Carg20148 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20148
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Serine/arginine-rich SC35-like splicing factor
Location	Cucurbita_argyrosperma_scaffold_168 : 399582 .. 404210 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCTCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCCCAAATCTCCCTAGGGTTAGGGTTTTCTCTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAATCCACTATGGCGAGGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGCTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGTATTTCATGTTCTTCTCGAGCTTCATCTGTTATTGGCAATGTCTCAATTTATTAGATTGATGGACGAATTGAATGGCGCATTTACTTTCGCCTTTTACATGTAAATGTGCATTTGTCTAGAGTTTTGAATTTTGGGTAGGAGGTATATACGGCTTTACCGTATGAATGTTGATTTGTAGTTATATAAATATTTATCAAGAATCGCATTCGTTGCGTGTAGTCTCTTGTCAAGACGTGTGCAGTCACTCGACATTGTATTATTTTCTCGTTTTCTGTTGTCTATACATTGTATGAATTGTTAAGAGGAATAATTTAGGGTTTTGGTTGCATTTCATGCAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGTATGGTCGCTTTCATGTTAACTTGTGCTCACTTGGGTATTGAAGAAACCGATTTATTATTTCCTGGTTTTTCTTTCTCTAATTATCAGGCTATCCACACTAGAAAATAGAGTTTTGCTATATTAGCTAAGAAAGAAAAATTTAAGAAAATTAATAATATTTTTAGATTAAGTTCTGTGTTTAGAATCTCAGAGCACTGTTGGAGTTTCAAAGTTTAAATTGCCTTTATCATTATGTAATTATTTGGCTAAGATTGTTTACATATCAATATGAGAGTATGAACGGTCACATTTTTGCATATGGAAGGAATCTGCAAATTTGTTGATTAACTTGAGCTTAGTTCACACTTAATCCTAGAGACGAGGAATTTGATTTTGTTAAATGATATGTTTACTAGTATGTAATGACAGTGATTACCACTTTAGTTCAACCATATTTTGAATTTAGTTTAAATATAACTGATAATTAAGAAATTCCAAAAAGCGTAAATTAATTGAATTGGCAGTGGTTTGCATTATATTTGGATCTGAAAATTATTATTGCTTCTTATATAAGATTGTGTGTTGACTTGTGAGATGTGGCAGCCCTTTCTAGTTTTCATTGGGTCAGAAATGGTTTATATTTTCGTGTTTTGAATTTGTGGAAGTTTATTAATGTTCTGTTACGAAATATTATAGATATGATCTACTTTGTTCTCTCTCCCTCTCTCACACGAGGATATCATTCCCTTCATTGCCTATTTGTAGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTGTGACTTCACGCTCAAGGTTCTATGACCTTCCTCCTAACTTCTAATCTTGCAGTATCCTTTGGTCTGATTATCTTCTTCACGTAACCTTTATTTTTAATTTTGAATTAATATATTGATAGTCTTTTTCTCGGTGCTCTTATATAGTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTGTCAGTGTCAATACTTATCTTGGTTTTTTCTCTCTATTTTGCTGATTTCGTGAAAAGAAACATTTGTATTGGGTTGATGTTGACGTTTGATTAACATCATTGTGATGCAATTTGTAATTACACCTTCATTTTATGCTCAACATGCCTTTTCTATTTGACTGCAGCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTATCTGTCATACTTATTCTACTACTAGCAAGACTAAAATCATTATTGTCCTGCTGTTTCCGTTACTCCTTACTTCTATACCGTGTTTTGAAATATTGGTTGGTCCTATTATGATGATAAGTAAACTGTGCATGCCTTCTTCTAACTATATAATTTTGTTCTTTAACATGTCAAAGCATTCTTTTTGGATGAGAAACATTGCATAATATTTTGAATTTTGGCACTTGTCTTATAGAGTATTCAAACCTCCAATTGAAGTACATGTTCATTGTTTTGATTTTCAGTCTAACCAAAATGATTGTCTGCCATTGGGTGAAAATCAATTTTATAGAAATATTTCAATAAACTCAGCTTACTTCGATTTACTCAACCTGAACCTCATGAGTTCTGTTTTGTTCAAAAAACTTCTTGAAGTTATCAATGGTGTGTCAGTTTTAAAAAGCACGATCCATTTCTAATGGATGAATTATCCTTGTTCCTATGTCATGCGGTGATGTGTTTAGTCAGTAAATCTAAGTGGTACTTTGCTGTGGTTTCAATTGCTGACTAAATATTAGTGTCATAGTCCAATAATAATAGTGGCACTTTTAATCTTCATTTCCTCATCAGGTTTATAATATCAGCCCAATATATTAAATCTAAGCAACACTTTCATTTTTTTGATGATCTCCATGCTTTAAATGTAGAATTTTATTTCATTTGCTTGAATGTTATCATGGTTAACCAAAAAGATTTAAATTTAATATTTGATTTGATGCACGTGAAATATTCTACTCCCTACATAGTACAGAGTTGCATTGCAGGAGAACGTGTACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGTGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCACTTGCTTACTTTACCTATCGAACCCTCTCCATGAGTATAATCTATTACCTTTTCAATTATCTTAGTTGCATGTTTTTTATTTGTTTGTTGACAATTTTCTTGTGAGCAGAAGTTAAGGATTGGTGAGAGTTGAAAAACAAAATTTATCTCTGGTTTTTCCCCCCCTTTTTCCTCCCTTTCAAATCTCAACGATTTATCAGCAAGAAAGTGATTTGTAAGTTTGATATCTTCTTTTGCATATACCGTCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCAAAGGAGAAAAAGCCAAAGTTTTACTGGTTGTGGTATGGTGACATTGTCCAAGAAAAGATAATGTGATTTTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATCAGTCTTGAAAATGATGTTGATAGAAAATTGTGCCTATAAAAGTATGATATAGTTAGTATCATAAGTACCTGTTGAACGTACCTCATTGGGCCTTTGAAGACTGCTTGGACAGGTTTTCTTTCCTGTGAGAGAGAGAGAGTTGTTTGTGTTGTGCTGTTTTGAGTCTGAATGGAAATCGTTTCTGTTTGATTTGTTGATTTATCATTCCATTAATTTTTTCCATTGTTGTGGCTGATGTAGGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTATAGCCGATCTCCAACTCCGAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGTTCTCGTTCACGTTCCTATAGGTATTTTACCTTTTAAATTCTTTTTTCTGGGCCTCTGGAAGACAAGTCTTCTCATTTCTGATTAAAGAGGCAAGAAGGAAATGACGTTCTTCAATGATCTTGTATTTTTGCTCCTTTCAAGAATTTATTCGATTATATTTGTTGATTTATGTTCAAGCTTAATTCAATATGAACTCAGAATGAGATTTGAGAGTGTTTTAGTTAGGGACAGCAAAGTTGTATATGTCGATTTATCGAACATTTCTGGTTCGAAGTATAATGTGCATTGTGTTTAGCCGGTAATAATTTCCATTGGTTGATTGAAAATTTAACACCCTGTCATGTTGCTTCTGCAGTCCTCGCTGATGGATGTGTTTCGGGATCGTCCTCGAGATTTGTTAGTCTGCCTTCCGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTTTCAAAGTAGTTAACTTCATGTGAGTGCATGCTCTGGTGGACTTCTACTTGACAACCTTTCCTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGG

mRNA sequence

TTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCTCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCCCAAATCTCCCTAGGGTTAGGGTTTTCTCTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAATCCACTATGGCGAGGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGCTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTATAGCCGATCTCCAACTCCGAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGTTCTCGTTCACGTTCCTATAGTCCTCGCTGATGGATGTGTTTCGGGATCGTCCTCGAGATTTGTTAGTCTGCCTTCCGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTTTCAAAGTAGTTAACTTCATGTGAGTGCATGCTCTGGTGGACTTCTACTTGACAACCTTTCCTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGG

Coding sequence (CDS)

ATGGCGAGGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGCTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTATAGCCGATCTCCAACTCCGAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGTTCTCGTTCACGTTCCTATAGTCCTCGCTGA

Protein sequence

MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

Homology

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BLAST of Carg20148 vs. NCBI nr
Match: XP_022979912.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima])

HSP 1 Score: 245.4 bits (625), Expect = 1.9e-61
Identity = 191/248 (77.02%), Postives = 191/248 (77.02%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMR-------------------WQKQQKAFSSKVSATAISLSRGAR 180
           IRIVFAEENRKTPQEMR                                           
Sbjct: 121 IRIVFAEENRKTPQEMRVTSXXXXXXXXXXXXXXXXXXXYHSYSXXXXXXXXXXXXXXXX 180

Query: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX 230
                         SHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXSHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX 240

[Close]

BLAST of Carg20148 vs. NCBI nr
Match: XP_023527505.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.8 bits (621), Expect = 5.6e-61
Identity = 190/248 (76.61%), Postives = 191/248 (77.02%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMR-------------------WQKQQKAFSSKVSATAISLSRGAR 180
           IRIVFAEENRKTPQEMR                                           
Sbjct: 121 IRIVFAEENRKTPQEMRVTSXXXXXXXXXXXXXXXXXXXYHSYSXXXXXXXXXXXXXXXX 180

Query: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX 230
                         SHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXSHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX 240

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BLAST of Carg20148 vs. NCBI nr
Match: XP_022955785.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 3.1e-59
Identity = 185/248 (74.60%), Postives = 186/248 (75.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSR  XXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD
Sbjct: 1   MAKYRSRSRSYSPRRRSRTPXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMR-------------------WQKQQKAFSSKVSATAISLSRGAR 180
           IRIVFAEENRKTPQEMR                                           
Sbjct: 121 IRIVFAEENRKTPQEMRVTSXXXXXXXXXXXXXXXXXXXYHSYSXXXXXXXXXXXXXXXX 180

Query: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARXXXXXXXXXXXXXXXX 230
                         SHSPRDRRDYSRSPTPKENGRSPRAVD   XXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXSHSPRDRRDYSRSPTPKENGRSPRAVDXXXXXXXXXXXXXXXXXXX 240

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BLAST of Carg20148 vs. NCBI nr
Match: XP_022973749.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 2.2e-57
Identity = 142/204 (69.61%), Postives = 149/204 (73.04%), Query Frame = 0


Query: 45  RSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA 104
           RSPAPSGLLVRNLPLDARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF+EDA
Sbjct: 47  RSPAPSGLLVRNLPLDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDA 106

Query: 105 AEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR-------------------WQKQQKAF 164
            EAKQQLNHTVIGGREIRIVFAEENRKTPQEMR                           
Sbjct: 107 IEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRSTXXXXXXXXXXXXXXXXXXXXXXXXX 166

Query: 165 SSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIAR 224
                      + GAR E+ SPARSRSIS+S  P D+RDYS+SP PKENGRS R V+IAR
Sbjct: 167 XXXXXXXXXXXNHGARGEHYSPARSRSISQSRFPHDKRDYSQSPRPKENGRSSREVNIAR 226

Query: 225 XXXXXXXXXXXXXXXXXXXSYSPR 230
               XXXXXXXXXXXXX  SYSPR
Sbjct: 227 SGSRXXXXXXXXXXXXXSRSYSPR 250

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BLAST of Carg20148 vs. NCBI nr
Match: XP_022939180.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 6.4e-57
Identity = 127/179 (70.95%), Postives = 134/179 (74.86%), Query Frame = 0


Query: 45  RSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA 104
           RSPAPSGLLVRNLPLDARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF+EDA
Sbjct: 47  RSPAPSGLLVRNLPLDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFSEDA 106

Query: 105 AEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSK---------------- 164
            EAKQQLN TVIGGREIRIVFAEENRKTPQEMR        S +                
Sbjct: 107 IEAKQQLNQTVIGGREIRIVFAEENRKTPQEMRSTSCSSGRSYRRRSPGXXXXXXXXXXX 166

Query: 165 ---VSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIA 205
                A   S +RGAR EY SPARSRSIS+S  P D+RDYS+SP PKENGRS R V+IA
Sbjct: 167 XXXXPARHDSRNRGARGEYYSPARSRSISQSCFPHDKRDYSQSPRPKENGRSSREVNIA 225

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BLAST of Carg20148 vs. TAIR10
Match: AT5G18810.1 (SC35-like splicing factor 28)

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-40
Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 46  SPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAA 105
           S  PSGLL+RNLPLDARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAA
Sbjct: 43  SSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAA 102

Query: 106 EAKQQLNHTVIGGREIRIVFAEENRKTPQEMR 138
           EA +++NH VIGGREI IVFAEENRKTPQEMR
Sbjct: 103 EAMKRMNHKVIGGREIAIVFAEENRKTPQEMR 134

[Close]

BLAST of Carg20148 vs. TAIR10
Match: AT3G13570.1 (SC35-like splicing factor 30A)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 46  SPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAA 105
           S  P+ LLVRNL  D R EDLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAA
Sbjct: 33  SDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAA 92

Query: 106 EAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDE-- 165
           EAK Q++  ++ GRE+ +VFAEENRK P EMR  + +   S++      S  R +R    
Sbjct: 93  EAKHQMDGYLLLGRELTVVFAEENRKKPTEMR-TRDRGGRSNRFQDRRRSPPRYSRSPPP 152

Query: 166 ------------YLSPARSRSISRSHSPRDRR 184
                       Y SP   R  SRS SP+DRR
Sbjct: 153 RRGRXSXXXSRGYNSPPAKRHQSRSVSPQDRR 183

[Close]

BLAST of Carg20148 vs. TAIR10
Match: AT1G55310.3 (SC35-like splicing factor 33)

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-24
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 49  PSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTG------------EPRGFGFV 108
           P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG            +PRGFGFV
Sbjct: 35  PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFV 94

Query: 109 KFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR 138
           +F    DAA+AK  ++  ++ GRE+ +VFAEENRK P EMR
Sbjct: 95  QFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMR 135

[Close]

BLAST of Carg20148 vs. TAIR10
Match: AT3G55460.1 (SC35-like splicing factor 30)

HSP 1 Score: 104.8 bits (260), Expect = 7.4e-23
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 52  LLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQL 111
           LLVRN+PLD RPE+LR PFERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +
Sbjct: 49  LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108

Query: 112 NHTVIGGREIRIV 125
           N     GREI +V
Sbjct: 109 NRRSFAGREITVV 121

[Close]

BLAST of Carg20148 vs. TAIR10
Match: AT2G21440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-14
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 52  LLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQL 111
           L++RNLP  A+P D+++ F   G V DV++PKN+ TG P+GF FVKF   +DAA A ++ 
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 112 NHTVIGGREIRIVFA 127
           N  + G R I + +A
Sbjct: 393 NGHMFGKRPIAVDWA 407

[Close]

BLAST of Carg20148 vs. Swiss-Prot
Match: sp|Q1PDV2|SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.1e-39
Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 46  SPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAA 105
           S  PSGLL+RNLPLDARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAA
Sbjct: 43  SSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAA 102

Query: 106 EAKQQLNHTVIGGREIRIVFAEENRKTPQEMR 138
           EA +++NH VIGGREI IVFAEENRKTPQEMR
Sbjct: 103 EAMKRMNHKVIGGREIAIVFAEENRKTPQEMR 134

[Close]

BLAST of Carg20148 vs. Swiss-Prot
Match: sp|Q9LHP2|SL30A_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-28
Identity = 75/152 (49.34%), Postives = 95/152 (62.50%), Query Frame = 0


Query: 46  SPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAA 105
           S  P+ LLVRNL  D R EDLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAA
Sbjct: 33  SDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAA 92

Query: 106 EAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDE-- 165
           EAK Q++  ++ GRE+ +VFAEENRK P EMR  + +   S++      S  R +R    
Sbjct: 93  EAKHQMDGYLLLGRELTVVFAEENRKKPTEMR-TRDRGGRSNRFQDRRRSPPRYSRSPPP 152

Query: 166 ------------YLSPARSRSISRSHSPRDRR 184
                       Y SP   R  SRS SP+DRR
Sbjct: 153 RRGRXSXXXSRGYNSPPAKRHQSRSVSPQDRR 183

[Close]

BLAST of Carg20148 vs. Swiss-Prot
Match: sp|Q9SEU4|SRC33_ARATH (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.0e-26
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 49  PSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAK 108
           P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK
Sbjct: 35  PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK 94

Query: 109 QQLNHTVIGGREIRIVFAEENRKTPQEMR 138
             ++  ++ GRE+ +VFAEENRK P EMR
Sbjct: 95  HHMDGYLLLGRELTVVFAEENRKKPTEMR 123

[Close]

BLAST of Carg20148 vs. Swiss-Prot
Match: sp|Q8L3X8|SRC30_ARATH (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-21
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 52  LLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQL 111
           LLVRN+PLD RPE+LR PFERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +
Sbjct: 49  LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108

Query: 112 NHTVIGGREIRIV 125
           N     GREI +V
Sbjct: 109 NRRSFAGREITVV 121

[Close]

BLAST of Carg20148 vs. Swiss-Prot
Match: sp|O75494|SRS10_HUMAN (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-18
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 0


Query: 47  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE 106
           P  + L VRN+  D R EDLR  F R+GP+ DVY+P ++YT  PRGF +V+F    DA +
Sbjct: 7   PPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAED 66

Query: 107 AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSS 148
           A   L+   I GR+I I FA+ +RKTP +M+ ++ +  +SS
Sbjct: 67  ALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSS 107

[Close]

BLAST of Carg20148 vs. TrEMBL
Match: tr|A0A1S3AXW0|A0A1S3AXW0_CUCME (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=LOC103483786 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.6e-56
Identity = 158/209 (75.60%), Postives = 161/209 (77.03%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAI-------------------SLSRGAR 180
           IRIVFAEENRKTPQEMR   +    S +                         S SRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRXXXXXXXXXXXXXXXXXXXXXXXHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPT 191
           DEYLSP              R+DYSRSPT
Sbjct: 181 DEYLSPXXXXXXXXXXXXXXRQDYSRSPT 209

[Close]

BLAST of Carg20148 vs. TrEMBL
Match: tr|A0A2C9W8S9|A0A2C9W8S9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189500 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.7e-53
Identity = 127/221 (57.47%), Postives = 140/221 (63.35%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSR--XXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLP 60
           M RYRSRSRSYSPRR SR                            RSPAPSGLLVRNLP
Sbjct: 1   MPRYRSRSRSYSPRRGSRTPPRGRKHYYEDEGPRDRYRDSRSHRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGG 120
           LDARPEDLR+PFE++GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQ++NH +IGG
Sbjct: 61  LDARPEDLRVPFEKYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQRMNHKIIGG 120

Query: 121 REIRIVFAEENRKTPQEMR----------------------WQKQQKAFSSKVSATAISL 180
           REIRIVFAEENRKTPQEMR                                   A   S 
Sbjct: 121 REIRIVFAEENRKTPQEMRTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPARHDSR 180

Query: 181 SRGARDEYLSPARSRSISRSHSPRDRRDY---SRSPTPKEN 195
             GARD+Y SP R+RSISRS SPRD RDY    R P+P++N
Sbjct: 181 DHGARDDYNSPGRARSISRSRSPRDERDYRLNERFPSPRQN 221

[Close]

BLAST of Carg20148 vs. TrEMBL
Match: tr|A0A2C9W8Y0|A0A2C9W8Y0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189500 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.7e-53
Identity = 127/221 (57.47%), Postives = 140/221 (63.35%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSR--XXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLP 60
           M RYRSRSRSYSPRR SR                            RSPAPSGLLVRNLP
Sbjct: 1   MPRYRSRSRSYSPRRGSRTPPRGRKHYYEDEGPRDRYRDSRSHRDRRSPAPSGLLVRNLP 60

Query: 61  LDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGG 120
           LDARPEDLR+PFE++GPVKDVYLPKNYYTGEPRGFGFVK+R+AEDAAEAKQ++NH +IGG
Sbjct: 61  LDARPEDLRVPFEKYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQRMNHKIIGG 120

Query: 121 REIRIVFAEENRKTPQEMR----------------------WQKQQKAFSSKVSATAISL 180
           REIRIVFAEENRKTPQEMR                                   A   S 
Sbjct: 121 REIRIVFAEENRKTPQEMRTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPARHDSR 180

Query: 181 SRGARDEYLSPARSRSISRSHSPRDRRDY---SRSPTPKEN 195
             GARD+Y SP R+RSISRS SPRD RDY    R P+P++N
Sbjct: 181 DHGARDDYNSPGRARSISRSRSPRDERDYRLNERFPSPRQN 221

[Close]

BLAST of Carg20148 vs. TrEMBL
Match: tr|V4S7S4|V4S7S4_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005625mg PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-52
Identity = 132/219 (60.27%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60
           MARY  RSRSYSPRRR     XXXXX                  RSPAPSGLLVRNLPLD
Sbjct: 1   MARY--RSRSYSPRRR-----XXXXXIRGRKRYDDEPRRSYGDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           AR E+LR+ FER+GPVKDVYLPKNYYTGEPRGFGFVKFR+AEDAAEAKQ+LNH++IGGRE
Sbjct: 61  ARTEELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRW--------------------QKQQKAFSSKVSATAISLSRGA 180
           I+IVFAEENRKTPQEMR                     +++  ++S   S   +S  R A
Sbjct: 121 IKIVFAEENRKTPQEMRTSARVSGRYGGSSRRTPPRSPRRRYHSYSRSPSPVRVSRDRRA 180

Query: 181 RDEYLSPARSRSISRSHSPRDRRDY---SRSPTPKENGR 197
           RD+  SP +SRSISRS SPRD RDY    R P+P ENGR
Sbjct: 181 RDDNRSPRQSRSISRSLSPRDERDYRSNERYPSPMENGR 212

[Close]

BLAST of Carg20148 vs. TrEMBL
Match: tr|V4RGB5|V4RGB5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005625mg PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-52
Identity = 132/219 (60.27%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRXXXXXXXXXXXXXXXXXXXXXXXXXXRSPAPSGLLVRNLPLD 60
           MARY  RSRSYSPRRR     XXXXX                  RSPAPSGLLVRNLPLD
Sbjct: 1   MARY--RSRSYSPRRR-----XXXXXIRGRKRYDDEPRRSYGDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           AR E+LR+ FER+GPVKDVYLPKNYYTGEPRGFGFVKFR+AEDAAEAKQ+LNH++IGGRE
Sbjct: 61  ARTEELRVAFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQRLNHSLIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRW--------------------QKQQKAFSSKVSATAISLSRGA 180
           I+IVFAEENRKTPQEMR                     +++  ++S   S   +S  R A
Sbjct: 121 IKIVFAEENRKTPQEMRTSARVSGRYGGSSRRTPPRSPRRRYHSYSRSPSPVRVSRDRRA 180

Query: 181 RDEYLSPARSRSISRSHSPRDRRDY---SRSPTPKENGR 197
           RD+  SP +SRSISRS SPRD RDY    R P+P ENGR
Sbjct: 181 RDDNRSPRQSRSISRSLSPRDERDYRSNERYPSPMENGR 212

The following BLAST results are available for this feature:

BLAST of Carg20148 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979912.1	1.9e-61	77.02	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]	[more]
XP_023527505.1	5.6e-61	76.61	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo...	[more]
XP_022955785.1	3.1e-59	74.60	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]	[more]
XP_022973749.1	2.2e-57	69.61	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]	[more]
XP_022939180.1	6.4e-57	70.95	serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]	[more]

BLAST of Carg20148 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18810.1	2.3e-40	81.52	SC35-like splicing factor 28	[more]
AT3G13570.1	1.1e-29	49.34	SC35-like splicing factor 30A	[more]
AT1G55310.3	1.0e-24	55.45	SC35-like splicing factor 33	[more]
AT3G55460.1	7.4e-23	63.01	SC35-like splicing factor 30	[more]
AT2G21440.1	4.8e-14	45.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg20148 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1PDV2\|SRC28_ARATH	4.1e-39	81.52	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9LHP2\|SL30A_ARATH	1.9e-28	49.34	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
sp\|Q9SEU4\|SRC33_ARATH	4.0e-26	62.92	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q8L3X8\|SRC30_ARATH	1.3e-21	63.01	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
sp\|O75494\|SRS10_HUMAN	6.9e-18	44.55	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of Carg20148 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXW0\|A0A1S3AXW0_CUCME	3.6e-56	75.60	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A2C9W8S9\|A0A2C9W8S9_MANES	3.7e-53	57.47	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189500 PE=4 SV=...	[more]
tr\|A0A2C9W8Y0\|A0A2C9W8Y0_MANES	3.7e-53	57.47	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189500 PE=4 SV=...	[more]
tr\|V4S7S4\|V4S7S4_9ROSI	4.1e-52	60.27	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005625mg PE=4 ...	[more]
tr\|V4RGB5\|V4RGB5_9ROSI	4.1e-52	60.27	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10005625mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0007283	spermatogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR000221	Protamine_P1
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR003954	RRM_dom_euk
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007283	spermatogenesis
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20148-RA	Carg20148-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 e-value: 1.4E-19 score: 81.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..122 e-value: 3.8E-19 score: 68.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..128 score: 17.745
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 51..124 e-value: 0.0012 score: 28.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 2..143 e-value: 5.7E-28 score: 99.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..190
None	No IPR available	PANTHER	PTHR23147:SF7	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 154..227 coord: 33..141
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 154..227 coord: 33..141
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 47..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20148	Cla021695	Watermelon (97103) v1	carwmB0834
Carg20148	MELO3C006598	Melon (DHL92) v3.5.1	carmeB0828
Carg20148	ClCG05G005700	Watermelon (Charleston Gray)	carwcgB0807
Carg20148	CSPI03G13830	Wild cucumber (PI 183967)	carcpiB0874
Carg20148	Cucsa.253680	Cucumber (Gy14) v1	carcgyB0960
Carg20148	CmaCh06G014560	Cucurbita maxima (Rimu)	carcmaB1155
Carg20148	CmaCh14G016500	Cucurbita maxima (Rimu)	carcmaB1153
Carg20148	CmoCh06G014580	Cucurbita moschata (Rifu)	carcmoB1125
Carg20148	CmoCh14G016940	Cucurbita moschata (Rifu)	carcmoB1123
Carg20148	Cp4.1LG08g04610	Cucurbita pepo (Zucchini)	carcpeB1165
Carg20148	Cp4.1LG03g11150	Cucurbita pepo (Zucchini)	carcpeB1164
Carg20148	CsGy3G013960	Cucumber (Gy14) v2	carcgybB0828
Carg20148	MELO3C006598.2	Melon (DHL92) v3.6.1	carmedB0840
Carg20148	CsaV3_3G014050	Cucumber (Chinese Long) v3	carcucB0878
Carg20148	Cla97C05G087140	Watermelon (97103) v2	carwmbB0867
Carg20148	Bhi01G000656	Wax gourd	carwgoB0971

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20148	Carg17377	Silver-seed gourd	carcarB544

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20148	Watermelon (97103) v2	carwmbB0868
Carg20148	Wax gourd	carwgoB0970
Carg20148	Wax gourd	carwgoB0972
Carg20148	Silver-seed gourd	carcarB087
Carg20148	Cucurbita maxima (Rimu)	carcmaB1154
Carg20148	Cucurbita maxima (Rimu)	carcmaB1156
Carg20148	Cucurbita moschata (Rifu)	carcmoB1124
Carg20148	Cucurbita moschata (Rifu)	carcmoB1126
Carg20148	Cucurbita pepo (Zucchini)	carcpeB1163
Carg20148	Cucumber (Chinese Long) v2	carcuB0854
Carg20148	Bottle gourd (USVL1VR-Ls)	carlsiB761
Carg20148	Bottle gourd (USVL1VR-Ls)	carlsiB760
Carg20148	Melon (DHL92) v3.5.1	carmeB0827
Carg20148	Melon (DHL92) v3.6.1	carmedB0839
Carg20148	Watermelon (Charleston Gray)	carwcgB0808
Carg20148	Watermelon (97103) v1	carwmB0835