CmoCh14G016940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G016940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSerine/arginine rich splicing factor
LocationCmo_Chr14 : 13315019 .. 13319831 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCACGTCTCACCGGACCATAGGTGGACGTTTAAGTCTTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCTCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCCCAAATCTCCCTAGGGTTAGGGTTTTCTCTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAATCCACTATGGCGAAGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGTATTTCATGTTCTTCTTCGAGCTTCATCTGTTATTGGCAATGTCTCAATTTATTAGATTGATGGACGAATTGAATGGCGCATTTGCTTTCGCGTTTTACATGTAAATGTGCATTTGTCTAGAGTTTTGAATTTTGGGTAGGAGGTATATACGGCTTACCGTATGAATGTTGATTTGTAGTTATATAAATATTTATCAAGAAGAGCATTCGTTGCGTGTAGTCTCTTGTCAAGACGTGTGCAGTCACTCGACATTGTATTATTTTCTCGTTTTCTGTTGTCTATACATTGTATGAATTGTTAAGAGGAATAATTTAGGGTTTTGGTTGCATTTCATGCAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGTATGGTCGCTTTCATGTTAACTTGTGCTCACTTGGGTATTGAAGAAACCGATTTATTATTTCCTGGTACTTCTTTCTCTAATTATCAGGCTATCCACACTAGAAAATAGAGTTTTGCTATATTAGCTAAGAAAGAAAAATTTAAGAAAATTAATAATATTTTTAGATTAAGTTCTGAGTTTAGAATCTCAGAGCACTGTTGGAGTTTCAAAGTTTAAATTGCCTTTATCATTATGTAATTATTTGGCTAAGATTGTTTACAAATCAATATGAGAGTATGAACGGTAACATTTTTGCATATGGAAGGAATCTGCAAATTTGTTGATTAACTTGAGCTTAGTTCACTCTTAATCCTAGAGACGAGGAATTTGATTTTGTTAAACGATATGTTTACTAGTATGTAATGACAGTGATTACCACTTTAGTTCAACCATCTTTTGAATTTAGTTTAAATATAACTGATAATTAAGAAATTCCAAAAAGCGTAAATTAATTGAATTGGCAGTGGTTTGCATTATATTTGGATCTGAAAATTATTATTGCTACTCATATAAGATTGTGTGTTGACTTGTGAGATGTGGCAGCCCTTTCTAGTTTTCATTGGGTCAGAAATGGGTTTATATTTCAGTGTTTTGAATTTGTGGAAGTTTATTAATGTTCTGTTATGAAATATTATAGATATGATCTACTTTGTTCTCTCTCTCTCTCTCACGAGGATATCATTCCCTTCATTGCCTATTTGTAGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACAGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTGTGACTTCACGCTCAAGGTTCTATGACCTTCCTCCTAACTTCTAATCTTGCAGTATCCTTTGGTCTGATTATCTTCTTCACGTAACCTTTATTTTTAATTTTGAATTAATATATTGATAGTCTTTTTCTCGGTGCTCATATATAGTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTGTCAGTGTCAATACTTATCTTGGTTTTTTCTCTCTATTTTGCTGATTTCGTGAAAAGAAACATTTGTATTGGGTTGATGTTGACGTTTGATTAACATCATTGTGATGCAATTTGTAATTACACCTTCATTTTATGCTCAACATGCCTTTTCTATTTGACTGCAGCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTATCTGTCATACTTATTCTGCTACTAGCAAGACTAAAATCATTATTGTCCTGCTGTTTCCGTTACTCCTTACTTCTATACCGTGTTTTGAAATATTGGTTGGTCCTATTATGATGATAAGTAAACTGTGCATGCCTTCTTCTAACTATATAATTTTGTTCTTTAACATGTCAAAGCATTCTTTTTGGATGAGAAACATTGCATAATATTTTGAATTTTGGCACTTGTCTTATAGAGTATTCAAACCTCCAATTGAAGTACATGTTCATTGTTTTGATTTTCAGTCTAACCAAAATGATTTTGTCTGCCATTGGGTGAAAATCAATTTTATAGAAATATTTCAATAAACTCAGCTTACTTCGATTTACTCAACCTGAACCTCATGAGTTCTGTTTTGTTCAAAAAACTTCTTGAAGTTATCAATGGTGTGTCAGTTTTAAAAAGCACGATCCATTTCTAATGGATGAATTATCCTTGTTCCTATGTCATGCGGTGATGTGTTTAGTCAGTAAATCTAAGTGGCGCTTTGCTGTGGTTTCAATTGCTGACTAAATATTAGGGTCATAGTCCAATAATAATAGTGGCACTTTTAATCTTCATTTCCTCATCAGGTTTATAATATCAGCCCAATATATTAAATCTAAGCAACACTTTCATTTTTTTGATGTTCTCCATGCTTTAATGTAGAATTTTATTTCATTTGCTTTAATGTTATCATGGTTAACCAAAAAGATTTAAATTTAATATTTGATTTGATGCACGTGAAATATTCTACTCCCTACATAGTACGGAGTTGCATTGCAGGAGATCGTGTACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGTGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCACTTGCTTACTTTACCTATCGAACCCTCTCCATGAGTATAATCTATTACCTTTTCAATTATCTTAGTTGCATGTTTTTTATTTGTTTGTTGACAATTTTCTTGTGAGCAGAAGTTAAGGATTGGTGAGAGTTTAAAAACAAAATTTATCTCTGGTTTTTTCCCCCCCTTTTCCTCCCTTTCAAATCTCAACGATTTATCAGCAAGAAAGTGATTTGTAAGTTTGATATCTTCTTTTGCATATACCGTCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCAAAGGAGAAAAAGCCAAAGTTTTTCTGGTTGTGGTATGGTGACATTGTCCAAGAAAAGATAATGTGATTTTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATCAGTCTTGAAAATGATGTTGATAGAAAATTGTGCTTATAAAAGTATGATATAGTTAGTATCATAAGTACCTGTTGAGCGTACCTCATTGGGCCTTTGAAGACTGCTTGGACAGGTTTTCTTTCCTGTGTGAGAGAGAGAGTTGTTTGTGTTGTGCTGTTTTGAGTCTGAATGGAAATCGTTTCTGTTTGATTTGTTGATTTATCATTCCATTAATTTTTTCCATTGTTGTGGCTGATGTAGGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTATAGCCGATCTCCAACTCCAAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACACTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGTTCTCGTTCACGTTCCTATAGGTATTTTACCTTTTAAATTCTTTTTTCTGGGCCTCCGGAAGACAAGTCTTCTCATTTCTGATTAAAGAGGCAAGAAGGAAATGACATTCTTCAATGATCTTGTATTTTTGCTCCTTTTCAAGAATTTATTCGATTATATTTTTGTCGATTTATGTTCAAGCTTAATTCAATATGAACTCAGAATGAGATTTGAGAGTGTTTTAGTTAGGGACAGCAAAGTTGTATATGTCGATTTATCGAACATTTCTGGTTCAAAGTATAATGTGCATTGTGTTTAGCCGGTAATAATTTCCATTGGTTGATTGAAAATTTAACACCCTGTCATGTTGCTTCTGCAGTCCTCGCTGATGGATGTGTTTCGGGATCATCCTCGAGATTTGTTAGTCTGCCTTCCGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTCTCAAGTAGTTAACTTCATGTGAGTGCATGCTCTGGTGGACTTCTACTTGACAACCTTTCCTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGTTAAGTTTAGGATGCTCAAATCTTGTTATGGATATTGTCTCGTTTGTTTACCCCAGTTTTGTGTTATTGTTCAGTAATACCATTTTATATCTGTTCTTAAACCTTTTTTGAAATTTCCAAATTTTATTATTAAAACTAGAAACAAA

mRNA sequence

TCCCACGTCTCACCGGACCATAGGTGGACGTTTAAGTCTTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCTCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCCCAAATCTCCCTAGGGTTAGGGTTTTCTCTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAATCCACTATGGCGAAGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACAGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTGTGACTTCACGCTCAAGTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTATCTGTCATACTTATTCTGCTACTAGCAAGACTAAAATCATTATTGTCCTGCTGTTTCCGTTACTCCTTACTTCTATACCGTGTTTTGAAATATTGGAGATCGTGTACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGTGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTATAGCCGATCTCCAACTCCAAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACACTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGTTCTCGTTCACGTTCCTATAGTCCTCGCTGATGGATGTGTTTCGGGATCATCCTCGAGATTTGTTAGTCTGCCTTCCGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTCTCAAGTAGTTAACTTCATGTGAGTGCATGCTCTGGTGGACTTCTACTTGACAACCTTTCCTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGTTAAGTTTAGGATGCTCAAATCTTGTTATGGATATTGTCTCGTTTGTTTACCCCAGTTTTGTGTTATTGTTCAGTAATACCATTTTATATCTGTTCTTAAACCTTTTTTGAAATTTCCAAATTTTATTATTAAAACTAGAAACAAA

Coding sequence (CDS)

ATGGCGAAGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACAGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTGTGACTTCACGCTCAAGTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTATCTGTCATACTTATTCTGCTACTAGCAAGACTAAAATCATTATTGTCCTGCTGTTTCCGTTACTCCTTACTTCTATACCGTGTTTTGAAATATTGGAGATCGTGTACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGTGA
Homology
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BLAST of CmoCh14G016940 vs. Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.0e-58
Identity = 124/176 (70.45%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+ RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           I IVFAEENRKTPQEMR T+ +SGR    +R+  RSPRRRY S+SRS SP R +SR
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESR 173

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BLAST of CmoCh14G016940 vs. Swiss-Prot
Match: SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN=SCL30A PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.5e-33
Identity = 90/167 (53.89%), Postives = 110/167 (65.87%), Query Frame = 1 

Query: 7   RSRSYSPRRRSRTPPRG--RKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPRG  R+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPAR 172
           FAEENRK P EMR   R  GRS+R +   RSP R    YSRSP P R
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSPPPRR 153

[Close]
BLAST of CmoCh14G016940 vs. Swiss-Prot
Match: SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 89/170 (52.35%), Postives = 107/170 (62.94%), Query Frame = 1 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           EENRK P EMR   R  GR   RRR+P      RY+S SRSP P R  SR
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-----RYYSRSRSPPPRRGRSR 157

[Close]
BLAST of CmoCh14G016940 vs. Swiss-Prot
Match: SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.2e-29
Identity = 89/180 (49.44%), Postives = 108/180 (60.00%), Query Frame = 1 

Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYGG-RGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTS------------RSSGRS-SRRRSPARSPRR------RYHSYSRSPSPAR 172
           K P+EMRV +            RS GRS SR  S +RSPRR      RY S S SP+P R
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 187

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BLAST of CmoCh14G016940 vs. Swiss-Prot
Match: SRS12_HUMAN (Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-17
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 1 

Query: 47  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE 106
           P  + L +RN+    RPEDLR  F R+GP+ DVY+P ++YT  PRGF +V+F    DA +
Sbjct: 7   PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66

Query: 107 AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSR-SSGRSSRRRSPARSPRRRYHSYSR 166
           A   LN   + GR+I I FA+ +RKTP +M+   R     S  RRS  RSP +R  + SR
Sbjct: 67  ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRS--RSPSQR-RTRSR 126

Query: 167 SPSPARHDSRLD 178
           S S  R+  R D
Sbjct: 127 SSSWGRNRRRSD 135

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BLAST of CmoCh14G016940 vs. TrEMBL
Match: M5XS42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.5e-80
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR---SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SGR   SSRRR+P RSPRR+Y SYSRSPSP R DSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSR 178

[Close]
BLAST of CmoCh14G016940 vs. TrEMBL
Match: M5Y9H7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.2e-79
Identity = 161/179 (89.94%), Postives = 170/179 (94.97%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSR-SSGR---SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SSGR   SSRRR+P RSPRR+Y SYSRSPSP R DSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSR 179

[Close]
BLAST of CmoCh14G016940 vs. TrEMBL
Match: A0A061ENX7_THECC (SC35-like splicing factor 28 isoform 2 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.1e-74
Identity = 148/176 (84.09%), Postives = 163/176 (92.61%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M +YRSRSRSYSPRRRSRTP RGRK+Y+DDPRDR+R   SHRDRRSPAPSGLL+RNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPTRGRKKYEDDPRDRHR---SHRDRRSPAPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR+PFER+GPVKDVYLPKNYYTGEPRGFGFVKFR+ EDAAEAKQ++NH VIGGRE
Sbjct: 61  ARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYGEDAAEAKQRMNHQVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR+++R+SGR    RR+P RSPRRRY SYSRSPSPARHDSR
Sbjct: 121 IRIVFAEENRKTPQEMRLSTRTSGRHGGSRRTPPRSPRRRYRSYSRSPSPARHDSR 173

[Close]
BLAST of CmoCh14G016940 vs. TrEMBL
Match: A0A061EPS8_THECC (SC35-like splicing factor 28 isoform 1 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.8e-74
Identity = 147/175 (84.00%), Postives = 162/175 (92.57%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M +YRSRSRSYSPRRRSRTP RGRK+Y+DDPRDR+R   SHRDRRSPAPSGLL+RNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPTRGRKKYEDDPRDRHR---SHRDRRSPAPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR+PFER+GPVKDVYLPKNYYTGEPRGFGFVKFR+ EDAAEAKQ++NH VIGGRE
Sbjct: 61  ARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYGEDAAEAKQRMNHQVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDS 175
           IRIVFAEENRKTPQEMR+++R+SGR    RR+P RSPRRRY SYSRSPSPARHDS
Sbjct: 121 IRIVFAEENRKTPQEMRLSTRTSGRHGGSRRTPPRSPRRRYRSYSRSPSPARHDS 172

[Close]
BLAST of CmoCh14G016940 vs. TrEMBL
Match: A0A151STA7_CAJCA (35 kDa SR repressor protein OS=Cajanus cajan GN=KK1_004323 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.0e-73
Identity = 152/182 (83.52%), Postives = 161/182 (88.46%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           M +YRSRSRSYSPRRRSRTPPRGRKRY DD   RY +SRS+RDRRSP PSGLLVRNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPPRGRKRYVDD---RYADSRSYRDRRSPLPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+ EDAAEAKQ LNHT+IGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-----SSRRRSPARSPRRRYHSYSRSPSPARHDSR 178
           IRIVFAEENRKTPQEMRV SR SGR       RRR+ +RSPRRRYHSYSRSPSPAR DSR
Sbjct: 121 IRIVFAEENRKTPQEMRVNSRGSGRYGGGGGGRRRNRSRSPRRRYHSYSRSPSPARDDSR 179

[Close]
BLAST of CmoCh14G016940 vs. TAIR10
Match: AT5G18810.1 (AT5G18810.1 SC35-like splicing factor 28)

HSP 1 Score: 225.7 bits (574), Expect = 2.8e-59
Identity = 124/176 (70.45%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+ RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR-SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           I IVFAEENRKTPQEMR T+ +SGR    +R+  RSPRRRY S+SRS SP R +SR
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESR 173

[Close]
BLAST of CmoCh14G016940 vs. TAIR10
Match: AT3G13570.1 (AT3G13570.1 SC35-like splicing factor 30A)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-34
Identity = 90/167 (53.89%), Postives = 110/167 (65.87%), Query Frame = 1 

Query: 7   RSRSYSPRRRSRTPPRG--RKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     +PPRG  R+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPAR 172
           FAEENRK P EMR   R  GRS+R +   RSP R    YSRSP P R
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSPPPRR 153

[Close]
BLAST of CmoCh14G016940 vs. TAIR10
Match: AT3G55460.1 (AT3G55460.1 SC35-like splicing factor 30)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 89/180 (49.44%), Postives = 108/180 (60.00%), Query Frame = 1 

Query: 11  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYGG-RGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTS------------RSSGRS-SRRRSPARSPRR------RYHSYSRSPSPAR 172
           K P+EMRV +            RS GRS SR  S +RSPRR      RY S S SP+P R
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 187

[Close]
BLAST of CmoCh14G016940 vs. TAIR10
Match: AT1G55310.3 (AT1G55310.3 SC35-like splicing factor 33)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 89/181 (49.17%), Postives = 107/181 (59.12%), Query Frame = 1 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRYGGRSRD----LPTSLLVRNLRHDCRQEDL 61

Query: 67  RIPFERFGPVKDVYLPKNYYTG------------EPRGFGFVKFRFAEDAAEAKQQLNHT 126
           R  FE+FGPVKD+YLP++YYTG            +PRGFGFV+F    DAA+AK  ++  
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGY 121

Query: 127 VIGGREIRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDS 176
           ++ GRE+ +VFAEENRK P EMR   R  G  SR R   R+P  RY+S SRSP P R  S
Sbjct: 122 LLLGRELTVVFAEENRKKPTEMRARERGGG--SRFRDRRRTP-PRYYSRSRSPPPRRGRS 170

[Close]
BLAST of CmoCh14G016940 vs. TAIR10
Match: AT2G21440.1 (AT2G21440.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-14
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 52  LLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQL 111
           L++RNLP  A+P D+++ F   G V DV++PKN+ TG P+GF FVKF   +DAA A ++ 
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 112 NHTVIGGREIRIVFA 127
           N  + G R I + +A
Sbjct: 393 NGHMFGKRPIAVDWA 407

[Close]
BLAST of CmoCh14G016940 vs. NCBI nr
Match: gi|659076620|ref|XP_008438778.1| (PREDICTED: serine/arginine-rich splicing factor 33 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.4e-87
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR 175

[Close]
BLAST of CmoCh14G016940 vs. NCBI nr
Match: gi|449432785|ref|XP_004134179.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.5e-86
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRR  SYSRSPSPARHDSR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSR 175

[Close]
BLAST of CmoCh14G016940 vs. NCBI nr
Match: gi|645232904|ref|XP_008223084.1| (PREDICTED: serine/arginine-rich splicing factor 33 isoform X2 [Prunus mume])

HSP 1 Score: 307.4 bits (786), Expect = 2.1e-80
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR---SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SGR   SSRRR+P RSPRR+Y SYSRSPSP  HDSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVMHDSR 178

[Close]
BLAST of CmoCh14G016940 vs. NCBI nr
Match: gi|596298726|ref|XP_007227540.1| (hypothetical protein PRUPE_ppa010343mg [Prunus persica])

HSP 1 Score: 306.6 bits (784), Expect = 3.6e-80
Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR---SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SGR   SSRRR+P RSPRR+Y SYSRSPSP R DSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSR 178

[Close]
BLAST of CmoCh14G016940 vs. NCBI nr
Match: gi|645232907|ref|XP_008223085.1| (PREDICTED: serine/arginine-rich splicing factor 33 isoform X3 [Prunus mume])

HSP 1 Score: 305.1 bits (780), Expect = 1.0e-79
Identity = 161/179 (89.94%), Postives = 170/179 (94.97%), Query Frame = 1 

Query: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFER+GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQQLNH+VIGGRE
Sbjct: 61  ARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSR-SSGR---SSRRRSPARSPRRRYHSYSRSPSPARHDSR 176
           IRIVFAEENRKTPQEMR T+R SSGR   SSRRR+P RSPRR+Y SYSRSPSP  HDSR
Sbjct: 121 IRIVFAEENRKTPQEMRTTTRVSSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVMHDSR 179

The following BLAST results are available for this feature:
BLAST of CmoCh14G016940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRC28_ARATH5.0e-5870.45Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=... [more]
SL30A_ARATH2.5e-3353.89Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana GN... [more]
SRC33_ARATH1.3e-3252.35Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana GN=... [more]
SRC30_ARATH2.2e-2949.44Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=... [more]
SRS12_HUMAN2.5e-1743.94Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1[more]
BLAST of CmoCh14G016940 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XS42_PRUPE2.5e-8089.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1[more]
M5Y9H7_PRUPE1.2e-7989.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1[more]
A0A061ENX7_THECC2.1e-7484.09SC35-like splicing factor 28 isoform 2 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=... [more]
A0A061EPS8_THECC7.8e-7484.00SC35-like splicing factor 28 isoform 1 OS=Theobroma cacao GN=TCM_021102 PE=4 SV=... [more]
A0A151STA7_CAJCA1.0e-7383.5235 kDa SR repressor protein OS=Cajanus cajan GN=KK1_004323 PE=4 SV=1[more]
BLAST of CmoCh14G016940 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18810.12.8e-5970.45 SC35-like splicing factor 28[more]
AT3G13570.11.4e-3453.89 SC35-like splicing factor 30A[more]
AT3G55460.11.2e-3049.44 SC35-like splicing factor 30[more]
AT1G55310.31.6e-3049.17 SC35-like splicing factor 33[more]
AT2G21440.14.7e-1445.33 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmoCh14G016940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076620|ref|XP_008438778.1|1.4e-8798.29PREDICTED: serine/arginine-rich splicing factor 33 [Cucumis melo][more]
gi|449432785|ref|XP_004134179.1|1.5e-8697.71PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus... [more]
gi|645232904|ref|XP_008223084.1|2.1e-8089.89PREDICTED: serine/arginine-rich splicing factor 33 isoform X2 [Prunus mume][more]
gi|596298726|ref|XP_007227540.1|3.6e-8089.89hypothetical protein PRUPE_ppa010343mg [Prunus persica][more]
gi|645232907|ref|XP_008223085.1|1.0e-7989.94PREDICTED: serine/arginine-rich splicing factor 33 isoform X3 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007283 spermatogenesis
cellular_component GO:0016607 nuclear speck
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G016940.1CmoCh14G016940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 52..122
score: 3.3
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 51..124
score: 1.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 50..128
score: 17
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 51..124
score: 0.
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 17..132
score: 8.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 47..153
score: 2.42
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 21..175
score: 2.8
NoneNo IPR availablePANTHERPTHR23147:SF7SUBFAMILY NOT NAMEDcoord: 21..175
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G016940Cucsa.253680Cucumber (Gy14) v1cgycmoB0700
CmoCh14G016940CmaCh14G016500Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G016940CmaCh06G014560Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G016940Cla021695Watermelon (97103) v1cmowmB231
CmoCh14G016940MELO3C006598Melon (DHL92) v3.5.1cmomeB230
CmoCh14G016940CSPI03G13830Wild cucumber (PI 183967)cmocpiB243
CmoCh14G016940Lsi05G014910Bottle gourd (USVL1VR-Ls)cmolsiB238
CmoCh14G016940Cp4.1LG08g04610Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G016940MELO3C006598.2Melon (DHL92) v3.6.1cmomedB260
CmoCh14G016940CsaV3_3G014050Cucumber (Chinese Long) v3cmocucB0283
CmoCh14G016940Cla97C05G087140Watermelon (97103) v2cmowmbB243
CmoCh14G016940Bhi01G000656Wax gourdcmowgoB0315
CmoCh14G016940CsGy3G013960Cucumber (Gy14) v2cgybcmoB290
CmoCh14G016940Carg20148Silver-seed gourdcarcmoB1123
CmoCh14G016940Carg17377Silver-seed gourdcarcmoB0823
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G016940CmoCh06G014580Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G016940Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G016940Cucurbita moschata (Rifu)cmocmoB233
CmoCh14G016940Cucumber (Gy14) v1cgycmoB0993
CmoCh14G016940Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G016940Cucurbita maxima (Rimu)cmacmoB883
CmoCh14G016940Wild cucumber (PI 183967)cmocpiB265
CmoCh14G016940Cucumber (Chinese Long) v2cmocuB239
CmoCh14G016940Cucumber (Chinese Long) v2cmocuB259
CmoCh14G016940Melon (DHL92) v3.5.1cmomeB200
CmoCh14G016940Watermelon (Charleston Gray)cmowcgB219
CmoCh14G016940Watermelon (Charleston Gray)cmowcgB222
CmoCh14G016940Watermelon (97103) v1cmowmB239
CmoCh14G016940Cucurbita pepo (Zucchini)cmocpeB225
CmoCh14G016940Cucurbita pepo (Zucchini)cmocpeB230
CmoCh14G016940Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G016940Bottle gourd (USVL1VR-Ls)cmolsiB213
CmoCh14G016940Cucumber (Gy14) v2cgybcmoB719
CmoCh14G016940Melon (DHL92) v3.6.1cmomedB225
CmoCh14G016940Silver-seed gourdcarcmoB0096
CmoCh14G016940Silver-seed gourdcarcmoB0444
CmoCh14G016940Cucumber (Chinese Long) v3cmocucB0310
CmoCh14G016940Watermelon (97103) v2cmowmbB246
CmoCh14G016940Wax gourdcmowgoB0295
CmoCh14G016940Wax gourdcmowgoB0317