Cp4.1LG03g11150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g11150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 11239879 .. 11244745 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACGTCTCACCGGACCATAGGTGGACGTTTAAATCTTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCGCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCTCCCAAATCTCCCTAGGGTTAGGGTTTTCTCTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAACCCACTATGGCGAGGTACCGAAGCCGGAGCAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGTATTTCATGTTCTTCTTCGAGCTTCATCTGTTATTGGCAATGTCTCAATTTATTAGATTGATGGACGAATTGAATGGCGCATTTGCCTTCGTGTTTTACATGTAAATGTGCATTTGTCTAGAGTTTTGAATTTTGGGTAGGAGGTGTATACGGCTTACCGTATGAATGTTGATTTGTAGTTATATAAATATTTATCAAGAAGAGCATTCGTTGCGTGTAGTCTCTTGTCAAGACGTGTGCAGTCACTCGACATTGTATTATTTTCTCGTTTTCTGTTGTCTATACATTGTATGAATTATTTAGAGGAATAATTTAGGGTTTTGGTTGCATTTCATGCAGGCCAGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGTATGGTCGCTTTCATGTTAACTTGTGCTCACTTGGGTATTTCGATTTATTATTTCCTGGTACTTCTTTCTCTAATTGTCAGGCTATCCACACTAGAAAATAGAGTTTTGCTATATTAGCCAAGAAAGAAAAATTTAAGAAAATTAATATTATTTTTAGATTAAGTTCTGAGTTCAGAATCTCAGAGCACTGTTGGAGTTTCAAAGTTTAATTTGCCTTTACCATTATGTAATTATTTGGATAAGATTGTTTACAAATCAATATGAGAGTATGAACGGTAACATTTCTGCATATGGAAGGAATCTGCAAATTTGTTGATTAACTTGAGCTTAGTTCACACTTAATCCTAGAGACAAGAATTTGTTTTTGTTAAATGATATGTTTACTAGTATGTAATGGCAGTGATTACCACTTTAGTTCAACCATCTTTTGAATTTAGTTTAAATATAACTGATAATTAAGAAATTCCAAAAAGCGTCAATTAATTTAATTGGCAGTGGTTTGCATTATATTTGGATCTGAAAATTATTATTGCTTCTTATATAAGATTGTGTGTTGACTTGTGAGATGTGGCAGCCCTTTCTAGTTCTCATTGGGTCAGAAATGGGTTTATATCTTCGTGTTTGGAATTTGTGGAAGTTTATTAATGTTCTGTTACAAAATATTATAGATATGATCTACTTTGTTCTCTCTCTCTCTCTCTCACGAGGATATCATTCCCTTCATTGCCTATTTGTAGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTATTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTGTGACTTCACGCTCAAGGTTCTATGACCTTCCTCCTAACTTCTAATCTTGCAGTATCCTTTGGTCTGATTATCTTCTTTACGTAACCTTTATTTTTAATTTTGAATTAATATATTGATAGTCTTTTTCTCGGTGCTCATATATAGTGGCAGAAGCAGCAGAAGACGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTGTCAGTGTCAATACTTATCTTGGTTTTTGCTCTCTATTTTGCTGATTTCGTGAAAAGAAAAATTTGCATTGGGTTGATGCTGACGTTTGATTAACATCATTGTGATGCAATTTGTAATTACACCTTCATTTTATGCTCAACATGCCTTTTCTATTTGACTGCAGCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTATCTGTCATACTTATTCTACTACTAGCAAGACTAAAATCATTATTGTCCTGCTGTTTCCATTACTCCTTACTTCTATACCATGTTTTGAAATATTGGTTGGTCCTATTATGATGATAAGTAAACTGTGCATGCCTTCTTCTAACTCTATAATTTTGTACTTTAACATGTCAAAGCATTCTTTTAGGATGAGAAACATTGCATAATATTTTGAATTTTGGCACTTGTCTTAGAGTATTCAAACCTCCAATTGAAGTACATGTTCATTGTTTTGATTTTCAGTCTAACCAAAATGATTTTGTCCGTCATTGGGTGAAAATCATTTTTATAGAAATATTTCGATAAACTCAGCTTACTTCGATTTACCCAACCTGAACCTCATGAGTTCTGTTTTGTTCAAAAAACTTCTTGAAGTTGTCAATGGTGTGTCAGTTTTAAGAAGCACGATCCATTTCTAATGGATGAATTATCCTTGTTCCTATGTCATGCGGTGATGTGTTTAGTCAGTAAATCTAAGTGGTACTTTGCTGTGGTTTCAATTGCTGACTAAATATTAGTGTTATAGTCCAATAATAATAGTTGCACTTTTAATCTTCATTTCCCCATCAGGTATATAATATCAGCCCAATATATTAAATCTAAGCAACACTTTCATTTTTTTTTATGTTCTCCATGCTTTAAATGTAGAATTTTATTTCATTTGCTTGAATGTTATCATGGTTAACCAAAAAGATTTAAATTTAATATTTGATTTGATGCACGTGAAATATTCTACTCCCTACATAGTACAGAGTTGCATTGCAGGACAAAGTGTACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGTGTAAGGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAAAGTGATGGGCACTTGCTTACTTTACCTATCGAACCCTCTCCATGAGTATAATCTATTACCTTTTCAATTATCTTAGTTGCATGTTTTTTATTTGTTTGTTGACAATTTTCTTGTGAGCAGAAGTTAAGGATTGGTGAGAGTTTAAAAACAAAATTTATCTCTGGTTTTTTGCCCCCTTTTTCCTCCCTTTCAAATCTCAACGATTTATCAGCAAGAAAGTGATTTGTAAGTTTGATATCTTCTTTTGCATATACCGTCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCAAAGGAGAAAAAGCCAAAGTTTTACTGGTTGTGGTATGGTGACATTGTCCAAGAAAAGATAATGTGATTTTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTTAGTTGATCAGTCTTGAAAATGATGTTAATAGAAAATTGTGCTTATAAAAGTATGATATAGTTAGTATCATAAGTACCTGTTGAACGTACCTCATTGGGCCTTTGAAGACTGCTTGGACAGGTTTTCTTTCCTGTGAGAGAGAGAGAGTTGGTTGTGTTATGCTGTTTTAAGTCTGAATGGAAATCGTTTCTGTTTGATTTGTTGATTTATTATTCCATTAATTTTTTCCATTGTTGTGGCTGATGTAGGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTACAGCCGATCTCCAACTCCAAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCTTCTGGATCGCGTTCACGTTCCTTTAGGTATTTTACCTTTTAAATTCTTTTTTCTGGTCCTCTGGAAGACAAGTTTCTCATTTCTGATTAACGAGGCAAGAAGGAAATGACATTCTTCAATGATCTTGTTTTTTTGGTCCTTTCTTTCAAGAATTTATTCGATTATATTTTGATCTGGTAGAATCTAGCAAAATGCTTTGGAGATATTTCATCGATTTACTAATGCTCAAGCTTAATTCAATATGAACTCAGAATGAGATTTGAGAGTGTTTTAGTTAGGGACAGCAAAGTTGTATACGTTGATTTGTCATTATCGAACATTTCTGGTTCAAAGTATAGTGTTCATTGTGTTTAGCCGGTAATAATTTCCTTTGGTTGAAGAATTTAACACCCTGTCATGTTGCTTCTGCAGTCCTCGCTGATGGATGTGGTTCGGGATCGTCCTCGAGATTTGTTAGTCTGCCTTCCGTTATGGTCAGATGAACTTTGCTATTCCATGCTATGCAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTCTCAAGTAGTTAACTTCATGTGAGTGCATGCTGGTGGACTTCTACTTGACAACCTTTACTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGGAAAGTTTAGGATGCTCCAATCTTGTTATGGATATTGTCTTGTTTGTTTACCCCAGTTTTGTGTTATTGTTCAGTAATCCCATTTTATATCAGTTCTTAAACCTTTTTTTAAATTTCCAAGTTTTATTATTAAAACTAGAAACAGAATCGTCAATGACTGG

mRNA sequence

CCACGTCTCACCGGACCATAGGTGGACGTTTAAATCTTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCGCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCTCCCAAATCTCCCTAGGGTTAGGGTTTTCTCTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAACCCACTATGGCGAGGTACCGAAGCCGGAGCAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGTGGCAGAAGCAGCAGAAGACGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTACAGCCGATCTCCAACTCCAAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCTTCTGGATCGCGTTCACGTTCCTTTAGTCCTCGCTGATGGATGTGGTTCGGGATCGTCCTCGAGATTTGTTAGTCTGCCTTCCGTTATGGTCAGATGAACTTTGCTATTCCATGCTATGCAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGACTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTCTCAAGTAGTTAACTTCATGTGAGTGCATGCTGGTGGACTTCTACTTGACAACCTTTACTAGATTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGGAAAGTTTAGGATGCTCCAATCTTGTTATGGATATTGTCTTGTTTGTTTACCCCAGTTTTGTGTTATTGTTCAGTAATCCCATTTTATATCAGTTCTTAAACCTTTTTTTAAATTTCCAAGTTTTATTATTAAAACTAGAAACAGAATCGTCAATGACTGG

Coding sequence (CDS)

ATGGCGAGGTACCGAAGCCGGAGCAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGGTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGTGGCAGAAGCAGCAGAAGACGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTCTTACTCACGCTCACCTTCACCTGCCAGGCATGACTCAAGGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTACAGCCGATCTCCAACTCCAAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCTTCTGGATCGCGTTCACGTTCCTTTAGTCCTCGCTGA

Protein sequence

MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDASGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSFSPR
Homology
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BLAST of Cp4.1LG03g11150 vs. Swiss-Prot
Match: SRC28_ARATH (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=SCL28 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 75/179 (41.90%), Postives = 88/179 (49.16%), Query Frame = 1 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ASGRSSR----RRSPARS---PRRRYHSYSRSPSPARHDSRSRGARDEYLSPAR------ 120
           A     R    R  P +    PR  Y    R     ++    R A D   +  R      
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY----RYAEDAAEAMKRMNHKVI 120

Query: 121 -SRSISRSHSPRDRRDYSRSPTPKE----NGRSPRAVDIARSRSRSPRAASRSPSGSRS 162
             R I+   +  +R+      TP+E    NG S R  D  R+  RSPR   RS S SRS
Sbjct: 121 GGREIAIVFAEENRK------TPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 166

[Close]
BLAST of Cp4.1LG03g11150 vs. Swiss-Prot
Match: RSP5_CAEEL (Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 5.6e-06
Identity = 66/153 (43.14%), Postives = 72/153 (47.06%), Query Frame = 1 

Query: 7   RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDASGRSS 66
           R RS SPRRRSRTPPR R R  D  R R   SRS                        SS
Sbjct: 88  RRRSRSPRRRSRTPPRRRSRSRDRKRSRRSRSRS------------------------SS 147

Query: 67  RRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRDYSRS 126
           R RSP R  RRR  S SRSPSP R D +   +R     PA+ RS +RS SP         
Sbjct: 148 RSRSPVRESRRR--SESRSPSPKR-DLKREASRSRSPLPAKDRSRTRSGSP--------- 202

Query: 127 PTPKENGRSPRAVDIARSRSR--SPRAASRSPS 158
             PK  G   R+V   RS SR  S R+ SRSPS
Sbjct: 208 --PKNGGDRKRSVSRGRSHSRDGSNRSVSRSPS 202

[Close]
BLAST of Cp4.1LG03g11150 vs. TrEMBL
Match: M5XS42_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 79/106 (74.53%), Postives = 86/106 (81.13%), Query Frame = 1 

Query: 63  GRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRD 122
           G SSRRR+P RSPRR+Y SYSRSPSP R DSR RGARD+Y SP +SRSISRS SPRD RD
Sbjct: 147 GGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSRDRGARDDYRSPVQSRSISRSPSPRDGRD 206

Query: 123 YSRSPTPKENGRSPR-AVDIARSRSRSPRAASRSPSGSRSRSFSPR 168
           Y RSP+P+ENGRSPR   D A SRSRS R  SRSPS SRSRS+SPR
Sbjct: 207 YRRSPSPRENGRSPRDERDYAPSRSRSLRGNSRSPSRSRSRSYSPR 252

[Close]
BLAST of Cp4.1LG03g11150 vs. TrEMBL
Match: M5Y9H7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 95/183 (51.91%), Postives = 111/183 (60.66%), Query Frame = 1 

Query: 3   RYRSRSRSYSPRRRSRTPPRG----RKRYDDDPRDRY----------RESR---SHRDRR 62
           RY      Y P+      PRG    + RY +D  +            RE R   +  +R+
Sbjct: 72  RYGPVKDVYLPKNYYTGEPRGFGFVKYRYAEDAAEAKQQLNHSVIGGREIRIVFAEENRK 131

Query: 63  SPAPSGLLVRNLPLDASGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSP 122
           +P       R +     G SSRRR+P RSPRR+Y SYSRSPSP R DSR RGARD+Y SP
Sbjct: 132 TPQEMRTTTR-VSSGRYGGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSRDRGARDDYRSP 191

Query: 123 ARSRSISRSHSPRDRRDYSRSPTPKENGRSPR-AVDIARSRSRSPRAASRSPSGSRSRSF 168
            +SRSISRS SPRD RDY RSP+P+ENGRSPR   D A SRSRS R  SRSPS SRSRS+
Sbjct: 192 VQSRSISRSPSPRDGRDYRRSPSPRENGRSPRDERDYAPSRSRSLRGNSRSPSRSRSRSY 251

[Close]
BLAST of Cp4.1LG03g11150 vs. TrEMBL
Match: A0A166I1J0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003304 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.9e-19
Identity = 94/204 (46.08%), Postives = 108/204 (52.94%), Query Frame = 1 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDD-DPRDRYRESRSHRD--------------RR 60
           M RYR RSRSYSP+R  R        YDD   RDR R+ RSHRD              RR
Sbjct: 1   MGRYRERSRSYSPKRSHRD-------YDDRSHRDRDRDDRSHRDYDDRSHRDRRPVRDRR 60

Query: 61  SPAPSGLLVRNLPLDAS-----------------------------GRSSRRRSPARSPR 120
           SP PSGLLVRN+ L A                              G SSRR SP RSPR
Sbjct: 61  SPGPSGLLVRNISLTARPEDLRIPFERFGPVKDVYLPKNYYTGGRHGGSSRRWSPPRSPR 120

Query: 121 RRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRDY---SRSPTPKENG 158
           RRY SYSRSPSPAR+ SR + ARD + SP+RSRSISRS SPRD ++Y    +S +P  NG
Sbjct: 121 RRYRSYSRSPSPARNGSRDKRARD-HRSPSRSRSISRSVSPRDDKEYRSGRQSFSPNRNG 180

[Close]
BLAST of Cp4.1LG03g11150 vs. TrEMBL
Match: U5G2V1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20120g PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-17
Identity = 64/105 (60.95%), Postives = 75/105 (71.43%), Query Frame = 1 

Query: 60  DASGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRD 119
           D  G SSR R+ +RSPR R+ SYSRSPSPARHDSR RG +D+Y S  RSRSIS S SPRD
Sbjct: 142 DRHGGSSRGRTSSRSPRHRHRSYSRSPSPARHDSRDRGVKDDYRSRRRSRSISHSRSPRD 201

Query: 120 RRDY---SRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRS 162
            RDY    +S +P+ENG+SP   D A  RSR+PRA + SP  SRS
Sbjct: 202 GRDYRADQQSLSPRENGQSPGERDHASGRSRTPRAYNNSPLRSRS 246

[Close]
BLAST of Cp4.1LG03g11150 vs. TrEMBL
Match: A0A067KV64_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02045 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 58/81 (71.60%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 1  MARYRSRSRSYSPRRRSRTPPRGRKRYDDD--PRDRYRESRSHRDRRSPAPSGLLVRNLP 60
          MARYRSRSRSYSPRRRS+TPPR RK Y DD  PRDRYR+SRS+R+RRSPAPSGLLVRNLP
Sbjct: 1  MARYRSRSRSYSPRRRSKTPPRSRKHYYDDVEPRDRYRDSRSYRERRSPAPSGLLVRNLP 60

Query: 61 LDASGRSSRRRSPARSPRRRY 80
          LDA      R    R P  +Y
Sbjct: 61 LDA------RPEDLRGPFEKY 75

[Close]
BLAST of Cp4.1LG03g11150 vs. TAIR10
Match: AT5G18810.1 (AT5G18810.1 SC35-like splicing factor 28)

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-09
Identity = 75/179 (41.90%), Postives = 88/179 (49.16%), Query Frame = 1 

Query: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ASGRSSR----RRSPARS---PRRRYHSYSRSPSPARHDSRSRGARDEYLSPAR------ 120
           A     R    R  P +    PR  Y    R     ++    R A D   +  R      
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY----RYAEDAAEAMKRMNHKVI 120

Query: 121 -SRSISRSHSPRDRRDYSRSPTPKE----NGRSPRAVDIARSRSRSPRAASRSPSGSRS 162
             R I+   +  +R+      TP+E    NG S R  D  R+  RSPR   RS S SRS
Sbjct: 121 GGREIAIVFAEENRK------TPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRS 166

[Close]
BLAST of Cp4.1LG03g11150 vs. NCBI nr
Match: gi|659076620|ref|XP_008438778.1| (PREDICTED: serine/arginine-rich splicing factor 33 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.1e-37
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 1 

Query: 61  ASGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDR 120
           +SGRS RRRSPARSPRRRY SYSRSPSPARHDSRSRGARDEYLSPARSRSIS S SPRDR
Sbjct: 142 SSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGARDEYLSPARSRSISHSRSPRDR 201

Query: 121 RDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSFSPR 168
           +DYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRS+SPR
Sbjct: 202 QDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGSRSRSYSPR 248

[Close]
BLAST of Cp4.1LG03g11150 vs. NCBI nr
Match: gi|449432785|ref|XP_004134179.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 8.1e-37
Identity = 94/107 (87.85%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 61  ASGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDR 120
           +SGRS RRRSPARSPRRR  SYSRSPSPARHDSRSRGARDEYLSPARSRSIS S SPRDR
Sbjct: 142 SSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGARDEYLSPARSRSISHSRSPRDR 201

Query: 121 RDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSFSPR 168
           RDYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRS+SPR
Sbjct: 202 RDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGSRSRSYSPR 248

[Close]
BLAST of Cp4.1LG03g11150 vs. NCBI nr
Match: gi|645232904|ref|XP_008223084.1| (PREDICTED: serine/arginine-rich splicing factor 33 isoform X2 [Prunus mume])

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = 1 

Query: 63  GRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRD 122
           G SSRRR+P RSPRR+Y SYSRSPSP  HDSR RGARD+Y SP +SRS+SRS SPRD RD
Sbjct: 147 GGSSRRRTPPRSPRRQYRSYSRSPSPVMHDSRDRGARDDYRSPVQSRSVSRSPSPRDGRD 206

Query: 123 YSRSPTPKENGRSPR-AVDIARSRSRSPRAASRSPSGSRSRSFSPR 168
           Y RSP+P+ENGRSPR   D A SRSRS R  SRSPS SRSRS+SPR
Sbjct: 207 YRRSPSPRENGRSPRDERDYAPSRSRSLRGNSRSPSRSRSRSYSPR 252

[Close]
BLAST of Cp4.1LG03g11150 vs. NCBI nr
Match: gi|694322084|ref|XP_009352183.1| (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-26
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 63  GRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRD 122
           G SSRRR+P RSPRR+Y SYS SPSP R DSR R ARD+Y SP +SRSISRS SPRD RD
Sbjct: 147 GGSSRRRTPPRSPRRQYRSYSPSPSPVRRDSRDRRARDDYRSPVQSRSISRSPSPRDGRD 206

Query: 123 YSRSPTPKENGRSPRAV-DIARSRSRSPRAASRSPSGSRSRSFSPR 168
           Y RSP+P+ENGRSPR V + A SRSRSPR +SRSPS SRSRS+SPR
Sbjct: 207 YRRSPSPRENGRSPRDVREYASSRSRSPRVSSRSPSRSRSRSYSPR 252

[Close]
BLAST of Cp4.1LG03g11150 vs. NCBI nr
Match: gi|596298726|ref|XP_007227540.1| (hypothetical protein PRUPE_ppa010343mg [Prunus persica])

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 79/106 (74.53%), Postives = 86/106 (81.13%), Query Frame = 1 

Query: 63  GRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGARDEYLSPARSRSISRSHSPRDRRD 122
           G SSRRR+P RSPRR+Y SYSRSPSP R DSR RGARD+Y SP +SRSISRS SPRD RD
Sbjct: 147 GGSSRRRTPPRSPRRQYRSYSRSPSPVRRDSRDRGARDDYRSPVQSRSISRSPSPRDGRD 206

Query: 123 YSRSPTPKENGRSPR-AVDIARSRSRSPRAASRSPSGSRSRSFSPR 168
           Y RSP+P+ENGRSPR   D A SRSRS R  SRSPS SRSRS+SPR
Sbjct: 207 YRRSPSPRENGRSPRDERDYAPSRSRSLRGNSRSPSRSRSRSYSPR 252

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g11150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SRC28_ARATH1.8e-0741.90Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana GN=... [more]
RSP5_CAEEL5.6e-0643.14Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rs... [more]
BLAST of Cp4.1LG03g11150 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XS42_PRUPE4.5e-2674.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1[more]
M5Y9H7_PRUPE2.3e-2251.91Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010343mg PE=4 SV=1[more]
A0A166I1J0_DAUCA6.9e-1946.08Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003304 PE=4 SV=1[more]
U5G2V1_POPTR2.9e-1760.95Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20120g PE=4 SV=1[more]
A0A067KV64_JATCU1.1e-1671.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02045 PE=4 SV=1[more]
BLAST of Cp4.1LG03g11150 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18810.19.9e-0941.90 SC35-like splicing factor 28[more]
BLAST of Cp4.1LG03g11150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076620|ref|XP_008438778.1|2.1e-3787.85PREDICTED: serine/arginine-rich splicing factor 33 [Cucumis melo][more]
gi|449432785|ref|XP_004134179.1|8.1e-3787.85PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus... [more]
gi|645232904|ref|XP_008223084.1|4.9e-2673.58PREDICTED: serine/arginine-rich splicing factor 33 isoform X2 [Prunus mume][more]
gi|694322084|ref|XP_009352183.1|4.9e-2673.58PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 isoform X1 [Pyru... [more]
gi|596298726|ref|XP_007227540.1|6.4e-2674.53hypothetical protein PRUPE_ppa010343mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007283spermatogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000221Protamine_P1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007283 spermatogenesis
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g11150.1Cp4.1LG03g11150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000221Protamine P1PROSITEPS00048PROTAMINE_P1coord: 2..12
scor
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 65..167
score: 1.5
NoneNo IPR availablePANTHERPTHR23147:SF7SUBFAMILY NOT NAMEDcoord: 65..167
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g11150ClCG05G005700Watermelon (Charleston Gray)cpewcgB559
Cp4.1LG03g11150CsaV3_3G014050Cucumber (Chinese Long) v3cpecucB0759
Cp4.1LG03g11150Carg17377Silver-seed gourdcarcpeB0860
Cp4.1LG03g11150Carg20148Silver-seed gourdcarcpeB1164
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g11150Silver-seed gourdcarcpeB0106
Cp4.1LG03g11150Silver-seed gourdcarcpeB0454
Cp4.1LG03g11150Silver-seed gourdcarcpeB1201
Cp4.1LG03g11150Cucumber (Chinese Long) v3cpecucB0783
Cp4.1LG03g11150Cucumber (Chinese Long) v3cpecucB0787
Cp4.1LG03g11150Wax gourdcpewgoB0760
Cp4.1LG03g11150Wax gourdcpewgoB0783
Cp4.1LG03g11150Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG03g11150Cucurbita pepo (Zucchini)cpecpeB333
Cp4.1LG03g11150Cucurbita pepo (Zucchini)cpecpeB335
Cp4.1LG03g11150Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG03g11150Cucumber (Gy14) v1cgycpeB0682
Cp4.1LG03g11150Cucumber (Gy14) v1cgycpeB0966
Cp4.1LG03g11150Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g11150Cucurbita maxima (Rimu)cmacpeB403
Cp4.1LG03g11150Cucurbita maxima (Rimu)cmacpeB837
Cp4.1LG03g11150Cucurbita maxima (Rimu)cmacpeB928
Cp4.1LG03g11150Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g11150Cucurbita moschata (Rifu)cmocpeB365
Cp4.1LG03g11150Cucurbita moschata (Rifu)cmocpeB787
Cp4.1LG03g11150Cucurbita moschata (Rifu)cmocpeB862
Cp4.1LG03g11150Wild cucumber (PI 183967)cpecpiB611
Cp4.1LG03g11150Wild cucumber (PI 183967)cpecpiB635
Cp4.1LG03g11150Cucumber (Chinese Long) v2cpecuB609
Cp4.1LG03g11150Cucumber (Chinese Long) v2cpecuB631
Cp4.1LG03g11150Bottle gourd (USVL1VR-Ls)cpelsiB484
Cp4.1LG03g11150Bottle gourd (USVL1VR-Ls)cpelsiB512
Cp4.1LG03g11150Watermelon (Charleston Gray)cpewcgB562
Cp4.1LG03g11150Watermelon (97103) v1cpewmB613
Cp4.1LG03g11150Watermelon (97103) v1cpewmB623
Cp4.1LG03g11150Melon (DHL92) v3.5.1cpemeB555
Cp4.1LG03g11150Melon (DHL92) v3.5.1cpemeB585
Cp4.1LG03g11150Cucumber (Gy14) v2cgybcpeB406
Cp4.1LG03g11150Cucumber (Gy14) v2cgybcpeB833
Cp4.1LG03g11150Cucumber (Gy14) v2cgybcpeB836
Cp4.1LG03g11150Melon (DHL92) v3.6.1cpemedB659
Cp4.1LG03g11150Melon (DHL92) v3.6.1cpemedB693