MELO3C006598 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006598
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding protein 1
Location	chr6 : 4457026 .. 4462148 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCTCACCGATCATGTCATGGGTGGACGTTTAAATCTTGAAGCGGTAGGGTTTAGGGCATGATTTTATCTCCAACCCGATCGTCTCCTTCCCTCCCTCCAAAATATTCGAAGCCCATCATTAGACTCATTTTCCTTCTCCCAAATTCCCATTAGGGTTAGGGTTCTCACTGCTTCAGTTTCCGAGTAAGACACGCTAATAACCCACTATGGCGAGGTACCGGAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGGCGGAAGAGGTATGACGATGACCCTCGAGACCGTTACCGCGAAAGCAGGTCTCATAGGGACCGTCGTTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTTCCGCTTGATGCTAGGTATTTCATGTTCTTCTTCGAGCTTTCTATGTTATTGATAATGTCTCGCGTTATTATTTTGATGGAGGAATTGAATGCCTCATTTGCTTTCATGTTTTTGTACATACTAGTGCACTTTTGTTTAGAATCTGGAATTTTGGGCAGGCTGTAAAGGGGTTTACCGTATGAATTTTGATTAGTAGGCATGTGAAGAGTTGATCAAAAAGAGCATTTGTTGCAAGTAATTTACTGTCAAGCCGTGTGCTATCGTGCTACATTGCATTATTTTCTCATTTCCCGTAGTCTATCCATTCTATTTACGAAGAGGAACGATTGAGTGTTTGCATTGTATACCATGCAGGCCTGAAGATCTTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGTATGGCCGCTTTCATGTTAACATGTGCGCTCTTGGGTGTTGAAGAAATCACTTTATTATTTCCTGGTATTTTTTTCTCTTAATTATCGGGATATCCACACTAGATAACAGATTTTTGGCTATATTAGTTATGGAAGAAAACAGTTGAGAAAATCTTTGAGATTAAGTTGTGGGATCATAATTTCGGAGCACTGCTGAAGTTTTAACGATTAAATTTCCTTTACCATCATGTAATTATTTGGTTAAGATCGACAACAAGTCAATCTGAAAGAATGAAGGGTAAGTTTGCTGCATATAGAAGGAATCTGCAAATTTATCGGTTAACCTGAACTTTGTTTGTACTTAATCCTAGAAAGGATGAATTGACTGACAAGGAATTATTTGTAGGGGAATGATGTGTTTGTTAGTCTATAATAGCAGTGGTCAACAAGAAAGAAATTCTTGAAGCGTGTGTGAATTAGTTGAGTTGACAGTGGCTCTACATTAAATATGTGTCTAAAACTTAATACTGCCTGGCAACCCTTTCTGGTTATTACTTATTACAGAGATCTACTTTGCTTTCTCTCTCATTATGATATCTACTTAGCCTTCTCTCTCATTATGATATCATTCTCTTTATTGCCTATTTGTAGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGATGCGGCTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTATTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACGTCACGCTCAAGGTTCAATGACCTTCCTCTTAACCTCTAATCTTGCAGTATCGTTTGGTTGAATATCTTCTCCATGAAACCAGTATCTTTAACTTTGATCTATTATATTGATAGTCTCTTGTTTCTCATATACAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGATATCGTTGTTAGTGTCAATACATTTATCTTTTTTCTTTCTTTCTTTTTTGCTGACTTTCATGAAAATAATTGCATTGGCTTGATGATCTTTGATGTTATCATCGTGATGCAATATTGTAATTACACCCTTAATTTTTATTCTCAAGAAGCCTTTTGTATTTGACTGCAGCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGTTGGATCTTATTTATCATACTTGTTTTACTTCTAGCAAGACTAACATCATTATTGTCCTGCTTTTTTCCATCACTTCTTACTTCTGTACATTACTATGAATTTTGGTCGTTCCTGTCTTGATGTTTACTTGTTTAGTAAGCTGCACATGCCTTCTTTGAATTTTATAATTTAGTACTGTAACATGTCAAAGCATTCTTTTTGGATGAGAAGCATTGTATAATATTTTTGAAATTTTGTACTTGTCTTATATAGAATACCCAAACGCCAAACCCCCAAAA

mRNA sequence

AAATCTCACCGATCATGTCATGGGTGGACGTTTAAATCTTGAAGCGGTAGGGTTTAGGGCATGATTTTATCTCCAACCCGATCGTCTCCTTCCCTCCCTCCAAAATATTCGAAGCCCATCATTAGACTCATTTTCCTTCTCCCAAATTCCCATTAGGGTTAGGGTTCTCACTGCTTCAGTTTCCGAGTAAGACACGCTAATAACCCACTATGGCGAGGTACCGGAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGGCGGAAGAGGTATGACGATGACCCTCGAGACCGTTACCGCGAAAGCAGGTCTCATAGGGACCGTCGTTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTTCCGCTTGATGCTAGGCCTGAAGATCTTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGATGCGGCTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTATTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACGTCACGCTCAAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGATATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGTTGGATCTTATTTATCATACTTGTTTTACTTCTAGCAAGACTAACATCATTATTGTCCTGCTTTTTTCCATCACTTCTTACTTCTGTACATTACTATGAATTTTGGTCGTTCCTGTCTTGATGTTTACTTGTTTAGTAAGCTGCACATGCCTTCTTTGAATTTTATAATTTAGTACTGTAACATGTCAAAGCATTCTTTTTGGATGAGAAGCATTGTATAATATTTTTGAAATTTTGTACTTGTCTTATATAGAATACCCAAACGCCAAACCCCCAAAA

Coding sequence (CDS)

ATGGCGAGGTACCGGAGCCGGAGCAGAAGTTACAGCCCTCGCCGGCGTAGTAGAACCCCACCACGCGGGCGGAAGAGGTATGACGATGACCCTCGAGACCGTTACCGCGAAAGCAGGTCTCATAGGGACCGTCGTTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTTCCGCTTGATGCTAGGCCTGAAGATCTTAGGATCCCGTTTGAGCGATTTGGTCCTGTTAAGGACGTGTATCTGCCGAAGAACTACTACACTGGGGAGCCTCGAGGATTTGGATTTGTGAAGTTTCGGTTTGCAGAAGATGCGGCTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGACGGGAGATACGAATCGTATTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACGTCACGCTCAAGTGGTAGAAGCTACAGAAGACGTTCTCCAGCAAGGTCTCCGAGACGGCGATATCGTTCTTACTCGCGCTCACCTTCACCTGCCAGGCACGACTCAAGGTTGGATCTTATTTATCATACTTGTTTTACTTCTAGCAAGACTAACATCATTATTGTCCTGCTTTTTTCCATCACTTCTTACTTCTGTACATTACTATGA

Protein sequence

MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRLDLIYHTCFTSSKTNIIIVLLFSITSYFCTLL*

Homology

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BLAST of MELO3C006598 vs. Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.7e-65
Identity = 128/177 (72.32%), Postives = 142/177 (80.23%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD+   R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDN---RLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRRYRS+SRS SP R +SR
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRESR 173

HSP 2 Score: 228.8 bits (582), Expect = 5.5e-59
Identity = 126/201 (62.69%), Postives = 138/201 (68.66%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD+   R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDN---RLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRR---RSPAR--------------------- 170
           I IVFAEENRKTPQEMR T+ +SGR   Y+R   RSP R                     
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKV 180

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BLAST of MELO3C006598 vs. Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 7   RSRSYSPRRRSRTPPRG--RKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPRG  R+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPAR 172
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSPPPRR 153

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BLAST of MELO3C006598 vs. Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.8e-36
Identity = 89/170 (52.35%), Postives = 104/170 (61.18%), Query Frame = 1


Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           EENRK P EMR   R  GR   RRR+P      RY S SRSP P R  SR
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-----RYYSRSRSPPPRRGRSR 157

HSP 2 Score: 30.4 bits (67), Expect = 2.9e+01
Identity = 47/164 (28.66%), Postives = 63/164 (38.41%), Query Frame = 1


Query: 15  RRSRTPPRGRKRYDDDPRDRYRESRSHRDR-RSPAPSGLLVRNLPLDA-RPEDLRIPFER 74
           R+  T  R R+R     RDR R    +  R RSP P     R+   D   P   R     
Sbjct: 116 RKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRS 175

Query: 75  FGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKT 134
             P ++ Y  +  Y+  P   G  + R         + L+ +    R I          +
Sbjct: 176 ISPREERYDGRRSYSRSPASDGS-RGRSLTPVRGKSRSLSPSP--RRSISRSPRRSRSPS 235

Query: 135 PQEMRVTS--RSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 175
           P+  R  S  RS  RS RR   +RSPRR  RSY+  P+ +R  S
Sbjct: 236 PKRNRSVSPRRSISRSPRR---SRSPRRSRRSYTPEPARSRSQS 273

[Close]

BLAST of MELO3C006598 vs. Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.5e-35
Identity = 89/180 (49.44%), Postives = 106/180 (58.89%), Query Frame = 1


Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYGG-RGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTS------------RSSGRSYRRR-SPARSPRR------RYRSYSRSPSPAR 172
           K P+EMRV +            RS GRS  R  S +RSPRR      RYRS S SP+P R
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 187

HSP 2 Score: 30.8 bits (68), Expect = 2.2e+01
Identity = 20/48 (41.67%), Postives = 24/48 (50.00%), Query Frame = 1


Query: 2   ARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAP 50
           +RYRSRS S +PRRR   PPRG    +D+   R   S  +    + AP
Sbjct: 174 SRYRSRSYSPAPRRRG-GPPRGE---EDENYSRRSYSPGYEGAAAAAP 217

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BLAST of MELO3C006598 vs. Swiss-Prot
Match: SRS12_HUMAN (Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.0e-20
Identity = 58/133 (43.61%), Postives = 78/133 (58.65%), Query Frame = 1


Query: 47  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE 106
           P  + L +RN+    RPEDLR  F R+GP+ DVY+P ++YT  PRGF +V+F    DA +
Sbjct: 7   PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66

Query: 107 AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSR--SSGRSYRRRSPARSPRRRYRSYS 166
           A   LN   + GR+I I FA+ +RKTP +M+   R   S   +RR   +RSP +R R+ S
Sbjct: 67  ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRR---SRSPSQR-RTRS 126

Query: 167 RSPSPARHDSRLD 178
           RS S  R+  R D
Sbjct: 127 RSSSWGRNRRRSD 135

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BLAST of MELO3C006598 vs. TrEMBL
Match: M5XS42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 5.7e-87
Identity = 161/178 (90.45%), Postives = 169/178 (94.94%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR---SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SGR   S RRR+P RSPRR+YRSYSRSPSP R DSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSR 178

[Close]

BLAST of MELO3C006598 vs. TrEMBL
Match: M5Y9H7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.8e-86
Identity = 162/179 (90.50%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSR-SSGR---SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SSGR   S RRR+P RSPRR+YRSYSRSPSP R DSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSR 179

[Close]

BLAST of MELO3C006598 vs. TrEMBL
Match: A0A061ENX7_THECC (SC35-like splicing factor 28 isoform 2 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 3.6e-81
Identity = 150/176 (85.23%), Postives = 164/176 (93.18%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M RYRSRSRSYSPRRRSRTP RGRK+Y+DDPRDR+R   SHRDRRSPAPSGLL+RNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPTRGRKKYEDDPRDRHR---SHRDRRSPAPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR+PFER+GPVKDVYLPKNYYTGEPRGFGFVKFR+ EDAAEAKQ++NH VIGGRE
Sbjct: 61  ARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYGEDAAEAKQRMNHQVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR+++R+SGR    RR+P RSPRRRYRSYSRSPSPARHDSR
Sbjct: 121 IRIVFAEENRKTPQEMRLSTRTSGRHGGSRRTPPRSPRRRYRSYSRSPSPARHDSR 173

[Close]

BLAST of MELO3C006598 vs. TrEMBL
Match: A0A061EPS8_THECC (SC35-like splicing factor 28 isoform 1 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.3e-80
Identity = 149/175 (85.14%), Postives = 163/175 (93.14%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M RYRSRSRSYSPRRRSRTP RGRK+Y+DDPRDR+R   SHRDRRSPAPSGLL+RNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPTRGRKKYEDDPRDRHR---SHRDRRSPAPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR+PFER+GPVKDVYLPKNYYTGEPRGFGFVKFR+ EDAAEAKQ++NH VIGGRE
Sbjct: 61  ARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYGEDAAEAKQRMNHQVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRYRSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMR+++R+SGR    RR+P RSPRRRYRSYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRLSTRTSGRHGGSRRTPPRSPRRRYRSYSRSPSPARHDS 172

[Close]

BLAST of MELO3C006598 vs. TrEMBL
Match: A0A067KV64_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02045 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 8.7e-80
Identity = 150/180 (83.33%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDD--PRDRYRESRSHRDRRSPAPSGLLVRNLP 60
           MARYRSRSRSYSPRRRS+TPPR RK Y DD  PRDRYR+SRS+R+RRSPAPSGLLVRNLP
Sbjct: 1   MARYRSRSRSYSPRRRSKTPPRSRKHYYDDVEPRDRYRDSRSYRERRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGG 120
           LDARPEDLR PFE++GPVKDVYLPKNYYTGEPRGFGFVKFR+AEDAAEAKQ++NH +IGG
Sbjct: 61  LDARPEDLRGPFEKYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRMNHRIIGG 120

Query: 121 REIRIVFAEENRKTPQEMRVTSRSSGR---SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           REIRIVFAEENRKTPQEMR +SR SGR   S+R R+P RSPRRR+ SYS+SPSPARHDSR
Sbjct: 121 REIRIVFAEENRKTPQEMRTSSRVSGRYGGSHRGRTPPRSPRRRHHSYSQSPSPARHDSR 180

[Close]

BLAST of MELO3C006598 vs. TAIR10
Match: AT5G18810.1 (AT5G18810.1 SC35-like splicing factor 28)

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-66
Identity = 128/177 (72.32%), Postives = 142/177 (80.23%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD+   R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDN---RLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRRYRS+SRS SP R +SR
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRESR 173

HSP 2 Score: 228.8 bits (582), Expect = 3.1e-60
Identity = 126/201 (62.69%), Postives = 138/201 (68.66%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD+   R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDDN---RLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRR---RSPAR--------------------- 170
           I IVFAEENRKTPQEMR T+ +SGR   Y+R   RSP R                     
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKV 180

[Close]

BLAST of MELO3C006598 vs. TAIR10
Match: AT3G13570.1 (AT3G13570.1 SC35-like splicing factor 30A)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 1


Query: 7   RSRSYSPRRRSRTPPRG--RKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPRG  R+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPAR 172
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSPPPRR 153

[Close]

BLAST of MELO3C006598 vs. TAIR10
Match: AT3G55460.1 (AT3G55460.1 SC35-like splicing factor 30)

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-36
Identity = 89/180 (49.44%), Postives = 106/180 (58.89%), Query Frame = 1


Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYGG-RGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTS------------RSSGRSYRRR-SPARSPRR------RYRSYSRSPSPAR 172
           K P+EMRV +            RS GRS  R  S +RSPRR      RYRS S SP+P R
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 187

HSP 2 Score: 30.8 bits (68), Expect = 1.2e+00
Identity = 20/48 (41.67%), Postives = 24/48 (50.00%), Query Frame = 1


Query: 2   ARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAP 50
           +RYRSRS S +PRRR   PPRG    +D+   R   S  +    + AP
Sbjct: 174 SRYRSRSYSPAPRRRG-GPPRGE---EDENYSRRSYSPGYEGAAAAAP 217

[Close]

BLAST of MELO3C006598 vs. TAIR10
Match: AT1G55310.3 (AT1G55310.3 SC35-like splicing factor 33)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-34
Identity = 87/181 (48.07%), Postives = 102/181 (56.35%), Query Frame = 1


Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG------------EPRGFGFVKFRFAEDAAEAKQQLNHT 126
           R  FE+FGPVKD+YLP++YYTG            +PRGFGFV+F    DAA+AK  ++  
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGY 121

Query: 127 VIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 176
           ++ GRE+ +VFAEENRK P EMR   R  G  +R R   R    RY S SRSP P R  S
Sbjct: 122 LLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDR---RRTPPRYYSRSRSPPPRRGRS 170

HSP 2 Score: 30.4 bits (67), Expect = 1.6e+00
Identity = 50/176 (28.41%), Postives = 64/176 (36.36%), Query Frame = 1


Query: 3   RYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRR--SPAPSGLLVRNLPLD 62
           R R R      R R RTPPR            Y  SRS   RR  S + SG      P  
Sbjct: 135 RARERGGGSRFRDRRRTPPR-----------YYSRSRSPPPRRGRSRSRSGDYYSPPPRR 194

Query: 63  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 122
             P  +        P ++ Y  +  Y+  P   G  + R         + L+ +    R 
Sbjct: 195 HHPRSI-------SPREERYDGRRSYSRSPASDGS-RGRSLTPVRGKSRSLSPSP--RRS 254

Query: 123 IRIVFAEENRKTPQEMRVTS--RSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 175
           I          +P+  R  S  RS  RS RR   +RSPRR  RSY+  P+ +R  S
Sbjct: 255 ISRSPRRSRSPSPKRNRSVSPRRSISRSPRR---SRSPRRSRRSYTPEPARSRSQS 286

[Close]

BLAST of MELO3C006598 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 77.8 bits (190), Expect = 8.8e-15
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 1


Query: 52  LLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQL 111
           LLV N+      +DL   F ++G V DV++P++  TG+ RGF FV++++ ++A +A ++L
Sbjct: 18  LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77

Query: 112 NHTVIGGREIRIVFAE--ENRKTPQEMRV------TSRSSGRSYRR-RSPARS---PRRR 171
           +  V+ GREI + FA+   N +   + RV      + RS  RS RR RSP RS   PRRR
Sbjct: 78  DGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRR 137

Query: 172 YRSYSRSPSPARHD 174
               SRSP     D
Sbjct: 138 SPRRSRSPRRRSRD 151

[Close]

BLAST of MELO3C006598 vs. NCBI nr
Match: gi|659076620|ref|XP_008438778.1| (PREDICTED: serine/arginine-rich splicing factor 33 [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 5.6e-96
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR 175

[Close]

BLAST of MELO3C006598 vs. NCBI nr
Match: gi|449432785|ref|XP_004134179.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 6.2e-95
Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSR 175

[Close]

BLAST of MELO3C006598 vs. NCBI nr
Match: gi|645232904|ref|XP_008223084.1| (PREDICTED: serine/arginine-rich splicing factor 33 isoform X2 [Prunus mume])

HSP 1 Score: 329.3 bits (843), Expect = 4.8e-87
Identity = 161/178 (90.45%), Postives = 169/178 (94.94%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR---SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SGR   S RRR+P RSPRR+YRSYSRSPSP  HDSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVMHDSR 178

[Close]

BLAST of MELO3C006598 vs. NCBI nr
Match: gi|596298726|ref|XP_007227540.1| (hypothetical protein PRUPE_ppa010343mg [Prunus persica])

HSP 1 Score: 328.6 bits (841), Expect = 8.1e-87
Identity = 161/178 (90.45%), Postives = 169/178 (94.94%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR---SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SGR   S RRR+P RSPRR+YRSYSRSPSP R DSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSR 178

[Close]

BLAST of MELO3C006598 vs. NCBI nr
Match: gi|645232902|ref|XP_008223083.1| (PREDICTED: serine/arginine-rich splicing factor 33 isoform X1 [Prunus mume])

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-86
Identity = 162/179 (90.50%), Postives = 170/179 (94.97%), Query Frame = 1


Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSR-SSGR---SYRRRSPARSPRRRYRSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SSGR   S RRR+P RSPRR+YRSYSRSPSP  HDSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVMHDSR 179

The following BLAST results are available for this feature:

BLAST of MELO3C006598 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRC28_ARATH	8.7e-65	72.32	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=...	[more]
SL30A_ARATH	2.0e-37	53.89	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN...	[more]
SRC33_ARATH	3.8e-36	52.35	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=...	[more]
SRC30_ARATH	5.5e-35	49.44	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=...	[more]
SRS12_HUMAN	5.0e-20	43.61	Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1	[more]

BLAST of MELO3C006598 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XS42_PRUPE	5.7e-87	90.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1	[more]
M5Y9H7_PRUPE	2.8e-86	90.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1	[more]
A0A061ENX7_THECC	3.6e-81	85.23	SC35-like splicing factor 28 isoform 2 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=...	[more]
A0A061EPS8_THECC	1.3e-80	85.14	SC35-like splicing factor 28 isoform 1 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=...	[more]
A0A067KV64_JATCU	8.7e-80	83.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02045 PE=4 SV=1	[more]

BLAST of MELO3C006598 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18810.1	4.9e-66	72.32	SC35-like splicing factor 28	[more]
AT3G13570.1	1.1e-38	53.89	SC35-like splicing factor 30A	[more]
AT3G55460.1	3.1e-36	49.44	SC35-like splicing factor 30	[more]
AT1G55310.3	1.3e-34	48.07	SC35-like splicing factor 33	[more]
AT5G64200.1	8.8e-15	38.81	ortholog of human splicing factor SC35	[more]

BLAST of MELO3C006598 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076620\|ref\|XP_008438778.1\|	5.6e-96	100.00	PREDICTED: serine/arginine-rich splicing factor 33 [Cucumis melo]	[more]
gi\|449432785\|ref\|XP_004134179.1\|	6.2e-95	99.43	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus...	[more]
gi\|645232904\|ref\|XP_008223084.1\|	4.8e-87	90.45	PREDICTED: serine/arginine-rich splicing factor 33 isoform X2 [Prunus mume]	[more]
gi\|596298726\|ref\|XP_007227540.1\|	8.1e-87	90.45	hypothetical protein PRUPE_ppa010343mg [Prunus persica]	[more]
gi\|645232902\|ref\|XP_008223083.1\|	2.4e-86	90.50	PREDICTED: serine/arginine-rich splicing factor 33 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000221	Protamine_P1
IPR000504	RRM_dom
IPR003954	RRM_dom_euk
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000221	Protamine_P1
IPR000504	RRM_dom
IPR003954	RRM_dom_euk
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding
GO:0003677	DNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007283	spermatogenesis
GO:0007283	spermatogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006996	organelle organization
biological_process	GO:0007283	spermatogenesis
biological_process	GO:0044763	single-organism cellular process
cellular_component	GO:0016607	nuclear speck
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU54651	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006598T1	MELO3C006598T1	mRNA
MELO3C006598T2	MELO3C006598T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU54651	MU54651	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12 scor
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..122 score: 3.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 score: 1.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 50..128 score: 17
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 51..124 score: 0.
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 17..132 score: 1.1
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 47..153 score: 2.28
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 21..248 score: 1.4E
None	No IPR available	PANTHER	PTHR23147:SF7	SUBFAMILY NOT NAMED	coord: 21..248 score: 1.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006598	Cla021695	Watermelon (97103) v1	mewmB461
MELO3C006598	Cla97C05G087140	Watermelon (97103) v2	mewmbB434
MELO3C006598	Bhi01G000656	Wax gourd	mewgoB549
MELO3C006598	CSPI03G13830	Wild cucumber (PI 183967)	cpimeB230
MELO3C006598	Cucsa.253680	Cucumber (Gy14) v1	cgymeB439
MELO3C006598	CmaCh14G016500	Cucurbita maxima (Rimu)	cmameB242
MELO3C006598	CmaCh06G014560	Cucurbita maxima (Rimu)	cmameB763
MELO3C006598	CmoCh06G014580	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006598	CmoCh14G016940	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006598	Lsi05G014910	Bottle gourd (USVL1VR-Ls)	lsimeB369
MELO3C006598	Cp4.1LG08g04610	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006598	CsGy3G013960	Cucumber (Gy14) v2	cgybmeB200
MELO3C006598	Carg17377	Silver-seed gourd	carmeB0610
MELO3C006598	Carg20148	Silver-seed gourd	carmeB0828
MELO3C006598	CsaV3_3G014050	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006598	Cucurbita pepo (Zucchini)	cpemeB140
MELO3C006598	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006598	Bottle gourd (USVL1VR-Ls)	lsimeB029
MELO3C006598	Cucumber (Gy14) v2	cgybmeB437
MELO3C006598	Silver-seed gourd	carmeB0073
MELO3C006598	Silver-seed gourd	carmeB0332
MELO3C006598	Cucumber (Chinese Long) v3	cucmeB508
MELO3C006598	Watermelon (97103) v2	mewmbB448
MELO3C006598	Wax gourd	mewgoB520
MELO3C006598	Wax gourd	mewgoB529
MELO3C006598	Melon (DHL92) v3.5.1	memeB051
MELO3C006598	Cucumber (Gy14) v1	cgymeB595
MELO3C006598	Cucurbita maxima (Rimu)	cmameB342
MELO3C006598	Cucurbita maxima (Rimu)	cmameB850
MELO3C006598	Cucurbita moschata (Rifu)	cmomeB335
MELO3C006598	Cucurbita moschata (Rifu)	cmomeB832
MELO3C006598	Wild cucumber (PI 183967)	cpimeB498
MELO3C006598	Cucumber (Chinese Long) v2	cumeB236
MELO3C006598	Cucumber (Chinese Long) v2	cumeB496
MELO3C006598	Watermelon (Charleston Gray)	mewcgB427
MELO3C006598	Watermelon (Charleston Gray)	mewcgB442
MELO3C006598	Watermelon (97103) v1	mewmB486