1 (uncharacterized protein LOC111470803 [Cucurbita maxima] >XP_023540322.1 uncharacterized protein LOC111800735 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-38
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNT+L+V+MV+QQFRKNM ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTDLVVSMVKQQFRKNMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESER++GRK SQSS
Sbjct: 61 QKLKDDAARGLINHILYESERLTGRKLSQSS 91

[Close]

BLAST of Cla97C05G088400 vs. NCBI nr
Match: XP_006466529.1 (uncharacterized protein LOC102622612 [Citrus sinensis] >XP_024036476.1 uncharacterized protein LOC18035888 [Citrus clementina])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGHQ+HNTELLV MVRQQF++N  ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQKHNTELLVNMVRQQFKRNKHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QK+KDDAARGLINHILYESER+SGRKFS+SS
Sbjct: 61 QKMKDDAARGLINHILYESERLSGRKFSKSS 91

[Close]

BLAST of Cla97C05G088400 vs. NCBI nr
Match: XP_002263820.1 (PREDICTED: uncharacterized protein LOC100258064 [Vitis vinifera] >CBI25977.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+YIGHQQHNTEL+V MVRQQF+K+M ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARYIGHQQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESE+MSGRKFS+ S
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKKS 91

[Close]

BLAST of Cla97C05G088400 vs. NCBI nr
Match: XP_021642928.1 (uncharacterized protein LOC110637229 isoform X1 [Hevea brasiliensis])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 81/91 (89.01%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANN IRLYRECLRRAKYIGH+QHNT+LL+ MVRQQF+KNM ETDPEKI
Sbjct: 1  MPSLQTALPPELANNAIRLYRECLRRAKYIGHRQHNTQLLIDMVRQQFKKNMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESE+MSGRKFS+S+
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKST 91

[Close]

BLAST of Cla97C05G088400 vs. TrEMBL
Match: tr|A0A2P4L1U2|A0A2P4L1U2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66793 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNTEL+V MVRQQF+K+M ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESE+MSGRKFS+S+
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKSA 91

[Close]

BLAST of Cla97C05G088400 vs. TrEMBL
Match: tr|D7T656|D7T656_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g00430 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+YIGHQQHNTEL+V MVRQQF+K+M ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARYIGHQQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESE+MSGRKFS+ S
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKKS 91

[Close]

BLAST of Cla97C05G088400 vs. TrEMBL
Match: tr|A0A2I4HK32|A0A2I4HK32_9ROSI (uncharacterized protein LOC109018787 OS=Juglans regia OX=51240 GN=LOC109018787 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.3e-38
Identity = 81/90 (90.00%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNTELLV MVRQQF++NM+ETDPE+I
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELLVDMVRQQFKRNMQETDPERI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQS 91
          QKLKDDAARGLINHILYESE++SGRKFS+S
Sbjct: 61 QKLKDDAARGLINHILYESEKISGRKFSKS 90

[Close]

BLAST of Cla97C05G088400 vs. TrEMBL
Match: tr|A0A061EP84|A0A061EP84_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_021451 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGH+QHNT L+V MVRQQF+K+M ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHKQHNTALVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESE+MSGRKFS+SS
Sbjct: 61 QKLKDDAARGLINHILYESEQMSGRKFSKSS 91

[Close]

BLAST of Cla97C05G088400 vs. TrEMBL
Match: tr|A9PBV0|A9PBV0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.9e-38
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLV MVRQQF++N  ETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVNMVRQQFKRNKHETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINHILYESER+SGRK S+S+
Sbjct: 61 QKLKDDAARGLINHILYESERLSGRKASKST 91

[Close]

BLAST of Cla97C05G088400 vs. TAIR10
Match: AT3G17300.1 (unknown protein)

HSP 1 Score: 150.2 bits (378), Expect = 6.1e-37
Identity = 73/91 (80.22%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQQHNTELLVTMVRQQFRKNMRETDPEKI 60
          MPSLQT+LPPELANNV+RLYRECLRRAK+IG QQHNTEL+V MVRQQF+K+M ETDPEKI
Sbjct: 1  MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 61 QKLKDDAARGLINHILYESERMSGRKFSQSS 92
          QKLKDDAARGLINH+L+ES +++G K SQ S
Sbjct: 61 QKLKDDAARGLINHMLFESAKLTGGKVSQRS 91

The following BLAST results are available for this feature:

BLAST of Cla97C05G088400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138283.1	7.5e-41	95.60	uncharacterized protein LOC111009499 [Momordica charantia] >XP_022138284.1 uncha...	[more]
XP_022972196.1	1.2e-38	90.11	uncharacterized protein LOC111470803 [Cucurbita maxima] >XP_023540322.1 uncharac...	[more]
XP_006466529.1	1.6e-38	90.11	uncharacterized protein LOC102622612 [Citrus sinensis] >XP_024036476.1 uncharact...	[more]
XP_002263820.1	2.0e-38	90.11	PREDICTED: uncharacterized protein LOC100258064 [Vitis vinifera] >CBI25977.3 unn...	[more]
XP_021642928.1	2.0e-38	89.01	uncharacterized protein LOC110637229 isoform X1 [Hevea brasiliensis]	[more]

BLAST of Cla97C05G088400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4L1U2\|A0A2P4L1U2_QUESU	1.3e-38	90.11	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_66793 PE=3 SV=1	[more]
tr\|D7T656\|D7T656_VITVI	1.3e-38	90.11	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g00430 PE=3 SV=...	[more]
tr\|A0A2I4HK32\|A0A2I4HK32_9ROSI	2.3e-38	90.00	uncharacterized protein LOC109018787 OS=Juglans regia OX=51240 GN=LOC109018787 P...	[more]
tr\|A0A061EP84\|A0A061EP84_THECC	3.9e-38	90.11	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_021451 PE=3 ...	[more]
tr\|A9PBV0\|A9PBV0_POPTR	3.9e-38	90.11	Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]

BLAST of Cla97C05G088400 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G088400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17300.1	6.1e-37	80.22	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G088400.1	Cla97C05G088400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 15..70 e-value: 7.2E-13 score: 48.3
None	No IPR available	PANTHER	PTHR13166:SF13	SUBFAMILY NOT NAMED	coord: 7..90
None	No IPR available	PANTHER	PTHR13166	PROTEIN C6ORF149	coord: 7..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G088400	Cla021819	Watermelon (97103) v1	wmwmbB206
Cla97C05G088400	Csa3G171030	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G088400	MELO3C006742	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G088400	ClCG05G006780	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G088400	CSPI03G15260	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G088400	Cucsa.252260	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G088400	CmaCh06G015790	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G088400	CmoCh06G015740	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G088400	Lsi05G013980	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G088400	CsGy3G015350	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G088400	MELO3C006742.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G088400	CsaV3_3G015430	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G088400	Bhi01G000809	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G088400	Watermelon (97103) v2	wmbwmbB137
Cla97C05G088400	Silver-seed gourd	carwmbB0069
Cla97C05G088400	Silver-seed gourd	carwmbB0287
Cla97C05G088400	Silver-seed gourd	carwmbB0776
Cla97C05G088400	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G088400	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G088400	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G088400	Cucurbita moschata (Rifu)	cmowmbB351
Cla97C05G088400	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G088400	Melon (DHL92) v3.6.1	medwmbB114
Cla97C05G088400	Melon (DHL92) v3.5.1	mewmbB123
Cla97C05G088400	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G088400	Wax gourd	wgowmbB076